Wall clock time and date at job start Tue Mar 31 2020 13:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47431 * 2 1 4 4 C 1.52997 * 109.46948 * 239.99922 * 2 1 3 5 5 C 1.52998 * 109.47153 * 119.99739 * 2 1 3 6 6 H 1.08994 * 112.78487 * 308.73598 * 5 2 1 7 7 C 1.53246 * 113.38412 * 178.02810 * 5 2 1 8 8 C 1.53494 * 83.42925 * 219.29405 * 7 5 2 9 9 N 1.47069 * 87.98841 * 25.89842 * 8 7 5 10 10 C 1.34778 * 136.05957 * 152.84314 * 9 8 7 11 11 O 1.21547 * 119.99979 * 176.89524 * 10 9 8 12 12 C 1.47862 * 119.99639 * 356.89051 * 10 9 8 13 13 C 1.39668 * 120.10442 * 7.94200 * 12 10 9 14 14 C 1.38047 * 120.04177 * 179.97438 * 13 12 10 15 15 C 1.38176 * 120.24033 * 0.02562 * 14 13 12 16 16 C 1.39179 * 120.20507 * 359.97438 * 15 14 13 17 17 S 1.76196 * 120.02408 * 179.97438 * 16 15 14 18 18 C 1.76198 * 100.00253 * 274.99430 * 17 16 15 19 19 H 1.07992 * 119.99875 * 354.98993 * 18 17 16 20 20 C 1.38727 * 119.99777 * 174.99727 * 18 17 16 21 21 N 1.31618 * 120.00507 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99732 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.46818 * 90.00012 * 22 20 18 24 24 H 1.48506 * 109.47081 * 209.99618 * 22 20 18 25 25 H 1.48492 * 109.47158 * 329.99745 * 22 20 18 26 26 C 1.38875 * 119.95884 * 359.75302 * 16 15 14 27 27 H 1.09007 * 109.46844 * 301.94530 * 1 2 3 28 28 H 1.09002 * 109.47235 * 61.94004 * 1 2 3 29 29 H 1.08991 * 109.47627 * 181.94588 * 1 2 3 30 30 H 1.09000 * 109.47330 * 180.02562 * 3 2 1 31 31 H 1.09007 * 109.46862 * 300.00338 * 3 2 1 32 32 H 1.08992 * 109.47220 * 59.99361 * 3 2 1 33 33 H 1.09004 * 109.47153 * 304.84732 * 4 2 1 34 34 H 1.08997 * 109.47487 * 64.85109 * 4 2 1 35 35 H 1.09004 * 109.47531 * 184.85154 * 4 2 1 36 36 H 1.08995 * 114.32137 * 105.66258 * 7 5 2 37 37 H 1.09001 * 114.19554 * 332.91906 * 7 5 2 38 38 H 1.09000 * 113.46956 * 271.12221 * 8 7 5 39 39 H 1.09007 * 113.51802 * 140.68855 * 8 7 5 40 40 H 1.08007 * 119.98110 * 359.97438 * 13 12 10 41 41 H 1.07995 * 119.87604 * 179.97438 * 14 13 12 42 42 H 1.08004 * 119.89815 * 179.97438 * 15 14 13 43 43 H 0.97002 * 120.00498 * 180.02562 * 21 20 18 44 44 H 1.08002 * 120.12616 * 180.27383 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2493 6 1 1.5878 -0.3461 2.1673 7 6 3.5681 -0.8155 1.3159 8 6 3.2813 -2.2207 1.8629 9 7 2.0038 -2.1870 1.1350 10 6 1.1699 -3.0981 0.5955 11 8 0.1247 -2.7403 0.0886 12 6 1.5266 -4.5328 0.6203 13 6 2.6402 -4.9654 1.3438 14 6 2.9718 -6.3053 1.3665 15 6 2.2056 -7.2236 0.6744 16 6 1.0938 -6.8036 -0.0499 17 16 0.1205 -7.9786 -0.9313 18 6 1.0368 -8.0697 -2.4335 19 1 1.8806 -7.4146 -2.5918 20 6 0.6741 -8.9829 -3.4128 21 7 -0.3541 -9.7815 -3.2197 22 14 1.6452 -9.0790 -5.0058 23 1 2.7511 -10.0581 -4.8529 24 1 0.7482 -9.5133 -6.1068 25 1 2.2079 -7.7421 -5.3239 26 6 0.7493 -5.4585 -0.0739 27 1 -0.3633 0.5438 0.8721 28 1 -0.3634 0.4834 -0.9069 29 1 -0.3634 -1.0270 0.0349 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6074 -1.7208 -1.2937 34 1 1.7493 -0.1598 -2.1371 35 1 3.1265 -0.7972 -1.2069 36 1 4.0285 -0.1405 2.0372 37 1 4.0591 -0.8063 0.3427 38 1 3.1630 -2.2491 2.9461 39 1 3.9711 -2.9801 1.4943 40 1 3.2423 -4.2512 1.8860 41 1 3.8336 -6.6368 1.9265 42 1 2.4703 -8.2705 0.6956 43 1 -0.6074 -10.4203 -3.9043 44 1 -0.1155 -5.1302 -0.6314 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135024954.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:41 Heat of formation + Delta-G solvation = 11.858806 kcal Electronic energy + Delta-G solvation = -24607.513409 eV Core-core repulsion = 21230.716223 eV Total energy + Delta-G solvation = -3376.797186 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.12691 -40.01104 -38.59264 -36.57665 -34.67369 -32.60717 -31.97103 -30.41006 -28.26999 -27.97131 -27.77222 -26.77120 -24.96780 -23.61758 -22.64551 -21.24103 -20.04533 -19.24688 -18.40734 -17.75027 -17.19836 -16.95183 -16.68701 -16.35732 -15.76204 -15.64058 -15.24758 -14.88705 -14.72172 -14.65671 -14.18414 -14.07579 -13.80469 -13.70285 -13.27901 -13.18994 -13.04291 -12.99668 -12.97357 -12.70523 -12.58904 -12.48043 -12.37989 -12.09269 -11.78231 -11.58959 -11.52372 -11.23750 -10.99247 -10.81044 -10.50989 -10.04124 -9.72413 -9.59982 -8.83551 -8.40809 -6.21522 -0.16740 0.23418 1.28043 1.36019 1.44447 1.61542 1.82062 1.83729 2.22915 2.79499 2.91941 3.35540 3.40021 3.51483 3.77717 3.89029 3.94611 3.95903 3.99844 4.20249 4.30825 4.42129 4.42910 4.52480 4.57031 4.61105 4.69046 4.76443 4.79127 4.87255 4.88229 4.97698 5.01244 5.09813 5.10783 5.19141 5.26604 5.29322 5.33246 5.36132 5.39938 5.48099 5.53933 5.67135 5.86684 6.13839 6.69995 6.99059 7.22522 8.66489 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.016832 B = 0.003378 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.116275 B = 8287.494281 C = 8923.647632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.068 4.068 3 C -0.130 4.130 4 C -0.138 4.138 5 C 0.135 3.865 6 H 0.105 0.895 7 C -0.133 4.133 8 C 0.080 3.920 9 N -0.640 5.640 10 C 0.585 3.415 11 O -0.567 6.567 12 C -0.151 4.151 13 C -0.081 4.081 14 C -0.122 4.122 15 C -0.067 4.067 16 C -0.127 4.127 17 S -0.099 6.099 18 C -0.536 4.536 19 H 0.066 0.934 20 C 0.020 3.980 21 N -0.906 5.906 22 Si 0.993 3.007 23 H -0.260 1.260 24 H -0.272 1.272 25 H -0.269 1.269 26 C -0.047 4.047 27 H 0.053 0.947 28 H 0.038 0.962 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.050 0.950 32 H 0.067 0.933 33 H 0.025 0.975 34 H 0.045 0.955 35 H 0.070 0.930 36 H 0.128 0.872 37 H 0.097 0.903 38 H 0.118 0.882 39 H 0.098 0.902 40 H 0.181 0.819 41 H 0.175 0.825 42 H 0.130 0.870 43 H 0.274 0.726 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.534 20.918 13.480 28.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.068 4.068 3 C -0.187 4.187 4 C -0.195 4.195 5 C 0.033 3.967 6 H 0.123 0.877 7 C -0.171 4.171 8 C -0.041 4.041 9 N -0.374 5.374 10 C 0.377 3.623 11 O -0.448 6.448 12 C -0.156 4.156 13 C -0.098 4.098 14 C -0.141 4.141 15 C -0.088 4.088 16 C -0.238 4.238 17 S 0.136 5.864 18 C -0.683 4.683 19 H 0.084 0.916 20 C -0.185 4.185 21 N -0.543 5.543 22 Si 0.815 3.185 23 H -0.185 1.185 24 H -0.197 1.197 25 H -0.194 1.194 26 C -0.069 4.069 27 H 0.072 0.928 28 H 0.057 0.943 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.044 0.956 34 H 0.065 0.935 35 H 0.088 0.912 36 H 0.146 0.854 37 H 0.115 0.885 38 H 0.136 0.864 39 H 0.116 0.884 40 H 0.198 0.802 41 H 0.192 0.808 42 H 0.148 0.852 43 H 0.083 0.917 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 12.726 20.210 13.342 27.357 hybrid contribution 0.381 -0.051 -1.731 1.773 sum 13.107 20.159 11.611 26.702 Atomic orbital electron populations 1.22387 0.95930 1.04313 1.00412 1.20633 0.95160 0.96681 0.94340 1.21752 1.01966 0.92761 1.02244 1.21884 1.01139 0.99317 0.97199 1.23058 0.97167 0.78460 0.98047 0.87737 1.23507 0.93254 0.96498 1.03809 1.23605 0.82790 0.98892 0.98776 1.49686 1.24422 1.08053 1.55214 1.17814 0.82050 0.84796 0.77663 1.90560 1.25791 1.80215 1.48281 1.20002 0.99418 0.92458 1.03731 1.22327 0.94123 0.97280 0.96120 1.21581 1.00631 0.92331 0.99578 1.22068 0.92358 1.01047 0.93332 1.22456 1.01383 0.97002 1.02956 1.83515 1.37130 1.50717 1.15030 1.23032 1.18069 1.24752 1.02448 0.91570 1.26016 0.96385 0.93705 1.02406 1.70109 1.26690 1.21364 1.36097 0.85030 0.78179 0.78906 0.76392 1.18519 1.19660 1.19350 1.21595 0.97720 0.91835 0.95772 0.92765 0.94279 0.90801 0.90545 0.93097 0.91381 0.95597 0.93541 0.91164 0.85397 0.88499 0.86385 0.88358 0.80245 0.80801 0.85202 0.91654 0.87855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.47 8.36 71.98 0.60 -3.87 16 2 C -0.07 -1.31 0.57 -52.18 -0.03 -1.34 16 3 C -0.13 -1.66 8.29 71.98 0.60 -1.06 16 4 C -0.14 -3.32 7.81 71.98 0.56 -2.75 16 5 C 0.13 2.11 3.29 41.71 0.14 2.25 16 6 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 7 C -0.13 -1.02 6.91 30.84 0.21 -0.80 16 8 C 0.08 0.80 6.51 83.18 0.54 1.34 16 9 N -0.64 -13.71 3.02 -837.55 -2.53 -16.25 16 10 C 0.58 19.16 6.54 86.79 0.57 19.73 16 11 O -0.57 -23.06 12.16 -3.86 -0.05 -23.10 16 12 C -0.15 -5.20 5.87 -20.11 -0.12 -5.32 16 13 C -0.08 -2.01 9.18 22.57 0.21 -1.80 16 14 C -0.12 -3.16 10.02 22.21 0.22 -2.94 16 15 C -0.07 -2.47 9.79 22.48 0.22 -2.25 16 16 C -0.13 -5.82 5.45 22.65 0.12 -5.70 16 17 S -0.10 -5.55 21.40 -56.49 -1.21 -6.76 16 18 C -0.54 -32.01 9.46 67.94 0.64 -31.37 16 19 H 0.07 3.92 7.79 -2.91 -0.02 3.90 16 20 C 0.02 1.17 5.49 84.84 0.47 1.63 16 21 N -0.91 -55.27 13.22 21.63 0.29 -54.98 16 22 Si 0.99 44.96 29.55 68.60 2.03 46.99 16 23 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 24 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 25 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 26 C -0.05 -2.08 9.34 22.70 0.21 -1.87 16 27 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 28 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.07 2.53 4.16 -5.29 -0.02 2.51 16 30 H 0.08 0.68 7.50 -2.39 -0.02 0.66 16 31 H 0.05 0.72 8.14 -2.38 -0.02 0.71 16 32 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.02 0.82 5.30 -2.38 -0.01 0.81 16 34 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.07 1.36 6.18 -2.38 -0.01 1.35 16 36 H 0.13 0.12 8.14 -2.39 -0.02 0.10 16 37 H 0.10 0.86 6.21 -2.39 -0.01 0.84 16 38 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.10 0.83 6.13 -2.38 -0.01 0.82 16 40 H 0.18 2.68 3.85 -2.91 -0.01 2.67 16 41 H 0.17 2.82 8.06 -2.91 -0.02 2.80 16 42 H 0.13 4.70 8.06 -2.91 -0.02 4.68 16 43 H 0.27 15.46 8.31 -92.71 -0.77 14.68 16 44 H 0.10 5.11 7.67 -2.91 -0.02 5.09 16 Total: -1.00 -80.13 357.94 4.69 -75.44 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 0.99 Total: 14.80 kcal Atomic # 6 Polarization: -41.30 SS G_CDS: 5.17 Total: -36.13 kcal Atomic # 7 Polarization: -68.98 SS G_CDS: -2.25 Total: -71.23 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.05 Total: -23.10 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Atomic # 16 Polarization: -5.55 SS G_CDS: -1.21 Total: -6.76 kcal Total: -80.13 4.69 -75.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135024954.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.302 kcal (2) G-P(sol) polarization free energy of solvation -80.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds