Wall clock time and date at job start Tue Mar 31 2020 12:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46904 * 108.89310 * 2 1 4 4 N 1.36598 * 110.99902 * 300.70095 * 3 2 1 5 5 C 1.34783 * 120.00126 * 179.97438 * 4 3 2 6 6 O 1.21585 * 119.99913 * 180.02562 * 5 4 3 7 7 N 1.34779 * 119.99768 * 359.97438 * 5 4 3 8 8 C 1.46499 * 119.99872 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.46840 * 179.97438 * 8 7 5 10 10 C 1.52997 * 109.47060 * 180.02562 * 9 8 7 11 11 C 1.50697 * 109.47466 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99890 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00428 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99563 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00432 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46756 * 59.99920 * 15 13 11 17 17 H 1.48490 * 109.47381 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47117 * 300.00527 * 15 13 11 19 19 C 1.52376 * 108.92836 * 118.67007 * 2 1 3 20 20 C 1.54203 * 112.29793 * 120.60854 * 19 2 1 21 21 S 1.83819 * 102.86188 * 25.04632 * 20 19 2 22 22 O 1.42100 * 109.81212 * 77.68864 * 21 20 19 23 23 O 1.42104 * 109.81269 * 212.03691 * 21 20 19 24 24 C 1.54206 * 108.92775 * 241.33088 * 2 1 3 25 25 H 1.09007 * 109.46781 * 59.29610 * 1 2 3 26 26 H 1.08992 * 109.46933 * 179.29749 * 1 2 3 27 27 H 1.08997 * 109.47043 * 299.29898 * 1 2 3 28 28 H 1.00902 * 110.99797 * 64.65436 * 3 2 1 29 29 H 0.97000 * 120.00288 * 0.02562 * 4 3 2 30 30 H 0.97005 * 119.99680 * 0.02562 * 7 5 4 31 31 H 1.09001 * 109.46813 * 60.00258 * 8 7 5 32 32 H 1.08992 * 109.47397 * 300.00319 * 8 7 5 33 33 H 1.09002 * 109.47398 * 300.00326 * 9 8 7 34 34 H 1.09001 * 109.47194 * 60.00507 * 9 8 7 35 35 H 1.09002 * 109.47153 * 300.00319 * 10 9 8 36 36 H 1.08998 * 109.47533 * 59.99948 * 10 9 8 37 37 H 0.97002 * 119.99731 * 180.02562 * 14 13 11 38 38 H 1.09004 * 108.92792 * 241.35655 * 19 2 1 39 39 H 1.09003 * 108.92724 * 359.86242 * 19 2 1 40 40 H 1.09002 * 110.73443 * 143.39096 * 20 19 2 41 41 H 1.09002 * 110.73282 * 266.52071 * 20 19 2 42 42 H 1.08996 * 110.73374 * 332.69159 * 24 2 1 43 43 H 1.09002 * 110.73487 * 96.00001 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0057 1.3899 0.0000 4 7 1.5482 2.0639 -1.0965 5 6 1.8769 3.3584 -1.2776 6 8 1.4693 3.9584 -2.2534 7 7 2.6567 3.9880 -0.3764 8 6 3.0145 5.3949 -0.5735 9 6 3.8988 5.8631 0.5839 10 6 4.2720 7.3326 0.3785 11 6 5.1435 7.7937 1.5182 12 1 5.4054 7.1072 2.3097 13 6 5.6074 9.0917 1.5499 14 7 5.2888 9.9276 0.5858 15 14 6.6871 9.6635 2.9630 16 1 7.9220 8.8399 3.0069 17 1 7.0504 11.0893 2.7629 18 1 5.9477 9.5153 4.2423 19 6 2.0243 -0.6915 1.2646 20 6 2.9013 -1.9214 0.9544 21 16 3.5610 -1.5418 -0.7188 22 8 4.6193 -0.5990 -0.6168 23 8 3.7438 -2.7470 -1.4493 24 6 2.0302 -0.6998 -1.2798 25 1 -0.3633 0.5248 -0.8837 26 1 -0.3633 -1.0275 -0.0126 27 1 -0.3633 0.5029 0.8962 28 1 1.7412 1.8626 0.8513 29 1 0.9861 1.6111 -1.7445 30 1 2.9816 3.5093 0.4022 31 1 2.1080 5.9993 -0.6052 32 1 3.5568 5.5038 -1.5127 33 1 3.3561 5.7543 1.5230 34 1 4.8054 5.2588 0.6161 35 1 4.8146 7.4418 -0.5606 36 1 3.3653 7.9367 0.3465 37 1 5.6155 10.8407 0.6079 38 1 2.6065 0.0189 1.8516 39 1 1.1637 -1.0103 1.8527 40 1 3.7117 -2.0099 1.6779 41 1 2.2995 -2.8301 0.9380 42 1 1.2986 -1.4262 -1.6335 43 1 2.2562 0.0312 -2.0562 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115993023.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:59 Heat of formation + Delta-G solvation = -70.477684 kcal Electronic energy + Delta-G solvation = -25035.434885 eV Core-core repulsion = 21244.218058 eV Total energy + Delta-G solvation = -3791.216827 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.66268 -38.89771 -37.36086 -36.33603 -35.43109 -35.21938 -33.19824 -31.51919 -30.82183 -29.17280 -28.35496 -26.59106 -24.78398 -23.18375 -20.88098 -20.80341 -20.44544 -19.28910 -18.33057 -18.03667 -16.90405 -16.74383 -16.37417 -16.23009 -15.75613 -15.24429 -15.01582 -14.58901 -14.49603 -14.36050 -14.13865 -13.88607 -13.59177 -13.35949 -13.12770 -12.64567 -12.44326 -12.36308 -12.34548 -12.24071 -11.83294 -11.77830 -11.69331 -11.31795 -11.00690 -10.85271 -10.68780 -10.62478 -10.59821 -10.24829 -9.81417 -9.41608 -9.10299 -8.81185 -8.33672 -8.29876 -5.98534 -4.01418 -0.37445 2.02685 2.43062 3.06793 3.19194 3.34503 3.39077 3.40013 3.42192 3.51995 3.73428 3.85983 3.97224 4.26873 4.34676 4.43971 4.48571 4.72771 4.84328 4.93746 4.97904 5.07571 5.14541 5.32003 5.37194 5.44485 5.71700 5.85362 5.92495 6.23017 6.54991 6.66940 6.84463 6.93641 7.06042 7.12328 7.67437 7.80812 8.00654 8.20230 8.41678 8.68912 9.05185 9.62494 11.12794 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.017977 B = 0.002512 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.207326 B =11141.861625 C =11840.741822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.105 3.895 3 N -0.439 5.439 4 N -0.598 5.598 5 C 0.713 3.287 6 O -0.591 6.591 7 N -0.729 5.729 8 C 0.132 3.868 9 C -0.120 4.120 10 C 0.024 3.976 11 C -0.522 4.522 12 H 0.055 0.945 13 C 0.057 3.943 14 N -0.894 5.894 15 Si 0.893 3.107 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.277 1.277 19 C -0.112 4.112 20 C -0.578 4.578 21 S 2.389 3.611 22 O -0.906 6.906 23 O -0.941 6.941 24 C -0.584 4.584 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.343 0.657 29 H 0.411 0.589 30 H 0.400 0.600 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.056 0.944 35 H 0.019 0.981 36 H 0.018 0.982 37 H 0.261 0.739 38 H 0.103 0.897 39 H 0.099 0.901 40 H 0.140 0.860 41 H 0.136 0.864 42 H 0.143 0.857 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.539 -28.278 1.871 30.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.012 3.988 3 N -0.168 5.168 4 N -0.354 5.354 5 C 0.412 3.588 6 O -0.466 6.466 7 N -0.384 5.384 8 C 0.009 3.991 9 C -0.158 4.158 10 C -0.013 4.013 11 C -0.560 4.560 12 H 0.073 0.927 13 C -0.145 4.145 14 N -0.534 5.534 15 Si 0.721 3.279 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.151 4.151 20 C -0.707 4.707 21 S 2.570 3.430 22 O -0.903 6.903 23 O -0.938 6.938 24 C -0.713 4.713 25 H 0.085 0.915 26 H 0.094 0.906 27 H 0.088 0.912 28 H 0.164 0.836 29 H 0.253 0.747 30 H 0.234 0.766 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.038 0.962 36 H 0.037 0.963 37 H 0.071 0.929 38 H 0.122 0.878 39 H 0.118 0.882 40 H 0.158 0.842 41 H 0.154 0.846 42 H 0.162 0.838 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -10.201 -27.789 0.422 29.605 hybrid contribution -1.266 0.183 1.617 2.062 sum -11.466 -27.606 2.039 29.962 Atomic orbital electron populations 1.22651 0.93846 1.03894 1.03389 1.21340 0.95670 0.89009 0.92781 1.62496 1.55805 0.99327 0.99214 1.44799 1.57491 1.10729 1.22337 1.15737 0.79797 0.79717 0.83512 1.90985 1.60176 1.64088 1.31350 1.45351 1.52960 1.13852 1.26265 1.21556 0.99227 0.77986 1.00346 1.21887 0.97632 1.00874 0.95434 1.19019 0.96712 0.88169 0.97422 1.21175 1.30866 0.96189 1.07797 0.92673 1.25029 0.96465 0.96889 0.96092 1.69960 1.45424 1.05512 1.32456 0.86640 0.80972 0.77619 0.82644 1.20215 1.21323 1.20293 1.21648 1.01455 0.95399 0.96616 1.30360 1.10990 1.05711 1.23619 1.09296 0.78242 0.76140 0.79312 1.93709 1.49345 1.62006 1.85226 1.93623 1.85542 1.45053 1.69565 1.30636 1.21842 1.13295 1.05499 0.91494 0.90593 0.91152 0.83609 0.74654 0.76555 0.91969 0.91803 0.92843 0.92514 0.96223 0.96326 0.92900 0.87843 0.88241 0.84163 0.84575 0.83842 0.83509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.57 7.84 37.16 0.29 -0.28 16 2 C 0.10 0.45 0.81 -131.29 -0.11 0.34 16 3 N -0.44 -3.14 5.61 1.00 0.01 -3.14 16 4 N -0.60 -5.90 4.80 27.64 0.13 -5.76 16 5 C 0.71 10.59 8.63 -86.91 -0.75 9.84 16 6 O -0.59 -11.33 17.18 5.29 0.09 -11.24 16 7 N -0.73 -10.64 5.49 -65.23 -0.36 -11.00 16 8 C 0.13 2.37 5.67 -4.04 -0.02 2.34 16 9 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16 10 C 0.02 0.62 4.97 -27.89 -0.14 0.49 16 11 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 12 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 14 N -0.89 -26.99 13.29 55.43 0.74 -26.26 16 15 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 C -0.11 -0.30 5.74 -26.42 -0.15 -0.46 16 20 C -0.58 -1.61 7.40 37.79 0.28 -1.33 16 21 S 2.39 16.02 6.07 -107.50 -0.65 15.37 16 22 O -0.91 -10.39 18.16 -57.66 -1.05 -11.44 16 23 O -0.94 -9.53 18.16 -57.66 -1.05 -10.58 16 24 C -0.58 -2.72 6.11 37.79 0.23 -2.49 16 25 H 0.07 0.27 6.72 -51.93 -0.35 -0.08 16 26 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 27 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.34 2.01 8.09 -181.36 -1.47 0.54 16 29 H 0.41 3.44 6.25 -185.16 -1.16 2.29 16 30 H 0.40 4.85 7.14 -40.82 -0.29 4.56 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.10 0.29 7.70 -51.93 -0.40 -0.11 16 39 H 0.10 0.09 7.52 -51.93 -0.39 -0.30 16 40 H 0.14 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.14 0.10 8.14 -51.93 -0.42 -0.32 16 42 H 0.14 0.27 7.85 -51.93 -0.41 -0.14 16 43 H 0.15 0.87 6.75 -51.93 -0.35 0.52 16 LS Contribution 362.12 15.07 5.46 5.46 Total: -1.00 -39.61 362.12 -11.20 -50.82 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -8.58 Total: -1.32 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: -0.92 Total: -7.48 kcal Atomic # 7 Polarization: -46.67 SS G_CDS: 0.52 Total: -46.16 kcal Atomic # 8 Polarization: -31.25 SS G_CDS: -2.00 Total: -33.25 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: 16.02 SS G_CDS: -0.65 Total: 15.37 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -39.61 -11.20 -50.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115993023.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.659 kcal (2) G-P(sol) polarization free energy of solvation -39.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds