Wall clock time and date at job start Tue Mar 31 2020 12:36:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.52998 * 109.69254 * 2 1
4 4 C 1.52727 * 109.65861 * 239.75418 * 2 1 3
5 5 N 1.46370 * 109.77540 * 182.65558 * 4 2 1
6 6 C 1.34774 * 119.64822 * 245.08752 * 5 4 2
7 7 O 1.21277 * 120.00022 * 359.44983 * 6 5 4
8 8 C 1.50699 * 120.00227 * 179.72712 * 6 5 4
9 9 H 1.09002 * 109.47090 * 59.72275 * 8 6 5
10 10 C 1.50707 * 109.46969 * 299.72362 * 8 6 5
11 11 H 1.07992 * 119.99687 * 326.62081 * 10 8 6
12 12 C 1.37874 * 119.99999 * 146.62631 * 10 8 6
13 13 N 1.31519 * 120.00072 * 5.36167 * 12 10 8
14 14 Si 1.86799 * 120.00012 * 185.36732 * 12 10 8
15 15 H 1.48501 * 109.46891 * 359.97438 * 14 12 10
16 16 H 1.48506 * 109.47102 * 119.99587 * 14 12 10
17 17 H 1.48503 * 109.47118 * 239.99735 * 14 12 10
18 18 C 1.50703 * 109.47308 * 179.72200 * 8 6 5
19 19 C 1.38233 * 119.99677 * 66.51679 * 18 8 6
20 20 C 1.38234 * 119.99767 * 179.79272 * 19 18 8
21 21 C 1.38240 * 120.00083 * 0.43352 * 20 19 18
22 22 C 1.38234 * 119.99657 * 359.81314 * 21 20 19
23 23 C 1.38231 * 120.00025 * 246.78390 * 18 8 6
24 24 C 1.46379 * 120.70590 * 64.80659 * 5 4 2
25 25 C 1.53237 * 109.48955 * 295.19220 * 24 5 4
26 26 S 1.81740 * 109.58390 * 120.34446 * 2 1 3
27 27 H 1.09001 * 109.47045 * 299.65618 * 1 2 3
28 28 H 1.08997 * 109.47307 * 59.65990 * 1 2 3
29 29 H 1.09000 * 109.46698 * 179.65544 * 1 2 3
30 30 H 1.08999 * 109.47390 * 180.34630 * 3 2 1
31 31 H 1.09004 * 109.47330 * 300.34212 * 3 2 1
32 32 H 1.08999 * 109.47532 * 60.34648 * 3 2 1
33 33 H 1.08997 * 109.32735 * 62.55983 * 4 2 1
34 34 H 1.09001 * 109.32404 * 302.74791 * 4 2 1
35 35 H 0.97000 * 120.00122 * 180.02562 * 13 12 10
36 36 H 1.07995 * 120.00385 * 359.97438 * 19 18 8
37 37 H 1.08003 * 120.00420 * 180.27000 * 20 19 18
38 38 H 1.07993 * 120.00194 * 179.83986 * 21 20 19
39 39 H 1.08004 * 120.00134 * 179.97438 * 22 21 20
40 40 H 1.08001 * 120.00110 * 359.97438 * 23 18 8
41 41 H 1.09004 * 109.46630 * 55.19971 * 24 5 4
42 42 H 1.08999 * 109.47014 * 175.18883 * 24 5 4
43 43 H 1.09002 * 109.58104 * 177.45028 * 25 24 5
44 44 H 1.09000 * 109.58489 * 297.72000 * 25 24 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0456 1.4405 0.0000
4 6 2.0438 -0.7245 -1.2425
5 7 3.5061 -0.7813 -1.2133
6 6 4.2177 -0.1240 -2.1503
7 8 3.6459 0.5021 -3.0175
8 6 5.7237 -0.1721 -2.1243
9 1 6.0558 -1.2064 -2.2136
10 6 6.2222 0.4051 -0.8245
11 1 5.6830 1.2114 -0.3497
12 6 7.3668 -0.0961 -0.2416
13 7 8.0815 -1.0038 -0.8701
14 14 7.9024 0.5141 1.4407
15 1 6.9343 1.5279 1.9308
16 1 7.9477 -0.6272 2.3899
17 1 9.2512 1.1269 1.3387
18 6 6.2720 0.6326 -3.2744
19 6 6.0968 2.0035 -3.3044
20 6 6.6034 2.7422 -4.3572
21 6 7.2775 2.1089 -5.3846
22 6 7.4483 0.7374 -5.3572
23 6 6.9453 -0.0007 -4.3022
24 6 4.2041 -1.5395 -0.1738
25 6 3.9338 -0.9014 1.1930
26 16 2.1392 -0.8650 1.4777
27 1 -0.3633 0.5085 0.8931
28 1 -0.3634 0.5191 -0.8869
29 1 -0.3633 -1.0277 -0.0062
30 1 3.1355 1.4363 -0.0062
31 1 1.6792 1.9576 -0.8869
32 1 1.6893 1.9540 0.8930
33 1 1.7188 -0.1873 -2.1335
34 1 1.6412 -1.7372 -1.2618
35 1 8.8865 -1.3567 -0.4599
36 1 5.5666 2.4978 -2.5038
37 1 6.4704 3.8138 -4.3785
38 1 7.6711 2.6857 -6.2084
39 1 7.9746 0.2426 -6.1600
40 1 7.0788 -1.0722 -4.2807
41 1 3.8449 -2.5687 -0.1717
42 1 5.2755 -1.5292 -0.3740
43 1 4.4156 -1.4909 1.9730
44 1 4.3286 0.1145 1.2064
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001137186739.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:36:46
Heat of formation + Delta-G solvation = -25.991858 kcal
Electronic energy + Delta-G solvation = -26075.229273 eV
Core-core repulsion = 22696.790759 eV
Total energy + Delta-G solvation = -3378.438514 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 319.135 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-41.31806 -39.60980 -37.75226 -36.11129 -35.02821 -32.86049 -31.55584 -31.46668
-29.53670 -28.35264 -27.37435 -25.55204 -24.19446 -23.20803 -22.42514 -21.49933
-20.15121 -18.74274 -17.98731 -17.49415 -17.28671 -16.74711 -16.34099 -15.91532
-15.87232 -15.69651 -15.53773 -14.83266 -14.68782 -14.64739 -14.15246 -14.03781
-13.84213 -13.79014 -13.43856 -13.27072 -13.09333 -12.94114 -12.89218 -12.81430
-12.71714 -12.37638 -12.24605 -12.11641 -11.95843 -11.74790 -11.53417 -11.25993
-10.72406 -10.65652 -10.38586 -9.68885 -9.55864 -9.25682 -8.63409 -8.21309
-6.28842 0.75684 0.77256 0.80618 1.36994 1.44077 1.50672 1.52558
1.85823 2.23020 2.40142 3.07057 3.24569 3.60603 3.75888 3.96916
4.03983 4.12967 4.21838 4.27281 4.29454 4.42049 4.48103 4.51404
4.59532 4.64178 4.72698 4.75631 4.85563 4.86317 4.88506 4.95702
5.00477 5.04368 5.09745 5.14353 5.24901 5.35596 5.44187 5.65438
5.72761 5.78582 5.84098 5.93390 6.22542 6.37697 6.50898 6.72287
7.33922 7.42894 8.86442
Molecular weight = 319.13amu
Principal moments of inertia in cm(-1)
A = 0.012360 B = 0.006186 C = 0.004707
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2264.792373 B = 4525.458663 C = 5947.365193
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.118 4.118
2 C -0.034 4.034
3 C -0.131 4.131
4 C 0.116 3.884
5 N -0.606 5.606
6 C 0.528 3.472
7 O -0.586 6.586
8 C 0.056 3.944
9 H 0.067 0.933
10 C -0.498 4.498
11 H 0.048 0.952
12 C 0.046 3.954
13 N -0.898 5.898
14 Si 0.931 3.069
15 H -0.269 1.269
16 H -0.266 1.266
17 H -0.290 1.290
18 C -0.037 4.037
19 C -0.109 4.109
20 C -0.136 4.136
21 C -0.144 4.144
22 C -0.130 4.130
23 C -0.140 4.140
24 C 0.110 3.890
25 C -0.086 4.086
26 S -0.266 6.266
27 H 0.072 0.928
28 H 0.082 0.918
29 H 0.075 0.925
30 H 0.033 0.967
31 H 0.060 0.940
32 H 0.072 0.928
33 H 0.087 0.913
34 H 0.089 0.911
35 H 0.268 0.732
36 H 0.093 0.907
37 H 0.133 0.867
38 H 0.145 0.855
39 H 0.138 0.862
40 H 0.107 0.893
41 H 0.081 0.919
42 H 0.114 0.886
43 H 0.119 0.881
44 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.545 -0.101 0.717 8.576
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.177 4.177
2 C -0.144 4.144
3 C -0.190 4.190
4 C -0.008 4.008
5 N -0.338 5.338
6 C 0.320 3.680
7 O -0.467 6.467
8 C 0.035 3.965
9 H 0.084 0.916
10 C -0.536 4.536
11 H 0.066 0.934
12 C -0.156 4.156
13 N -0.535 5.535
14 Si 0.757 3.243
15 H -0.194 1.194
16 H -0.191 1.191
17 H -0.217 1.217
18 C -0.038 4.038
19 C -0.128 4.128
20 C -0.154 4.154
21 C -0.162 4.162
22 C -0.148 4.148
23 C -0.158 4.158
24 C -0.014 4.014
25 C -0.235 4.235
26 S -0.038 6.038
27 H 0.091 0.909
28 H 0.100 0.900
29 H 0.094 0.906
30 H 0.052 0.948
31 H 0.079 0.921
32 H 0.091 0.909
33 H 0.105 0.895
34 H 0.107 0.893
35 H 0.077 0.923
36 H 0.111 0.889
37 H 0.151 0.849
38 H 0.163 0.837
39 H 0.156 0.844
40 H 0.125 0.875
41 H 0.099 0.901
42 H 0.132 0.868
43 H 0.137 0.863
44 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges -9.264 -0.338 1.194 9.347
hybrid contribution 1.507 0.751 0.119 1.688
sum -7.757 0.413 1.313 7.878
Atomic orbital electron populations
1.21599 0.88637 1.03811 1.03634 1.23034 1.00551 0.96954 0.93893
1.21939 1.00261 0.94356 1.02395 1.21658 0.80123 1.01384 0.97647
1.47765 1.05958 1.50984 1.29070 1.21539 0.91267 0.76027 0.79193
1.90538 1.73396 1.44333 1.38420 1.18013 0.86666 0.97925 0.93858
0.91559 1.20531 1.10094 1.19037 1.03959 0.93362 1.25336 0.95743
0.94747 0.99796 1.70006 1.15813 1.29201 1.38467 0.85908 0.78054
0.78987 0.81361 1.19377 1.19131 1.21652 1.20122 0.95380 0.94493
0.93764 1.20806 0.99823 0.94096 0.98041 1.21307 0.99245 1.00177
0.94680 1.21252 1.00820 0.94680 0.99399 1.21295 1.00370 0.94755
0.98346 1.21119 1.00305 0.99567 0.94815 1.21907 1.00656 0.93766
0.85067 1.23759 0.93458 1.05154 1.01110 1.86414 1.07256 1.77079
1.33078 0.90882 0.89966 0.90603 0.94797 0.92128 0.90869 0.89499
0.89308 0.92281 0.88917 0.84899 0.83714 0.84371 0.87523 0.90117
0.86807 0.86311 0.90697
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -2.41 8.52 71.98 0.61 -1.79 16
2 C -0.03 -0.92 0.88 -10.89 -0.01 -0.93 16
3 C -0.13 -3.98 8.27 71.98 0.60 -3.39 16
4 C 0.12 3.58 4.89 86.31 0.42 4.01 16
5 N -0.61 -22.34 2.14 -822.53 -1.76 -24.10 16
6 C 0.53 23.27 6.83 87.66 0.60 23.87 16
7 O -0.59 -28.17 14.73 -3.02 -0.04 -28.21 16
8 C 0.06 2.64 1.55 -13.03 -0.02 2.62 16
9 H 0.07 3.33 6.70 -2.39 -0.02 3.32 16
10 C -0.50 -23.77 4.98 25.60 0.13 -23.64 16
11 H 0.05 2.41 7.62 -2.91 -0.02 2.38 16
12 C 0.05 2.23 4.90 84.65 0.41 2.64 16
13 N -0.90 -45.37 12.87 21.45 0.28 -45.09 16
14 Si 0.93 38.96 29.54 68.60 2.03 40.98 16
15 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16
16 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16
17 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16
18 C -0.04 -1.72 4.29 -19.87 -0.09 -1.80 16
19 C -0.11 -4.91 8.33 22.27 0.19 -4.73 16
20 C -0.14 -5.14 10.05 22.27 0.22 -4.92 16
21 C -0.14 -4.91 10.05 22.27 0.22 -4.69 16
22 C -0.13 -4.74 10.05 22.27 0.22 -4.51 16
23 C -0.14 -6.07 9.67 22.27 0.22 -5.85 16
24 C 0.11 3.83 5.44 86.48 0.47 4.30 16
25 C -0.09 -2.77 6.16 72.06 0.44 -2.32 16
26 S -0.27 -7.62 21.09 -56.49 -1.19 -8.81 16
27 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16
28 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16
29 H 0.07 1.39 8.14 -2.39 -0.02 1.38 16
30 H 0.03 1.25 6.44 -2.39 -0.02 1.23 16
31 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16
32 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16
33 H 0.09 2.90 6.88 -2.39 -0.02 2.88 16
34 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16
35 H 0.27 12.98 8.31 -92.71 -0.77 12.21 16
36 H 0.09 4.34 7.88 -2.91 -0.02 4.31 16
37 H 0.13 4.16 8.06 -2.91 -0.02 4.14 16
38 H 0.15 3.77 8.06 -2.91 -0.02 3.75 16
39 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16
40 H 0.11 4.56 7.96 -2.91 -0.02 4.54 16
41 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16
42 H 0.11 4.64 4.30 -2.39 -0.01 4.63 16
43 H 0.12 3.45 8.14 -2.39 -0.02 3.43 16
44 H 0.07 2.76 6.74 -2.39 -0.02 2.74 16
Total: -1.00 -57.04 358.68 4.93 -52.11
By element:
Atomic # 1 Polarization: 33.27 SS G_CDS: 0.98 Total: 34.25 kcal
Atomic # 6 Polarization: -25.77 SS G_CDS: 4.64 Total: -21.13 kcal
Atomic # 7 Polarization: -67.71 SS G_CDS: -1.49 Total: -69.19 kcal
Atomic # 8 Polarization: -28.17 SS G_CDS: -0.04 Total: -28.21 kcal
Atomic # 14 Polarization: 38.96 SS G_CDS: 2.03 Total: 40.98 kcal
Atomic # 16 Polarization: -7.62 SS G_CDS: -1.19 Total: -8.81 kcal
Total: -57.04 4.93 -52.11 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001137186739.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 26.117 kcal
(2) G-P(sol) polarization free energy of solvation -57.039 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.923 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.931 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.109 kcal
(6) G-S(sol) free energy of system = (1) + (5) -25.992 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds