Wall clock time and date at job start Tue Mar 31 2020 13:42:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53009 * 1
3 3 C 1.52993 * 109.47030 * 2 1
4 4 C 1.52997 * 109.47303 * 179.97438 * 3 2 1
5 5 N 1.46902 * 109.47419 * 179.85807 * 4 3 2
6 6 C 1.46901 * 110.99917 * 288.57783 * 5 4 3
7 7 C 1.50704 * 109.47111 * 160.34057 * 6 5 4
8 8 H 1.08002 * 119.99526 * 4.63886 * 7 6 5
9 9 C 1.37873 * 120.00092 * 184.63304 * 7 6 5
10 10 N 1.31509 * 119.99859 * 0.02562 * 9 7 6
11 11 Si 1.86798 * 119.99822 * 180.02562 * 9 7 6
12 12 H 1.48501 * 109.47234 * 90.00197 * 11 9 7
13 13 H 1.48502 * 109.47227 * 209.99936 * 11 9 7
14 14 H 1.48494 * 109.47200 * 330.00026 * 11 9 7
15 15 C 1.46899 * 111.00203 * 164.62422 * 5 4 3
16 16 C 1.50698 * 109.47065 * 293.95643 * 15 5 4
17 17 C 1.38389 * 119.99928 * 270.00240 * 16 15 5
18 18 F 1.35095 * 119.99865 * 359.97438 * 17 16 15
19 19 C 1.38643 * 120.00059 * 179.97438 * 17 16 15
20 20 F 1.35099 * 119.99922 * 180.27065 * 19 17 16
21 21 C 1.38387 * 119.99982 * 359.97438 * 19 17 16
22 22 C 1.38389 * 120.00226 * 0.02562 * 21 19 17
23 23 F 1.35098 * 120.00203 * 179.97438 * 22 21 19
24 24 C 1.38392 * 120.00140 * 89.99906 * 16 15 5
25 25 F 1.35100 * 120.00088 * 0.04052 * 24 16 15
26 26 H 1.08998 * 109.46761 * 299.99655 * 1 2 3
27 27 H 1.08995 * 109.47203 * 59.99870 * 1 2 3
28 28 H 1.08999 * 109.46786 * 180.02562 * 1 2 3
29 29 H 1.09001 * 109.46852 * 239.99834 * 2 1 3
30 30 H 1.09002 * 109.47216 * 119.99733 * 2 1 3
31 31 H 1.09001 * 109.47438 * 60.00193 * 3 2 1
32 32 H 1.09009 * 109.47210 * 300.00144 * 3 2 1
33 33 H 1.09006 * 109.46819 * 59.85916 * 4 3 2
34 34 H 1.08993 * 109.47376 * 299.86034 * 4 3 2
35 35 H 1.08998 * 109.47181 * 280.33574 * 6 5 4
36 36 H 1.08998 * 109.47005 * 40.34251 * 6 5 4
37 37 H 0.97003 * 119.99711 * 180.02562 * 10 9 7
38 38 H 1.08997 * 109.47511 * 173.95688 * 15 5 4
39 39 H 1.08996 * 109.47072 * 53.95209 * 15 5 4
40 40 H 1.08002 * 120.00195 * 180.02562 * 21 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 6 3.5700 1.4425 0.0006
5 7 4.0597 2.8275 -0.0028
6 6 3.8238 3.4661 -1.3045
7 6 3.8761 4.9638 -1.1462
8 1 4.1394 5.3971 -0.1926
9 6 3.5879 5.7809 -2.2187
10 7 3.2669 5.2533 -3.3797
11 14 3.6535 7.6374 -2.0225
12 1 5.0212 8.1208 -2.3400
13 1 2.6784 8.2678 -2.9484
14 1 3.3128 7.9997 -0.6233
15 6 5.4817 2.8841 0.3613
16 6 5.6513 2.4474 1.7936
17 6 5.5913 3.3810 2.8134
18 9 5.3812 4.6839 2.5248
19 6 5.7467 2.9792 4.1312
20 9 5.6827 3.8898 5.1270
21 6 5.9614 1.6444 4.4268
22 6 6.0214 0.7107 3.4071
23 9 6.2315 -0.5922 3.6957
24 6 5.8669 1.1127 2.0892
25 9 5.9263 0.2013 1.0937
26 1 -0.3633 0.5138 0.8900
27 1 -0.3633 0.5138 -0.8899
28 1 -0.3633 -1.0277 0.0005
29 1 1.8934 -0.5139 -0.8900
30 1 1.8934 -0.5138 0.8900
31 1 1.6768 1.9563 0.8900
32 1 1.6767 1.9563 -0.8900
33 1 3.9337 0.9263 -0.8879
34 1 3.9330 0.9310 0.8920
35 1 4.5918 3.1483 -2.0096
36 1 2.8429 3.1744 -1.6798
37 1 3.0645 5.8282 -4.1344
38 1 5.8457 3.9051 0.2473
39 1 6.0503 2.2207 -0.2905
40 1 6.0821 1.3313 5.4534
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001138234523.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:42:30
Heat of formation + Delta-G solvation = -174.217476 kcal
Electronic energy + Delta-G solvation = -27708.411501 eV
Core-core repulsion = 23215.475526 eV
Total energy + Delta-G solvation = -4492.935975 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 319.125 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-50.77782 -50.66909 -49.83250 -49.73963 -40.22661 -38.58874 -35.71803 -34.72173
-32.80653 -30.96054 -30.26774 -28.95105 -26.78142 -24.72367 -24.11651 -23.78755
-22.14430 -21.47103 -19.64145 -19.47771 -19.04000 -18.65099 -18.02064 -17.64388
-17.08691 -16.91670 -16.71846 -16.50267 -16.23131 -16.18864 -16.01624 -15.79800
-15.54278 -15.46510 -15.28811 -14.45836 -14.41568 -14.18529 -13.92350 -13.61980
-13.41782 -13.27230 -13.05749 -12.80249 -12.63983 -12.57738 -12.51363 -12.21577
-12.10944 -11.72015 -11.71441 -11.33531 -11.29616 -10.59591 -10.26726 -9.79143
-9.14619 -8.19503 -6.28405 -0.64419 -0.55542 1.40381 1.41283 1.53178
1.70651 2.21112 2.40405 2.55859 2.70521 3.00350 3.12354 3.18562
3.26031 3.54686 3.93506 3.96518 4.10381 4.13818 4.23009 4.30723
4.40834 4.47096 4.50866 4.62331 4.66796 4.70169 4.80145 4.90300
4.97138 5.09040 5.13852 5.22479 5.27899 5.36440 5.40345 5.48965
5.66903 6.05211 6.23292 6.52383 6.85915 7.40613 8.91009
Molecular weight = 319.13amu
Principal moments of inertia in cm(-1)
A = 0.010097 B = 0.005245 C = 0.003962
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2772.513337 B = 5336.946861 C = 7065.859590
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.116 4.116
3 C -0.109 4.109
4 C 0.053 3.947
5 N -0.534 5.534
6 C 0.209 3.791
7 C -0.518 4.518
8 H 0.060 0.940
9 C 0.006 3.994
10 N -0.932 5.932
11 Si 0.961 3.039
12 H -0.273 1.273
13 H -0.282 1.282
14 H -0.268 1.268
15 C 0.099 3.901
16 C -0.093 4.093
17 C 0.096 3.904
18 F -0.122 7.122
19 C 0.095 3.905
20 F -0.115 7.115
21 C -0.109 4.109
22 C 0.099 3.901
23 F -0.112 7.112
24 C 0.086 3.914
25 F -0.120 7.120
26 H 0.056 0.944
27 H 0.044 0.956
28 H 0.070 0.930
29 H 0.058 0.942
30 H 0.072 0.928
31 H 0.061 0.939
32 H 0.040 0.960
33 H 0.019 0.981
34 H 0.076 0.924
35 H -0.036 1.036
36 H 0.019 0.981
37 H 0.264 0.736
38 H 0.085 0.915
39 H 0.047 0.953
40 H 0.209 0.791
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.172 -11.275 16.225 20.193
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.154 4.154
3 C -0.147 4.147
4 C -0.075 4.075
5 N -0.258 5.258
6 C 0.084 3.916
7 C -0.556 4.556
8 H 0.078 0.922
9 C -0.192 4.192
10 N -0.573 5.573
11 Si 0.786 3.214
12 H -0.198 1.198
13 H -0.207 1.207
14 H -0.192 1.192
15 C -0.029 4.029
16 C -0.096 4.096
17 C 0.075 3.925
18 F -0.100 7.100
19 C 0.074 3.926
20 F -0.094 7.094
21 C -0.129 4.129
22 C 0.078 3.922
23 F -0.091 7.091
24 C 0.065 3.935
25 F -0.098 7.098
26 H 0.075 0.925
27 H 0.063 0.937
28 H 0.089 0.911
29 H 0.077 0.923
30 H 0.090 0.910
31 H 0.080 0.920
32 H 0.059 0.941
33 H 0.037 0.963
34 H 0.094 0.906
35 H -0.018 1.018
36 H 0.037 0.963
37 H 0.073 0.927
38 H 0.103 0.897
39 H 0.065 0.935
40 H 0.226 0.774
Dipole moment (debyes) X Y Z Total
from point charges 3.853 -10.961 16.379 20.082
hybrid contribution 0.413 0.757 -1.362 1.612
sum 4.266 -10.204 15.017 18.650
Atomic orbital electron populations
1.21735 0.94862 1.02245 1.01662 1.21455 0.96724 0.95025 1.02174
1.21540 0.94055 0.97583 1.01496 1.22260 0.96469 0.88881 0.99848
1.62159 1.14551 1.16346 1.32748 1.19440 0.94602 0.93807 0.83793
1.21433 1.45890 0.91755 0.96571 0.92167 1.25798 0.94928 1.03660
0.94816 1.70068 1.48211 1.36984 1.02046 0.85501 0.78084 0.79629
0.78164 1.19830 1.20709 1.19234 1.20740 0.90822 1.02138 0.89153
1.19567 1.01981 0.91128 0.96928 1.17337 1.03952 0.79392 0.91791
1.91584 1.91920 1.32424 1.94087 1.17129 1.05236 0.87690 0.82499
1.91585 1.93692 1.65558 1.58534 1.21024 1.01160 0.88280 1.02391
1.16992 1.04825 0.79958 0.90382 1.91594 1.92122 1.31635 1.93701
1.17190 1.05868 0.85883 0.84564 1.91550 1.93610 1.64917 1.59736
0.92494 0.93679 0.91085 0.92337 0.90955 0.92029 0.94088 0.96278
0.90550 1.01807 0.96261 0.92731 0.89669 0.93465 0.77386
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.44 9.91 71.99 0.71 -2.72 16
2 C -0.12 -3.06 5.93 30.59 0.18 -2.88 16
3 C -0.11 -3.75 5.27 30.59 0.16 -3.58 16
4 C 0.05 1.94 4.35 86.30 0.38 2.32 16
5 N -0.53 -22.96 4.38 -905.38 -3.96 -26.92 16
6 C 0.21 11.05 4.59 85.56 0.39 11.44 16
7 C -0.52 -29.36 8.61 25.60 0.22 -29.14 16
8 H 0.06 3.40 7.66 -2.91 -0.02 3.38 16
9 C 0.01 0.35 5.46 84.65 0.46 0.81 16
10 N -0.93 -55.96 13.29 21.44 0.28 -55.68 16
11 Si 0.96 44.79 29.54 68.60 2.03 46.82 16
12 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16
13 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16
14 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16
15 C 0.10 3.78 4.61 85.56 0.39 4.17 16
16 C -0.09 -2.83 4.94 -19.79 -0.10 -2.92 16
17 C 0.10 2.80 7.25 22.40 0.16 2.96 16
18 F -0.12 -4.29 16.39 44.97 0.74 -3.56 16
19 C 0.10 2.08 7.30 22.40 0.16 2.24 16
20 F -0.12 -2.58 17.18 44.97 0.77 -1.80 16
21 C -0.11 -1.73 10.00 22.34 0.22 -1.50 16
22 C 0.10 1.96 7.30 22.40 0.16 2.12 16
23 F -0.11 -2.16 17.18 44.97 0.77 -1.38 16
24 C 0.09 2.21 5.90 22.40 0.13 2.35 16
25 F -0.12 -3.35 14.78 44.97 0.66 -2.68 16
26 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16
27 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16
28 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16
29 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16
30 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16
31 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16
32 H 0.04 1.65 6.51 -2.38 -0.02 1.63 16
33 H 0.02 0.72 8.06 -2.38 -0.02 0.70 16
34 H 0.08 2.46 4.64 -2.39 -0.01 2.45 16
35 H -0.04 -2.04 8.00 -2.39 -0.02 -2.06 16
36 H 0.02 1.10 6.21 -2.39 -0.01 1.09 16
37 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16
38 H 0.08 3.57 6.82 -2.39 -0.02 3.55 16
39 H 0.05 1.76 7.62 -2.39 -0.02 1.75 16
40 H 0.21 1.59 8.06 -2.91 -0.02 1.57 16
Total: -1.00 -63.54 346.21 6.02 -57.52
By element:
Atomic # 1 Polarization: 0.96 SS G_CDS: 1.07 Total: 2.04 kcal
Atomic # 6 Polarization: -18.00 SS G_CDS: 3.65 Total: -14.35 kcal
Atomic # 7 Polarization: -78.92 SS G_CDS: -3.68 Total: -82.60 kcal
Atomic # 9 Polarization: -12.37 SS G_CDS: 2.95 Total: -9.43 kcal
Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal
Total: -63.54 6.02 -57.52 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001138234523.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -116.700 kcal
(2) G-P(sol) polarization free energy of solvation -63.536 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.237 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.019 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.517 kcal
(6) G-S(sol) free energy of system = (1) + (5) -174.217 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.57 seconds