Wall clock time and date at job start Tue Mar 31 2020 12:36:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.52998 * 109.69254 * 2 1
4 4 C 1.52727 * 109.65861 * 239.75418 * 2 1 3
5 5 N 1.46370 * 109.77540 * 182.65558 * 4 2 1
6 6 C 1.34774 * 119.64822 * 245.08752 * 5 4 2
7 7 O 1.21277 * 120.00022 * 359.44983 * 6 5 4
8 8 C 1.50699 * 120.00227 * 179.72712 * 6 5 4
9 9 H 1.09002 * 109.47090 * 59.72275 * 8 6 5
10 10 C 1.50707 * 109.46969 * 299.72362 * 8 6 5
11 11 H 1.07992 * 119.99687 * 326.62081 * 10 8 6
12 12 C 1.37874 * 119.99999 * 146.62631 * 10 8 6
13 13 N 1.31519 * 120.00072 * 5.36167 * 12 10 8
14 14 Si 1.86799 * 120.00012 * 185.36732 * 12 10 8
15 15 H 1.48501 * 109.46891 * 359.97438 * 14 12 10
16 16 H 1.48506 * 109.47102 * 119.99587 * 14 12 10
17 17 H 1.48503 * 109.47118 * 239.99735 * 14 12 10
18 18 C 1.50703 * 109.47308 * 179.72200 * 8 6 5
19 19 C 1.38233 * 119.99677 * 66.51679 * 18 8 6
20 20 C 1.38234 * 119.99767 * 179.79272 * 19 18 8
21 21 C 1.38240 * 120.00083 * 0.43352 * 20 19 18
22 22 C 1.38234 * 119.99657 * 359.81314 * 21 20 19
23 23 C 1.38231 * 120.00025 * 246.78390 * 18 8 6
24 24 C 1.46379 * 120.70590 * 64.80659 * 5 4 2
25 25 C 1.53237 * 109.48955 * 295.19220 * 24 5 4
26 26 S 1.81740 * 109.58390 * 120.34446 * 2 1 3
27 27 H 1.09001 * 109.47045 * 299.65618 * 1 2 3
28 28 H 1.08997 * 109.47307 * 59.65990 * 1 2 3
29 29 H 1.09000 * 109.46698 * 179.65544 * 1 2 3
30 30 H 1.08999 * 109.47390 * 180.34630 * 3 2 1
31 31 H 1.09004 * 109.47330 * 300.34212 * 3 2 1
32 32 H 1.08999 * 109.47532 * 60.34648 * 3 2 1
33 33 H 1.08997 * 109.32735 * 62.55983 * 4 2 1
34 34 H 1.09001 * 109.32404 * 302.74791 * 4 2 1
35 35 H 0.97000 * 120.00122 * 180.02562 * 13 12 10
36 36 H 1.07995 * 120.00385 * 359.97438 * 19 18 8
37 37 H 1.08003 * 120.00420 * 180.27000 * 20 19 18
38 38 H 1.07993 * 120.00194 * 179.83986 * 21 20 19
39 39 H 1.08004 * 120.00134 * 179.97438 * 22 21 20
40 40 H 1.08001 * 120.00110 * 359.97438 * 23 18 8
41 41 H 1.09004 * 109.46630 * 55.19971 * 24 5 4
42 42 H 1.08999 * 109.47014 * 175.18883 * 24 5 4
43 43 H 1.09002 * 109.58104 * 177.45028 * 25 24 5
44 44 H 1.09000 * 109.58489 * 297.72000 * 25 24 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0456 1.4405 0.0000
4 6 2.0438 -0.7245 -1.2425
5 7 3.5061 -0.7813 -1.2133
6 6 4.2177 -0.1240 -2.1503
7 8 3.6459 0.5021 -3.0175
8 6 5.7237 -0.1721 -2.1243
9 1 6.0558 -1.2064 -2.2136
10 6 6.2222 0.4051 -0.8245
11 1 5.6830 1.2114 -0.3497
12 6 7.3668 -0.0961 -0.2416
13 7 8.0815 -1.0038 -0.8701
14 14 7.9024 0.5141 1.4407
15 1 6.9343 1.5279 1.9308
16 1 7.9477 -0.6272 2.3899
17 1 9.2512 1.1269 1.3387
18 6 6.2720 0.6326 -3.2744
19 6 6.0968 2.0035 -3.3044
20 6 6.6034 2.7422 -4.3572
21 6 7.2775 2.1089 -5.3846
22 6 7.4483 0.7374 -5.3572
23 6 6.9453 -0.0007 -4.3022
24 6 4.2041 -1.5395 -0.1738
25 6 3.9338 -0.9014 1.1930
26 16 2.1392 -0.8650 1.4777
27 1 -0.3633 0.5085 0.8931
28 1 -0.3634 0.5191 -0.8869
29 1 -0.3633 -1.0277 -0.0062
30 1 3.1355 1.4363 -0.0062
31 1 1.6792 1.9576 -0.8869
32 1 1.6893 1.9540 0.8930
33 1 1.7188 -0.1873 -2.1335
34 1 1.6412 -1.7372 -1.2618
35 1 8.8865 -1.3567 -0.4599
36 1 5.5666 2.4978 -2.5038
37 1 6.4704 3.8138 -4.3785
38 1 7.6711 2.6857 -6.2084
39 1 7.9746 0.2426 -6.1600
40 1 7.0788 -1.0722 -4.2807
41 1 3.8449 -2.5687 -0.1717
42 1 5.2755 -1.5292 -0.3740
43 1 4.4156 -1.4909 1.9730
44 1 4.3286 0.1145 1.2064
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001137186739.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:36:47
Heat of formation + Delta-G solvation = -15.848290 kcal
Electronic energy + Delta-G solvation = -26074.789415 eV
Core-core repulsion = 22696.790759 eV
Total energy + Delta-G solvation = -3377.998656 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 319.135 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-39.72952 -38.07905 -36.28629 -34.57633 -33.46258 -31.15470 -30.08134 -29.95496
-27.94813 -27.22867 -25.90789 -23.84276 -22.75081 -21.62653 -20.95091 -20.19988
-18.58991 -17.02583 -16.32857 -15.96756 -15.84352 -15.28773 -14.78572 -14.57831
-14.42620 -14.16830 -13.95984 -13.60124 -13.25239 -13.03852 -12.63395 -12.47914
-12.38720 -12.31532 -12.07571 -11.84766 -11.67957 -11.62194 -11.48783 -11.12747
-11.11193 -11.05427 -11.00858 -10.52775 -10.37027 -10.26801 -10.00685 -9.51912
-9.37389 -8.88570 -8.66243 -8.22511 -7.97235 -7.64418 -7.37383 -6.38890
-4.43589 2.00811 2.35077 2.37533 2.79857 3.08813 3.20366 3.21497
3.52039 3.70979 4.16880 4.76275 4.82704 4.95409 4.98509 5.15807
5.40542 5.49904 5.59846 5.68385 5.69815 5.75074 5.78237 5.82427
5.88306 5.92067 5.96979 6.04499 6.11962 6.15198 6.23122 6.34854
6.45047 6.50401 6.51188 6.57221 6.78845 6.92049 7.09423 7.18923
7.34406 7.41792 7.51857 7.66827 7.89651 7.96874 8.11512 8.56926
9.07351 9.18907 10.68500
Molecular weight = 319.13amu
Principal moments of inertia in cm(-1)
A = 0.012360 B = 0.006186 C = 0.004707
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2264.792373 B = 4525.458663 C = 5947.365193
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.124 4.124
2 C -0.035 4.035
3 C -0.137 4.137
4 C 0.118 3.882
5 N -0.611 5.611
6 C 0.529 3.471
7 O -0.561 6.561
8 C 0.051 3.949
9 H 0.087 0.913
10 C -0.511 4.511
11 H 0.063 0.937
12 C 0.076 3.924
13 N -0.873 5.873
14 Si 0.886 3.114
15 H -0.269 1.269
16 H -0.278 1.278
17 H -0.281 1.281
18 C -0.009 4.009
19 C -0.084 4.084
20 C -0.134 4.134
21 C -0.148 4.148
22 C -0.132 4.132
23 C -0.116 4.116
24 C 0.108 3.892
25 C -0.085 4.085
26 S -0.285 6.285
27 H 0.063 0.937
28 H 0.069 0.931
29 H 0.063 0.937
30 H 0.066 0.934
31 H 0.061 0.939
32 H 0.059 0.941
33 H 0.097 0.903
34 H 0.069 0.931
35 H 0.268 0.732
36 H 0.109 0.891
37 H 0.105 0.895
38 H 0.104 0.896
39 H 0.106 0.894
40 H 0.111 0.889
41 H 0.060 0.940
42 H 0.140 0.860
43 H 0.105 0.895
44 H 0.096 0.904
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.623 -0.351 0.783 7.671
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.183 4.183
2 C -0.145 4.145
3 C -0.195 4.195
4 C -0.007 4.007
5 N -0.344 5.344
6 C 0.321 3.679
7 O -0.439 6.439
8 C 0.030 3.970
9 H 0.105 0.895
10 C -0.548 4.548
11 H 0.081 0.919
12 C -0.130 4.130
13 N -0.508 5.508
14 Si 0.712 3.288
15 H -0.193 1.193
16 H -0.203 1.203
17 H -0.207 1.207
18 C -0.010 4.010
19 C -0.103 4.103
20 C -0.153 4.153
21 C -0.166 4.166
22 C -0.150 4.150
23 C -0.135 4.135
24 C -0.016 4.016
25 C -0.234 4.234
26 S -0.057 6.057
27 H 0.082 0.918
28 H 0.088 0.912
29 H 0.082 0.918
30 H 0.085 0.915
31 H 0.080 0.920
32 H 0.078 0.922
33 H 0.115 0.885
34 H 0.087 0.913
35 H 0.078 0.922
36 H 0.127 0.873
37 H 0.123 0.877
38 H 0.123 0.877
39 H 0.124 0.876
40 H 0.129 0.871
41 H 0.079 0.921
42 H 0.158 0.842
43 H 0.123 0.877
44 H 0.115 0.885
Dipole moment (debyes) X Y Z Total
from point charges -8.321 -0.571 1.227 8.430
hybrid contribution 1.251 0.805 0.156 1.496
sum -7.069 0.233 1.383 7.207
Atomic orbital electron populations
1.21598 0.91442 1.02656 1.02557 1.22960 0.98492 0.98138 0.94951
1.22010 1.02491 0.93233 1.01807 1.21472 0.81881 1.00158 0.97202
1.47775 1.04780 1.52014 1.29829 1.21759 0.91534 0.75850 0.78789
1.90572 1.73144 1.43000 1.37194 1.18154 0.85746 0.99225 0.93844
0.89484 1.20643 1.10450 1.19897 1.03839 0.91924 1.24912 0.95738
0.94611 0.97716 1.69925 1.15409 1.28066 1.37394 0.86605 0.79223
0.79205 0.83725 1.19289 1.20341 1.20654 1.19974 0.94208 0.93893
0.92936 1.20789 0.98381 0.94058 0.97039 1.20947 1.00144 0.98760
0.95413 1.20794 1.02171 0.94695 0.98958 1.20897 1.01332 0.94175
0.98571 1.20965 0.99309 0.99349 0.93842 1.21950 1.02042 0.92794
0.84832 1.23871 0.91793 1.06360 1.01392 1.86488 1.09106 1.77214
1.32916 0.91779 0.91213 0.91789 0.91489 0.91973 0.92224 0.88491
0.91259 0.92191 0.87269 0.87660 0.87745 0.87588 0.87095 0.92126
0.84224 0.87710 0.88507
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -1.43 8.52 37.16 0.32 -1.11 16
2 C -0.03 -0.50 0.88 -90.76 -0.08 -0.58 16
3 C -0.14 -2.10 8.27 37.16 0.31 -1.80 16
4 C 0.12 1.87 4.89 -4.25 -0.02 1.85 16
5 N -0.61 -11.08 2.14 -173.91 -0.37 -11.45 16
6 C 0.53 11.21 6.83 -10.99 -0.08 11.13 16
7 O -0.56 -13.02 14.73 5.56 0.08 -12.94 16
8 C 0.05 1.14 1.55 -94.07 -0.15 1.00 16
9 H 0.09 2.06 6.70 -51.93 -0.35 1.71 16
