Wall clock time and date at job start Tue Mar 31 2020 12:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46904 * 108.89310 * 2 1 4 4 N 1.36598 * 110.99902 * 300.70095 * 3 2 1 5 5 C 1.34783 * 120.00126 * 179.97438 * 4 3 2 6 6 O 1.21585 * 119.99913 * 180.02562 * 5 4 3 7 7 N 1.34779 * 119.99768 * 359.97438 * 5 4 3 8 8 C 1.46499 * 119.99872 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.46840 * 179.97438 * 8 7 5 10 10 C 1.52997 * 109.47060 * 180.02562 * 9 8 7 11 11 C 1.50697 * 109.47466 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99890 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00428 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99563 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00432 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46756 * 59.99920 * 15 13 11 17 17 H 1.48490 * 109.47381 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47117 * 300.00527 * 15 13 11 19 19 C 1.52376 * 108.92836 * 118.67007 * 2 1 3 20 20 C 1.54203 * 112.29793 * 120.60854 * 19 2 1 21 21 S 1.83819 * 102.86188 * 25.04632 * 20 19 2 22 22 O 1.42100 * 109.81212 * 77.68864 * 21 20 19 23 23 O 1.42104 * 109.81269 * 212.03691 * 21 20 19 24 24 C 1.54206 * 108.92775 * 241.33088 * 2 1 3 25 25 H 1.09007 * 109.46781 * 59.29610 * 1 2 3 26 26 H 1.08992 * 109.46933 * 179.29749 * 1 2 3 27 27 H 1.08997 * 109.47043 * 299.29898 * 1 2 3 28 28 H 1.00902 * 110.99797 * 64.65436 * 3 2 1 29 29 H 0.97000 * 120.00288 * 0.02562 * 4 3 2 30 30 H 0.97005 * 119.99680 * 0.02562 * 7 5 4 31 31 H 1.09001 * 109.46813 * 60.00258 * 8 7 5 32 32 H 1.08992 * 109.47397 * 300.00319 * 8 7 5 33 33 H 1.09002 * 109.47398 * 300.00326 * 9 8 7 34 34 H 1.09001 * 109.47194 * 60.00507 * 9 8 7 35 35 H 1.09002 * 109.47153 * 300.00319 * 10 9 8 36 36 H 1.08998 * 109.47533 * 59.99948 * 10 9 8 37 37 H 0.97002 * 119.99731 * 180.02562 * 14 13 11 38 38 H 1.09004 * 108.92792 * 241.35655 * 19 2 1 39 39 H 1.09003 * 108.92724 * 359.86242 * 19 2 1 40 40 H 1.09002 * 110.73443 * 143.39096 * 20 19 2 41 41 H 1.09002 * 110.73282 * 266.52071 * 20 19 2 42 42 H 1.08996 * 110.73374 * 332.69159 * 24 2 1 43 43 H 1.09002 * 110.73487 * 96.00001 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0057 1.3899 0.0000 4 7 1.5482 2.0639 -1.0965 5 6 1.8769 3.3584 -1.2776 6 8 1.4693 3.9584 -2.2534 7 7 2.6567 3.9880 -0.3764 8 6 3.0145 5.3949 -0.5735 9 6 3.8988 5.8631 0.5839 10 6 4.2720 7.3326 0.3785 11 6 5.1435 7.7937 1.5182 12 1 5.4054 7.1072 2.3097 13 6 5.6074 9.0917 1.5499 14 7 5.2888 9.9276 0.5858 15 14 6.6871 9.6635 2.9630 16 1 7.9220 8.8399 3.0069 17 1 7.0504 11.0893 2.7629 18 1 5.9477 9.5153 4.2423 19 6 2.0243 -0.6915 1.2646 20 6 2.9013 -1.9214 0.9544 21 16 3.5610 -1.5418 -0.7188 22 8 4.6193 -0.5990 -0.6168 23 8 3.7438 -2.7470 -1.4493 24 6 2.0302 -0.6998 -1.2798 25 1 -0.3633 0.5248 -0.8837 26 1 -0.3633 -1.0275 -0.0126 27 1 -0.3633 0.5029 0.8962 28 1 1.7412 1.8626 0.8513 29 1 0.9861 1.6111 -1.7445 30 1 2.9816 3.5093 0.4022 31 1 2.1080 5.9993 -0.6052 32 1 3.5568 5.5038 -1.5127 33 1 3.3561 5.7543 1.5230 34 1 4.8054 5.2588 0.6161 35 1 4.8146 7.4418 -0.5606 36 1 3.3653 7.9367 0.3465 37 1 5.6155 10.8407 0.6079 38 1 2.6065 0.0189 1.8516 39 1 1.1637 -1.0103 1.8527 40 1 3.7117 -2.0099 1.6779 41 1 2.2995 -2.8301 0.9380 42 1 1.2986 -1.4262 -1.6335 43 1 2.2562 0.0312 -2.0562 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115993023.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:58 Heat of formation + Delta-G solvation = -103.645281 kcal Electronic energy + Delta-G solvation = -25036.873140 eV Core-core repulsion = 21244.218058 eV Total energy + Delta-G solvation = -3792.655082 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.52261 -39.71891 -38.00066 -36.98701 -36.94145 -36.00119 -35.08350 -32.88828 -31.65579 -29.80545 -28.78799 -28.34926 -25.30079 -24.82468 -22.28155 -21.93917 -21.22769 -19.92039 -19.33186 -18.74834 -18.40405 -17.39758 -17.30757 -16.91310 -16.75574 -16.57252 -16.19385 -16.02145 -15.43428 -15.26374 -14.95469 -14.69858 -14.24676 -14.08532 -13.74774 -13.68385 -13.55101 -13.49121 -13.16562 -13.01600 -12.87133 -12.70031 -12.66602 -12.52306 -12.37412 -12.09252 -11.86659 -11.68794 -11.63353 -11.52887 -11.33446 -11.16055 -11.04871 -10.52119 -10.10917 -9.06945 -8.16879 -6.28237 -0.83569 1.43279 1.46785 1.54235 1.57311 1.62504 2.05867 2.42112 2.50050 2.66395 3.06475 3.16833 3.32135 3.54561 3.65035 3.82369 4.07210 4.08067 4.20191 4.26835 4.32489 4.58464 4.60186 4.72858 4.77895 4.79604 4.94213 4.99248 5.01821 5.12647 5.19436 5.23193 5.33281 5.48812 5.56987 5.74652 5.87245 6.08466 6.20284 6.26016 6.89045 7.20523 7.41171 7.57726 8.95167 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.017977 B = 0.002512 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.207326 B =11141.861625 C =11840.741822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.105 3.895 3 N -0.453 5.453 4 N -0.578 5.578 5 C 0.709 3.291 6 O -0.639 6.639 7 N -0.721 5.721 8 C 0.147 3.853 9 C -0.100 4.100 10 C 0.024 3.976 11 C -0.541 4.541 12 H 0.067 0.933 13 C -0.004 4.004 14 N -0.936 5.936 15 Si 0.967 3.033 16 H -0.267 1.267 17 H -0.287 1.287 18 H -0.263 1.263 19 C -0.114 4.114 20 C -0.543 4.543 21 S 2.368 3.632 22 O -0.968 6.968 23 O -0.987 6.987 24 C -0.575 4.575 25 H 0.055 0.945 26 H 0.101 0.899 27 H 0.077 0.923 28 H 0.355 0.645 29 H 0.419 0.581 30 H 0.414 0.586 31 H 0.052 0.948 32 H 0.043 0.957 33 H 0.072 0.928 34 H 0.064 0.936 35 H -0.010 1.010 36 H -0.006 1.006 37 H 0.263 0.737 38 H 0.105 0.895 39 H 0.134 0.866 40 H 0.154 0.846 41 H 0.169 0.831 42 H 0.176 0.824 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.741 -30.571 4.844 33.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.013 3.987 3 N -0.184 5.184 4 N -0.331 5.331 5 C 0.409 3.591 6 O -0.519 6.519 7 N -0.377 5.377 8 C 0.022 3.978 9 C -0.138 4.138 10 C -0.013 4.013 11 C -0.579 4.579 12 H 0.085 0.915 13 C -0.201 4.201 14 N -0.576 5.576 15 Si 0.792 3.208 16 H -0.192 1.192 17 H -0.212 1.212 18 H -0.188 1.188 19 C -0.154 4.154 20 C -0.677 4.677 21 S 2.558 3.442 22 O -0.965 6.965 23 O -0.984 6.984 24 C -0.706 4.706 25 H 0.074 0.926 26 H 0.119 0.881 27 H 0.096 0.904 28 H 0.177 0.823 29 H 0.264 0.736 30 H 0.251 0.749 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.008 0.992 36 H 0.013 0.987 37 H 0.072 0.928 38 H 0.123 0.877 39 H 0.152 0.848 40 H 0.172 0.828 41 H 0.187 0.813 42 H 0.194 0.806 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -11.374 -30.167 3.394 32.418 hybrid contribution -0.977 0.808 0.722 1.459 sum -12.351 -29.358 4.116 32.115 Atomic orbital electron populations 1.22666 0.92188 1.05538 1.03264 1.21532 0.96856 0.87060 0.93262 1.62463 1.56728 1.00663 0.98582 1.44463 1.56199 1.09053 1.23372 1.15824 0.79589 0.80972 0.82764 1.90951 1.61896 1.65833 1.33219 1.44986 1.53156 1.12558 1.26982 1.21114 0.98145 0.79895 0.98664 1.21583 0.98454 0.96976 0.96805 1.18930 0.95033 0.91748 0.95615 1.21666 1.30976 0.96727 1.08518 0.91470 1.26032 0.98009 0.97145 0.98964 1.70114 1.46886 1.05925 1.34721 0.85464 0.79119 0.76969 0.79268 1.19164 1.21243 1.18807 1.21791 1.02747 0.95074 0.95770 1.30193 1.11446 1.07306 1.18719 1.09466 0.78619 0.74931 0.81220 1.93629 1.52896 1.63322 1.86680 1.93556 1.86620 1.46308 1.71963 1.30583 1.20937 1.13431 1.05619 0.92611 0.88071 0.90386 0.82269 0.73624 0.74885 0.92976 0.93820 0.90981 0.91773 0.99196 0.98743 0.92848 0.87654 0.84800 0.82802 0.81319 0.80618 0.85031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.40 7.84 71.98 0.56 0.16 16 2 C 0.10 0.57 0.81 3.73 0.00 0.57 16 3 N -0.45 -5.53 5.61 -150.76 -0.85 -6.38 16 4 N -0.58 -10.76 4.80 -184.74 -0.89 -11.64 16 5 C 0.71 20.99 8.63 179.05 1.54 22.53 16 6 O -0.64 -25.14 17.18 -3.98 -0.07 -25.21 16 7 N -0.72 -20.70 5.49 -478.54 -2.62 -23.33 16 8 C 0.15 5.36 5.67 86.38 0.49 5.85 16 9 C -0.10 -3.93 5.27 30.59 0.16 -3.77 16 10 C 0.02 1.29 4.97 29.85 0.15 1.44 16 11 C -0.54 -30.42 9.11 25.60 0.23 -30.18 16 12 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 13 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 14 N -0.94 -57.73 13.29 21.45 0.28 -57.45 16 15 Si 0.97 44.04 29.54 68.60 2.03 46.07 16 16 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 17 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 18 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 19 C -0.11 -0.11 5.74 30.79 0.18 0.07 16 20 C -0.54 -0.95 7.40 72.39 0.54 -0.41 16 21 S 2.37 30.38 6.07 -56.49 -0.34 30.04 16 22 O -0.97 -23.11 18.16 -127.53 -2.32 -25.42 16 23 O -0.99 -20.30 18.16 -127.53 -2.32 -22.62 16 24 C -0.58 -4.28 6.11 72.39 0.44 -3.83 16 25 H 0.05 0.29 6.72 -2.38 -0.02 0.27 16 26 H 0.10 -0.22 8.14 -2.39 -0.02 -0.24 16 27 H 0.08 0.12 8.14 -2.39 -0.02 0.10 16 28 H 0.35 3.17 8.09 -210.56 -1.70 1.46 16 29 H 0.42 6.57 6.25 -215.50 -1.35 5.22 16 30 H 0.41 9.43 7.14 -92.70 -0.66 8.77 16 31 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 34 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 35 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 36 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 37 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 38 H 0.10 0.17 7.70 -2.39 -0.02 0.15 16 39 H 0.13 -0.62 7.52 -2.39 -0.02 -0.64 16 40 H 0.15 0.03 8.14 -2.39 -0.02 0.01 16 41 H 0.17 -0.67 8.14 -2.39 -0.02 -0.69 16 42 H 0.18 0.11 7.85 -2.39 -0.02 0.10 16 43 H 0.13 1.49 6.75 -2.39 -0.02 1.47 16 Total: -1.00 -90.38 362.12 -4.99 -95.37 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -2.67 Total: 7.92 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: 4.76 Total: -7.35 kcal Atomic # 7 Polarization: -94.73 SS G_CDS: -4.07 Total: -98.80 kcal Atomic # 8 Polarization: -68.55 SS G_CDS: -4.70 Total: -73.26 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 16 Polarization: 30.38 SS G_CDS: -0.34 Total: 30.04 kcal Total: -90.38 -4.99 -95.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115993023.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.274 kcal (2) G-P(sol) polarization free energy of solvation -90.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds