Wall clock time and date at job start Tue Mar 31 2020 13:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47431 * 2 1 4 4 C 1.52997 * 109.46948 * 239.99922 * 2 1 3 5 5 C 1.52998 * 109.47153 * 119.99739 * 2 1 3 6 6 H 1.08994 * 112.78487 * 308.73598 * 5 2 1 7 7 C 1.53246 * 113.38412 * 178.02810 * 5 2 1 8 8 C 1.53494 * 83.42925 * 219.29405 * 7 5 2 9 9 N 1.47069 * 87.98841 * 25.89842 * 8 7 5 10 10 C 1.34778 * 136.05957 * 152.84314 * 9 8 7 11 11 O 1.21547 * 119.99979 * 176.89524 * 10 9 8 12 12 C 1.47862 * 119.99639 * 356.89051 * 10 9 8 13 13 C 1.39668 * 120.10442 * 7.94200 * 12 10 9 14 14 C 1.38047 * 120.04177 * 179.97438 * 13 12 10 15 15 C 1.38176 * 120.24033 * 0.02562 * 14 13 12 16 16 C 1.39179 * 120.20507 * 359.97438 * 15 14 13 17 17 S 1.76196 * 120.02408 * 179.97438 * 16 15 14 18 18 C 1.76198 * 100.00253 * 274.99430 * 17 16 15 19 19 H 1.07992 * 119.99875 * 354.98993 * 18 17 16 20 20 C 1.38727 * 119.99777 * 174.99727 * 18 17 16 21 21 N 1.31618 * 120.00507 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99732 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.46818 * 90.00012 * 22 20 18 24 24 H 1.48506 * 109.47081 * 209.99618 * 22 20 18 25 25 H 1.48492 * 109.47158 * 329.99745 * 22 20 18 26 26 C 1.38875 * 119.95884 * 359.75302 * 16 15 14 27 27 H 1.09007 * 109.46844 * 301.94530 * 1 2 3 28 28 H 1.09002 * 109.47235 * 61.94004 * 1 2 3 29 29 H 1.08991 * 109.47627 * 181.94588 * 1 2 3 30 30 H 1.09000 * 109.47330 * 180.02562 * 3 2 1 31 31 H 1.09007 * 109.46862 * 300.00338 * 3 2 1 32 32 H 1.08992 * 109.47220 * 59.99361 * 3 2 1 33 33 H 1.09004 * 109.47153 * 304.84732 * 4 2 1 34 34 H 1.08997 * 109.47487 * 64.85109 * 4 2 1 35 35 H 1.09004 * 109.47531 * 184.85154 * 4 2 1 36 36 H 1.08995 * 114.32137 * 105.66258 * 7 5 2 37 37 H 1.09001 * 114.19554 * 332.91906 * 7 5 2 38 38 H 1.09000 * 113.46956 * 271.12221 * 8 7 5 39 39 H 1.09007 * 113.51802 * 140.68855 * 8 7 5 40 40 H 1.08007 * 119.98110 * 359.97438 * 13 12 10 41 41 H 1.07995 * 119.87604 * 179.97438 * 14 13 12 42 42 H 1.08004 * 119.89815 * 179.97438 * 15 14 13 43 43 H 0.97002 * 120.00498 * 180.02562 * 21 20 18 44 44 H 1.08002 * 120.12616 * 180.27383 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2493 6 1 1.5878 -0.3461 2.1673 7 6 3.5681 -0.8155 1.3159 8 6 3.2813 -2.2207 1.8629 9 7 2.0038 -2.1870 1.1350 10 6 1.1699 -3.0981 0.5955 11 8 0.1247 -2.7403 0.0886 12 6 1.5266 -4.5328 0.6203 13 6 2.6402 -4.9654 1.3438 14 6 2.9718 -6.3053 1.3665 15 6 2.2056 -7.2236 0.6744 16 6 1.0938 -6.8036 -0.0499 17 16 0.1205 -7.9786 -0.9313 18 6 1.0368 -8.0697 -2.4335 19 1 1.8806 -7.4146 -2.5918 20 6 0.6741 -8.9829 -3.4128 21 7 -0.3541 -9.7815 -3.2197 22 14 1.6452 -9.0790 -5.0058 23 1 2.7511 -10.0581 -4.8529 24 1 0.7482 -9.5133 -6.1068 25 1 2.2079 -7.7421 -5.3239 26 6 0.7493 -5.4585 -0.0739 27 1 -0.3633 0.5438 0.8721 28 1 -0.3634 0.4834 -0.9069 29 1 -0.3634 -1.0270 0.0349 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6074 -1.7208 -1.2937 34 1 1.7493 -0.1598 -2.1371 35 1 3.1265 -0.7972 -1.2069 36 1 4.0285 -0.1405 2.0372 37 1 4.0591 -0.8063 0.3427 38 1 3.1630 -2.2491 2.9461 39 1 3.9711 -2.9801 1.4943 40 1 3.2423 -4.2512 1.8860 41 1 3.8336 -6.6368 1.9265 42 1 2.4703 -8.2705 0.6956 43 1 -0.6074 -10.4203 -3.9043 44 1 -0.1155 -5.1302 -0.6314 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135024954.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:42 Heat of formation + Delta-G solvation = 30.568250 kcal Electronic energy + Delta-G solvation = -24606.702107 eV Core-core repulsion = 21230.716223 eV Total energy + Delta-G solvation = -3375.985883 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.22660 -38.77683 -37.35051 -35.72820 -32.50984 -31.32334 -30.57364 -29.44251 -27.31041 -27.17307 -26.04761 -25.55554 -23.81922 -22.23781 -21.72918 -20.23633 -18.56137 -17.89221 -17.12018 -16.58805 -16.25725 -15.51642 -14.97712 -14.85158 -14.56961 -14.40878 -14.10039 -13.85194 -13.55124 -13.33734 -13.10020 -13.05318 -12.71369 -12.39647 -12.29471 -12.22757 -11.86806 -11.78345 -11.59140 -11.31236 -11.15681 -11.11877 -11.05578 -10.75190 -10.74617 -10.62497 -10.22943 -9.90186 -9.38021 -9.15587 -9.01023 -8.83268 -8.52945 -8.01063 -6.70995 -6.28607 -4.02413 1.19355 1.67902 2.70591 3.05079 3.19730 3.21123 3.27369 3.46633 4.05022 4.08931 4.25429 4.43805 4.57590 4.71899 4.74787 4.87336 4.91990 5.07579 5.15108 5.20037 5.22695 5.31543 5.36971 5.43668 5.47850 5.50078 5.59115 5.67244 5.77060 5.80029 5.84191 5.89083 5.90238 6.02329 6.10110 6.12907 6.19855 6.25940 6.39115 6.61326 6.64436 6.74094 6.95536 7.22005 7.57238 7.68101 8.32529 8.36057 9.17054 10.78138 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.016832 B = 0.003378 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.116275 B = 8287.494281 C = 8923.647632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.068 4.068 3 C -0.137 4.137 4 C -0.141 4.141 5 C 0.145 3.855 6 H 0.089 0.911 7 C -0.156 4.156 8 C 0.089 3.911 9 N -0.638 5.638 10 C 0.594 3.406 11 O -0.523 6.523 12 C -0.149 4.149 13 C -0.104 4.104 14 C -0.143 4.143 15 C -0.055 4.055 16 C -0.107 4.107 17 S -0.035 6.035 18 C -0.519 4.519 19 H 0.075 0.925 20 C 0.073 3.927 21 N -0.870 5.870 22 Si 0.920 3.080 23 H -0.276 1.276 24 H -0.281 1.281 25 H -0.271 1.271 26 C -0.021 4.021 27 H 0.041 0.959 28 H 0.046 0.954 29 H 0.109 0.891 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.131 0.869 41 H 0.122 0.878 42 H 0.130 0.870 43 H 0.270 0.730 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.999 18.445 11.334 23.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.069 4.069 3 C -0.194 4.194 4 C -0.198 4.198 5 C 0.042 3.958 6 H 0.107 0.893 7 C -0.193 4.193 8 C -0.034 4.034 9 N -0.374 5.374 10 C 0.387 3.613 11 O -0.402 6.402 12 C -0.154 4.154 13 C -0.123 4.123 14 C -0.163 4.163 15 C -0.076 4.076 16 C -0.217 4.217 17 S 0.200 5.800 18 C -0.667 4.667 19 H 0.093 0.907 20 C -0.136 4.136 21 N -0.506 5.506 22 Si 0.746 3.254 23 H -0.202 1.202 24 H -0.206 1.206 25 H -0.196 1.196 26 C -0.042 4.042 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.127 0.873 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.106 0.894 37 H 0.117 0.883 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.149 0.851 41 H 0.140 0.860 42 H 0.148 0.852 43 H 0.079 0.921 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 8.152 17.711 11.156 22.464 hybrid contribution 1.773 0.534 -1.191 2.202 sum 9.925 18.246 9.965 23.038 Atomic orbital electron populations 1.22442 0.93656 1.06589 1.00280 1.20621 0.96989 0.94789 0.94457 1.21810 1.00761 0.95067 1.01809 1.21916 1.00245 1.01447 0.96194 1.22693 0.94502 0.80318 0.98245 0.89276 1.23551 0.96082 0.96784 1.02900 1.23167 0.85160 0.97721 0.97316 1.49538 1.24059 1.07285 1.56520 1.17926 0.81774 0.84597 0.76963 1.90551 1.23689 1.79666 1.46259 1.19780 0.99209 0.92043 1.04369 1.21764 0.95814 0.96466 0.98238 1.21093 1.00606 0.93097 1.01493 1.22003 0.92855 0.99956 0.92806 1.22819 0.99771 0.98016 1.01135 1.83621 1.34000 1.48371 1.14056 1.22829 1.18286 1.24552 1.01030 0.90672 1.24994 0.95403 0.94374 0.98787 1.69984 1.25163 1.20703 1.34719 0.86127 0.79403 0.78677 0.81163 1.20175 1.20640 1.19568 1.21896 0.97251 0.91299 0.93780 0.93960 0.93464 0.87345 0.92618 0.92458 0.92772 0.91631 0.92993 0.93045 0.89368 0.88259 0.89529 0.89340 0.85147 0.85992 0.85170 0.92057 0.84383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.18 8.36 37.16 0.31 -1.87 16 2 C -0.07 -0.72 0.57 -154.51 -0.09 -0.81 16 3 C -0.14 -1.10 8.29 37.16 0.31 -0.79 16 4 C -0.14 -1.72 7.81 37.16 0.29 -1.42 16 5 C 0.15 1.39 3.29 -72.52 -0.24 1.15 16 6 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 7 C -0.16 -1.04 6.91 -26.35 -0.18 -1.22 16 8 C 0.09 0.70 6.51 -8.50 -0.06 0.65 16 9 N -0.64 -7.64 3.02 -178.70 -0.54 -8.18 16 10 C 0.59 9.63 6.54 -12.32 -0.08 9.55 16 11 O -0.52 -9.87 12.16 5.32 0.06 -9.81 16 12 C -0.15 -2.56 5.87 -105.00 -0.62 -3.18 16 13 C -0.10 -1.48 9.18 -39.12 -0.36 -1.84 16 14 C -0.14 -2.12 10.02 -39.67 -0.40 -2.52 16 15 C -0.06 -1.02 9.79 -39.25 -0.38 -1.40 16 16 C -0.11 -2.31 5.45 -39.00 -0.21 -2.53 16 17 S -0.03 -0.91 21.40 -107.50 -2.30 -3.21 16 18 C -0.52 -14.72 9.46 30.91 0.29 -14.43 16 19 H 0.08 2.11 7.79 -52.49 -0.41 1.70 16 20 C 0.07 2.06 5.49 -17.46 -0.10 1.97 16 21 N -0.87 -25.51 13.22 55.49 0.73 -24.78 16 22 Si 0.92 21.45 29.55 -169.99 -5.02 16.42 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 26 C -0.02 -0.42 9.34 -38.92 -0.36 -0.78 16 27 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.11 1.73 4.16 -52.12 -0.22 1.52 16 30 H 0.05 0.38 7.50 -51.93 -0.39 -0.01 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 1.02 5.30 -51.93 -0.28 0.74 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.05 0.55 6.18 -51.93 -0.32 0.23 16 36 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.10 0.71 6.21 -51.93 -0.32 0.39 16 38 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.09 0.67 6.13 -51.93 -0.32 0.35 16 40 H 0.13 1.38 3.85 -52.48 -0.20 1.18 16 41 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 42 H 0.13 2.34 8.06 -52.48 -0.42 1.92 16 43 H 0.27 7.36 8.31 -40.82 -0.34 7.03 16 44 H 0.14 2.99 7.67 -52.49 -0.40 2.59 16 LS Contribution 357.94 15.07 5.39 5.39 Total: -1.00 -32.18 357.94 -9.77 -41.95 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -6.22 Total: 1.69 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: -1.87 Total: -19.48 kcal Atomic # 7 Polarization: -33.15 SS G_CDS: 0.19 Total: -32.96 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.06 Total: -9.81 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -0.91 SS G_CDS: -2.30 Total: -3.21 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.18 -9.77 -41.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135024954.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.517 kcal (2) G-P(sol) polarization free energy of solvation -32.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds