Wall clock time and date at job start Tue Mar 31 2020 13:42:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53009 * 1
3 3 C 1.52993 * 109.47030 * 2 1
4 4 C 1.52997 * 109.47303 * 179.97438 * 3 2 1
5 5 N 1.46902 * 109.47419 * 179.85807 * 4 3 2
6 6 C 1.46901 * 110.99917 * 288.57783 * 5 4 3
7 7 C 1.50704 * 109.47111 * 160.34057 * 6 5 4
8 8 H 1.08002 * 119.99526 * 4.63886 * 7 6 5
9 9 C 1.37873 * 120.00092 * 184.63304 * 7 6 5
10 10 N 1.31509 * 119.99859 * 0.02562 * 9 7 6
11 11 Si 1.86798 * 119.99822 * 180.02562 * 9 7 6
12 12 H 1.48501 * 109.47234 * 90.00197 * 11 9 7
13 13 H 1.48502 * 109.47227 * 209.99936 * 11 9 7
14 14 H 1.48494 * 109.47200 * 330.00026 * 11 9 7
15 15 C 1.46899 * 111.00203 * 164.62422 * 5 4 3
16 16 C 1.50698 * 109.47065 * 293.95643 * 15 5 4
17 17 C 1.38389 * 119.99928 * 270.00240 * 16 15 5
18 18 F 1.35095 * 119.99865 * 359.97438 * 17 16 15
19 19 C 1.38643 * 120.00059 * 179.97438 * 17 16 15
20 20 F 1.35099 * 119.99922 * 180.27065 * 19 17 16
21 21 C 1.38387 * 119.99982 * 359.97438 * 19 17 16
22 22 C 1.38389 * 120.00226 * 0.02562 * 21 19 17
23 23 F 1.35098 * 120.00203 * 179.97438 * 22 21 19
24 24 C 1.38392 * 120.00140 * 89.99906 * 16 15 5
25 25 F 1.35100 * 120.00088 * 0.04052 * 24 16 15
26 26 H 1.08998 * 109.46761 * 299.99655 * 1 2 3
27 27 H 1.08995 * 109.47203 * 59.99870 * 1 2 3
28 28 H 1.08999 * 109.46786 * 180.02562 * 1 2 3
29 29 H 1.09001 * 109.46852 * 239.99834 * 2 1 3
30 30 H 1.09002 * 109.47216 * 119.99733 * 2 1 3
31 31 H 1.09001 * 109.47438 * 60.00193 * 3 2 1
32 32 H 1.09009 * 109.47210 * 300.00144 * 3 2 1
33 33 H 1.09006 * 109.46819 * 59.85916 * 4 3 2
34 34 H 1.08993 * 109.47376 * 299.86034 * 4 3 2
35 35 H 1.08998 * 109.47181 * 280.33574 * 6 5 4
36 36 H 1.08998 * 109.47005 * 40.34251 * 6 5 4
37 37 H 0.97003 * 119.99711 * 180.02562 * 10 9 7
38 38 H 1.08997 * 109.47511 * 173.95688 * 15 5 4
39 39 H 1.08996 * 109.47072 * 53.95209 * 15 5 4
40 40 H 1.08002 * 120.00195 * 180.02562 * 21 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 6 3.5700 1.4425 0.0006
5 7 4.0597 2.8275 -0.0028
6 6 3.8238 3.4661 -1.3045
7 6 3.8761 4.9638 -1.1462
8 1 4.1394 5.3971 -0.1926
9 6 3.5879 5.7809 -2.2187
10 7 3.2669 5.2533 -3.3797
11 14 3.6535 7.6374 -2.0225
12 1 5.0212 8.1208 -2.3400
13 1 2.6784 8.2678 -2.9484
14 1 3.3128 7.9997 -0.6233
15 6 5.4817 2.8841 0.3613
16 6 5.6513 2.4474 1.7936
17 6 5.5913 3.3810 2.8134
18 9 5.3812 4.6839 2.5248
19 6 5.7467 2.9792 4.1312
20 9 5.6827 3.8898 5.1270
21 6 5.9614 1.6444 4.4268
22 6 6.0214 0.7107 3.4071
23 9 6.2315 -0.5922 3.6957
24 6 5.8669 1.1127 2.0892
25 9 5.9263 0.2013 1.0937
26 1 -0.3633 0.5138 0.8900
27 1 -0.3633 0.5138 -0.8899
28 1 -0.3633 -1.0277 0.0005
29 1 1.8934 -0.5139 -0.8900
30 1 1.8934 -0.5138 0.8900
31 1 1.6768 1.9563 0.8900
32 1 1.6767 1.9563 -0.8900
33 1 3.9337 0.9263 -0.8879
34 1 3.9330 0.9310 0.8920
35 1 4.5918 3.1483 -2.0096
36 1 2.8429 3.1744 -1.6798
37 1 3.0645 5.8282 -4.1344
38 1 5.8457 3.9051 0.2473
39 1 6.0503 2.2207 -0.2905
40 1 6.0821 1.3313 5.4534
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001138234523.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:42:31
Heat of formation + Delta-G solvation = -159.653950 kcal
Electronic energy + Delta-G solvation = -27707.779980 eV
Core-core repulsion = 23215.475526 eV
Total energy + Delta-G solvation = -4492.304453 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 319.125 amu
Computer time = 0.53 seconds
Orbital eigenvalues (eV)
-49.73876 -49.57618 -48.80128 -48.59452 -39.04153 -37.11468 -34.39840 -32.74670
-31.51084 -29.90322 -28.79947 -27.27762 -25.30687 -23.25238 -22.87604 -22.43988
-20.89288 -19.89947 -18.55438 -18.37716 -17.97928 -17.05876 -16.57582 -16.44252
-15.97895 -15.65556 -15.41193 -15.13790 -15.00470 -14.90777 -14.76321 -14.52920
-14.36303 -13.91245 -13.81989 -13.35440 -13.18597 -12.77056 -12.39705 -12.21272
-12.03965 -11.91130 -11.58011 -11.41476 -11.21307 -11.01737 -10.78972 -10.71631
-10.56240 -10.42370 -10.12320 -9.74708 -9.34651 -9.09647 -8.73362 -8.43997
-7.42139 -6.04161 -4.05418 0.40319 0.47847 2.75324 3.24974 3.31812
3.38437 3.43781 3.60392 3.74905 4.12359 4.25811 4.41166 4.56146
4.78301 5.08855 5.17817 5.25578 5.29154 5.33420 5.36937 5.43241
5.47031 5.68370 5.71001 5.87987 6.02697 6.04862 6.08685 6.19146
6.20800 6.26797 6.39854 6.43467 6.67551 6.81176 7.11203 7.25049
7.77654 7.99896 8.08657 8.45801 9.02318 9.59102 11.06321
Molecular weight = 319.13amu
Principal moments of inertia in cm(-1)
A = 0.010097 B = 0.005245 C = 0.003962
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2772.513337 B = 5336.946861 C = 7065.859590
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.122 4.122
3 C -0.113 4.113
4 C 0.050 3.950
5 N -0.527 5.527
6 C 0.192 3.808
7 C -0.507 4.507
8 H 0.065 0.935
9 C 0.057 3.943
10 N -0.899 5.899
11 Si 0.895 3.105
12 H -0.281 1.281
13 H -0.287 1.287
14 H -0.272 1.272
15 C 0.096 3.904
16 C -0.081 4.081
17 C 0.115 3.885
18 F -0.100 7.100
19 C 0.085 3.915
20 F -0.117 7.117
21 C -0.144 4.144
22 C 0.084 3.916
23 F -0.119 7.119
24 C 0.091 3.909
25 F -0.112 7.112
26 H 0.052 0.948
27 H 0.055 0.945
28 H 0.048 0.952
29 H 0.057 0.943
30 H 0.054 0.946
31 H 0.065 0.935
32 H 0.071 0.929
33 H 0.027 0.973
34 H 0.055 0.945
35 H -0.008 1.008
36 H 0.042 0.958
37 H 0.261 0.739
38 H 0.107 0.893
39 H 0.048 0.952
40 H 0.166 0.834
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.932 -10.265 13.476 17.391
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.160 4.160
3 C -0.151 4.151
4 C -0.078 4.078
5 N -0.251 5.251
6 C 0.068 3.932
7 C -0.545 4.545
8 H 0.083 0.917
9 C -0.144 4.144
10 N -0.538 5.538
11 Si 0.723 3.277
12 H -0.207 1.207
13 H -0.213 1.213
14 H -0.197 1.197
15 C -0.032 4.032
16 C -0.083 4.083
17 C 0.093 3.907
18 F -0.078 7.078
19 C 0.064 3.936
20 F -0.096 7.096
21 C -0.164 4.164
22 C 0.063 3.937
23 F -0.097 7.097
24 C 0.069 3.931
25 F -0.091 7.091
26 H 0.071 0.929
27 H 0.074 0.926
28 H 0.067 0.933
29 H 0.076 0.924
30 H 0.073 0.927
31 H 0.083 0.917
32 H 0.090 0.910
33 H 0.046 0.954
34 H 0.074 0.926
35 H 0.009 0.991
36 H 0.060 0.940
37 H 0.071 0.929
38 H 0.126 0.874
39 H 0.066 0.934
40 H 0.183 0.817
Dipole moment (debyes) X Y Z Total
from point charges 3.604 -9.935 13.611 17.233
hybrid contribution 0.441 0.524 -0.581 0.898
sum 4.045 -9.412 13.030 16.575
Atomic orbital electron populations
1.21747 0.96102 1.00877 1.01967 1.21493 0.95656 0.97526 1.01329
1.21579 0.94821 0.95450 1.03267 1.22200 0.95807 0.90468 0.99363
1.62258 1.12586 1.14671 1.35620 1.19838 0.96842 0.94311 0.82218
1.21169 1.46157 0.90451 0.96736 0.91689 1.24959 0.95369 0.98930
0.95190 1.69951 1.47328 1.35279 1.01281 0.86534 0.77735 0.85316
0.78105 1.20741 1.21303 1.19680 1.20935 0.92438 1.03236 0.86623
1.19999 0.99416 0.90071 0.98843 1.17101 1.02645 0.80343 0.90562
1.91645 1.91472 1.30897 1.93769 1.17186 1.05738 0.86917 0.83715
1.91571 1.93754 1.65318 1.58910 1.20692 1.04703 0.90093 1.00881
1.17092 1.05814 0.79516 0.91239 1.91562 1.92306 1.31983 1.93895
1.17139 1.05447 0.86739 0.83726 1.91568 1.93507 1.64867 1.59121
0.92882 0.92605 0.93326 0.92385 0.92692 0.91667 0.91006 0.95438
0.92649 0.99055 0.93967 0.92924 0.87447 0.93388 0.81674
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.84 9.91 37.16 0.37 -1.47 16
2 C -0.12 -1.67 5.93 -26.73 -0.16 -1.83 16
3 C -0.11 -1.91 5.27 -26.74 -0.14 -2.05 16
4 C 0.05 0.89 4.35 -3.82 -0.02 0.87 16
5 N -0.53 -10.85 4.38 -237.52 -1.04 -11.89 16
6 C 0.19 4.79 4.59 -4.97 -0.02 4.76 16
7 C -0.51 -13.80 8.61 -34.44 -0.30 -14.09 16
8 H 0.06 1.77 7.66 -52.49 -0.40 1.37 16
9 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16
10 N -0.90 -26.16 13.29 55.43 0.74 -25.42 16
11 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16
12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16
13 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16
14 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16
15 C 0.10 1.74 4.61 -4.98 -0.02 1.72 16
16 C -0.08 -1.23 4.94 -104.51 -0.52 -1.74 16
17 C 0.11 1.70 7.25 -39.38 -0.29 1.42 16
18 F -0.10 -1.72 16.39 2.25 0.04 -1.69 16
19 C 0.09 1.05 7.30 -39.38 -0.29 0.76 16
20 F -0.12 -1.47 17.18 2.25 0.04 -1.43 16
21 C -0.14 -1.46 10.00 -39.47 -0.39 -1.85 16
22 C 0.08 0.98 7.30 -39.38 -0.29 0.69 16
23 F -0.12 -1.38 17.18 2.25 0.04 -1.34 16
24 C 0.09 1.24 5.90 -39.37 -0.23 1.01 16
25 F -0.11 -1.63 14.78 2.25 0.03 -1.60 16
26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16
27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16
28 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16
29 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16
30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16
31 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16
32 H 0.07 1.37 6.51 -51.92 -0.34 1.03 16
33 H 0.03 0.50 8.06 -51.93 -0.42 0.09 16
34 H 0.06 0.91 4.64 -51.93 -0.24 0.67 16
35 H -0.01 -0.22 8.00 -51.93 -0.42 -0.64 16
36 H 0.04 1.12 6.21 -51.93 -0.32 0.80 16
37 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16
38 H 0.11 2.11 6.82 -51.93 -0.35 1.75 16
39 H 0.05 0.85 7.62 -51.93 -0.40 0.45 16
40 H 0.17 1.17 8.06 -52.49 -0.42 0.74 16
LS Contribution 346.21 15.07 5.22 5.22
Total: -1.00 -28.39 346.21 -7.33 -35.72
By element:
Atomic # 1 Polarization: 1.30 SS G_CDS: -4.98 Total: -3.68 kcal
Atomic # 6 Polarization: -7.94 SS G_CDS: -2.39 Total: -10.33 kcal
Atomic # 7 Polarization: -37.01 SS G_CDS: -0.30 Total: -37.31 kcal
Atomic # 9 Polarization: -6.21 SS G_CDS: 0.15 Total: -6.06 kcal
Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal
Total LS contribution 5.22 Total: 5.22 kcal
Total: -28.39 -7.33 -35.72 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001138234523.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -123.932 kcal
(2) G-P(sol) polarization free energy of solvation -28.391 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.323 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.331 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.722 kcal
(6) G-S(sol) free energy of system = (1) + (5) -159.654 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.53 seconds