10 C -0.51 -11.67 4.98 -34.44 -0.17 -11.85 16
11 H 0.06 1.48 7.62 -52.49 -0.40 1.08 16
12 C 0.08 1.77 4.90 -17.82 -0.09 1.68 16
13 N -0.87 -21.41 12.87 55.43 0.71 -20.70 16
14 Si 0.89 18.68 29.54 -169.99 -5.02 13.66 16
15 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16
16 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16
17 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16
18 C -0.01 -0.21 4.29 -104.62 -0.45 -0.66 16
19 C -0.08 -1.85 8.33 -39.58 -0.33 -2.18 16
20 C -0.13 -2.61 10.05 -39.58 -0.40 -3.01 16
21 C -0.15 -2.72 10.05 -39.58 -0.40 -3.12 16
22 C -0.13 -2.50 10.05 -39.58 -0.40 -2.90 16
23 C -0.12 -2.48 9.67 -39.59 -0.38 -2.87 16
24 C 0.11 1.86 5.44 -3.98 -0.02 1.84 16
25 C -0.09 -1.39 6.16 37.28 0.23 -1.16 16
26 S -0.28 -4.33 21.09 -107.50 -2.27 -6.59 16
27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16
28 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16
29 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16
30 H 0.07 1.21 6.44 -51.93 -0.33 0.88 16
31 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16
32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16
33 H 0.10 1.63 6.88 -51.93 -0.36 1.28 16
34 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16
35 H 0.27 6.35 8.31 -40.82 -0.34 6.01 16
36 H 0.11 2.42 7.88 -52.49 -0.41 2.01 16
37 H 0.11 1.76 8.06 -52.48 -0.42 1.33 16
38 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16
39 H 0.11 1.71 8.06 -52.48 -0.42 1.28 16
40 H 0.11 2.28 7.96 -52.49 -0.42 1.86 16
41 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16
42 H 0.14 2.74 4.30 -51.93 -0.22 2.52 16
43 H 0.10 1.57 8.14 -51.93 -0.42 1.14 16
44 H 0.10 1.75 6.74 -51.93 -0.35 1.40 16
LS Contribution 358.68 15.07 5.41 5.41
Total: -1.00 -25.88 358.68 -10.19 -36.08
By element:
Atomic # 1 Polarization: 16.90 SS G_CDS: -6.63 Total: 10.27 kcal
Atomic # 6 Polarization: -11.63 SS G_CDS: -2.10 Total: -13.73 kcal
Atomic # 7 Polarization: -32.49 SS G_CDS: 0.34 Total: -32.15 kcal
Atomic # 8 Polarization: -13.02 SS G_CDS: 0.08 Total: -12.94 kcal
Atomic # 14 Polarization: 18.68 SS G_CDS: -5.02 Total: 13.66 kcal
Atomic # 16 Polarization: -4.33 SS G_CDS: -2.27 Total: -6.59 kcal
Total LS contribution 5.41 Total: 5.41 kcal
Total: -25.88 -10.19 -36.08 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001137186739.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 20.228 kcal
(2) G-P(sol) polarization free energy of solvation -25.883 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.656 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.193 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.076 kcal
(6) G-S(sol) free energy of system = (1) + (5) -15.848 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds