Wall clock time and date at job start Tue Mar 31 2020 13:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47119 * 2 1 4 4 C 1.53001 * 109.47717 * 239.99311 * 2 1 3 5 5 O 1.45204 * 109.46857 * 119.99368 * 2 1 3 6 6 C 1.34656 * 116.99780 * 60.00266 * 5 2 1 7 7 O 1.21521 * 120.00387 * 0.02562 * 6 5 2 8 8 N 1.34780 * 120.00011 * 179.97438 * 6 5 2 9 9 C 1.40028 * 120.00169 * 185.65010 * 8 6 5 10 10 C 1.38227 * 120.60532 * 24.70969 * 9 8 6 11 11 N 1.32255 * 121.30759 * 180.02562 * 10 9 8 12 12 C 1.32435 * 122.27059 * 359.97438 * 11 10 9 13 13 N 1.38824 * 119.84423 * 179.97438 * 12 11 10 14 14 C 1.36858 * 119.99549 * 0.02562 * 13 12 11 15 15 H 1.08001 * 120.00195 * 359.97438 * 14 13 12 16 16 C 1.38754 * 119.99722 * 179.97438 * 14 13 12 17 17 N 1.31609 * 120.00052 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99937 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47086 * 59.99606 * 18 16 14 20 20 H 1.48498 * 109.47075 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.46685 * 299.99521 * 18 16 14 22 22 C 1.39593 * 120.32141 * 0.02562 * 12 11 10 23 23 N 1.37850 * 134.93268 * 179.97438 * 22 12 11 24 24 H 0.97005 * 126.34299 * 0.04974 * 23 22 12 25 25 C 1.35960 * 107.30994 * 180.02562 * 23 22 12 26 26 N 1.30281 * 110.03121 * 359.97438 * 25 23 22 27 27 C 1.35263 * 109.59679 * 0.02562 * 26 25 23 28 28 H 1.09001 * 109.47433 * 300.00564 * 1 2 3 29 29 H 1.09001 * 109.46919 * 60.00732 * 1 2 3 30 30 H 1.09002 * 109.46957 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.47262 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47232 * 299.98990 * 3 2 1 33 33 H 1.08996 * 109.47584 * 59.99894 * 3 2 1 34 34 H 1.08993 * 109.46746 * 300.00618 * 4 2 1 35 35 H 1.09005 * 109.46695 * 60.00392 * 4 2 1 36 36 H 1.09000 * 109.47374 * 179.97438 * 4 2 1 37 37 H 0.97001 * 119.99721 * 5.66215 * 8 6 5 38 38 H 1.07994 * 119.34269 * 0.02562 * 10 9 8 39 39 H 0.97001 * 120.00406 * 180.02562 * 13 12 11 40 40 H 0.97005 * 119.99848 * 180.02562 * 17 16 14 41 41 H 1.08001 * 124.98399 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 -1.2491 5 8 2.0139 -0.6844 1.1857 6 6 1.6521 -1.9724 1.3385 7 8 0.9515 -2.5099 0.5037 8 7 2.0678 -2.6657 2.4169 9 6 1.7919 -4.0348 2.5181 10 6 1.5733 -4.7943 1.3841 11 7 1.3111 -6.0882 1.4636 12 6 1.2438 -6.7262 2.6222 13 7 0.9645 -8.0858 2.6470 14 6 0.7600 -8.7638 1.4758 15 1 0.8155 -8.2410 0.5324 16 6 0.4814 -10.1228 1.5005 17 7 0.4143 -10.7600 2.6501 18 14 0.2030 -11.0484 -0.0981 19 1 1.4171 -10.9464 -0.9470 20 1 -0.0743 -12.4767 0.1988 21 1 -0.9546 -10.4578 -0.8167 22 6 1.4512 -6.0379 3.8188 23 7 1.4532 -6.3838 5.1532 24 1 1.2917 -7.2680 5.5181 25 6 1.7238 -5.2562 5.8630 26 7 1.8873 -4.2482 5.0540 27 6 1.7320 -4.6624 3.7758 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1301 1.4425 0.0005 32 1 1.6768 1.9563 -0.8901 33 1 1.6767 1.9564 0.8899 34 1 1.6767 -1.7489 -1.2490 35 1 1.6769 -0.2076 -2.1392 36 1 3.1301 -0.7209 -1.2493 37 1 2.5580 -2.2163 3.1231 38 1 1.6174 -4.3218 0.4141 39 1 0.9143 -8.5553 3.4943 40 1 0.2198 -11.7102 2.6673 41 1 1.7939 -5.2040 6.9395 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155534979.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:49 Heat of formation + Delta-G solvation = 10.393995 kcal Electronic energy + Delta-G solvation = -26638.568026 eV Core-core repulsion = 22747.706858 eV Total energy + Delta-G solvation = -3890.861168 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.143 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.61645 -40.53737 -38.08444 -37.11562 -35.36446 -34.29689 -33.60935 -32.24294 -31.44240 -29.37232 -27.63972 -27.41932 -27.32868 -24.92490 -23.28802 -22.43099 -21.90610 -20.37711 -19.79933 -18.84853 -17.85560 -17.50407 -17.26769 -16.18421 -15.95868 -15.44534 -15.21010 -14.86147 -14.57664 -14.45359 -14.27099 -13.96172 -13.51800 -13.31188 -13.25090 -12.66746 -12.51432 -12.42103 -12.27595 -11.85803 -11.80726 -11.71069 -11.62402 -11.27809 -11.14397 -10.89657 -10.65922 -10.46675 -10.23381 -9.86900 -9.81897 -9.62560 -9.42903 -8.63025 -8.48876 -8.11923 -6.74893 -6.50956 -3.84333 1.70393 2.30216 2.48321 3.12022 3.13085 3.17308 3.17834 3.40180 3.50311 3.95505 4.44891 4.64625 4.70915 4.73406 4.74407 4.77580 4.92346 5.15909 5.32012 5.42573 5.52081 5.62704 5.67064 5.73915 5.75889 5.82728 5.89196 5.94975 5.96196 6.32492 6.35484 6.43150 6.49119 6.78633 6.82166 7.00123 7.28152 7.44766 7.70744 7.78716 7.94921 8.30780 8.52198 8.78144 8.94160 9.07115 9.59788 10.40826 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.014480 B = 0.003524 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.195171 B = 7942.706856 C = 9647.243740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.137 3.863 3 C -0.140 4.140 4 C -0.184 4.184 5 O -0.368 6.368 6 C 0.640 3.360 7 O -0.562 6.562 8 N -0.615 5.615 9 C -0.015 4.015 10 C 0.163 3.837 11 N -0.544 5.544 12 C 0.379 3.621 13 N -0.522 5.522 14 C -0.272 4.272 15 H 0.120 0.880 16 C 0.016 3.984 17 N -0.893 5.893 18 Si 0.941 3.059 19 H -0.269 1.269 20 H -0.283 1.283 21 H -0.269 1.269 22 C -0.062 4.062 23 N -0.577 5.577 24 H 0.420 0.580 25 C 0.236 3.764 26 N -0.508 5.508 27 C 0.115 3.885 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.092 0.908 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.409 0.591 38 H 0.165 0.835 39 H 0.401 0.599 40 H 0.278 0.722 41 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.950 14.893 1.514 15.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.100 3.900 3 C -0.197 4.197 4 C -0.241 4.241 5 O -0.283 6.283 6 C 0.394 3.606 7 O -0.451 6.451 8 N -0.265 5.265 9 C -0.119 4.119 10 C 0.004 3.996 11 N -0.269 5.269 12 C 0.129 3.871 13 N -0.128 5.128 14 C -0.404 4.404 15 H 0.138 0.862 16 C -0.188 4.188 17 N -0.530 5.530 18 Si 0.767 3.233 19 H -0.194 1.194 20 H -0.208 1.208 21 H -0.194 1.194 22 C -0.178 4.178 23 N -0.187 5.187 24 H 0.258 0.742 25 C -0.051 4.051 26 N -0.231 5.231 27 C -0.012 4.012 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.110 0.890 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.110 0.890 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.244 0.756 38 H 0.182 0.818 39 H 0.236 0.764 40 H 0.088 0.912 41 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 2.565 14.637 0.385 14.865 hybrid contribution -0.137 -1.290 0.985 1.629 sum 2.428 13.347 1.369 13.635 Atomic orbital electron populations 1.22521 0.94123 1.05400 1.02055 1.21985 0.94316 0.91284 0.82385 1.21847 1.02126 0.92868 1.02838 1.22527 1.01461 1.03886 0.96248 1.86272 1.71662 1.24066 1.46302 1.18014 0.79256 0.80187 0.83151 1.90842 1.40768 1.69761 1.43739 1.41418 1.56974 1.07410 1.20692 1.16794 1.22958 0.81390 0.90748 1.22361 0.92561 0.87564 0.97090 1.67495 1.27258 1.09195 1.22988 1.17442 0.98035 0.85853 0.85734 1.40932 1.59225 1.02924 1.09724 1.20051 1.41882 0.91067 0.87365 0.86245 1.25462 0.97100 0.96875 0.99348 1.69658 1.46774 1.11216 1.25365 0.85728 0.79516 0.77723 0.80371 1.19430 1.20834 1.19405 1.19130 1.17499 0.96619 0.84591 1.42949 1.58527 1.11919 1.05333 0.74238 1.25071 1.00365 0.80923 0.98774 1.70190 1.24151 1.29182 0.99597 1.18253 1.02126 0.89998 0.90847 0.92379 0.91467 0.88993 0.91593 0.90385 0.91636 0.88955 0.91452 0.92270 0.75633 0.81780 0.76396 0.91214 0.77496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.20 8.37 37.16 0.31 -1.89 16 2 C 0.14 1.65 1.13 -90.62 -0.10 1.54 16 3 C -0.14 -1.22 8.85 37.16 0.33 -0.89 16 4 C -0.18 -2.17 8.37 37.16 0.31 -1.86 16 5 O -0.37 -5.37 9.94 -40.37 -0.40 -5.77 16 6 C 0.64 10.93 7.87 54.06 0.43 11.35 16 7 O -0.56 -10.61 9.08 -19.29 -0.18 -10.78 16 8 N -0.62 -10.68 5.39 -13.95 -0.08 -10.76 16 9 C -0.02 -0.31 6.49 -83.19 -0.54 -0.85 16 10 C 0.16 3.56 9.88 -17.37 -0.17 3.39 16 11 N -0.54 -12.97 9.07 -12.25 -0.11 -13.08 16 12 C 0.38 8.76 7.45 -154.99 -1.16 7.60 16 13 N -0.52 -12.47 5.42 -11.10 -0.06 -12.53 16 14 C -0.27 -6.99 9.70 -15.12 -0.15 -7.13 16 15 H 0.12 3.14 7.08 -52.49 -0.37 2.77 16 16 C 0.02 0.40 5.50 -17.46 -0.10 0.30 16 17 N -0.89 -22.60 13.05 55.49 0.72 -21.87 16 18 Si 0.94 19.75 29.55 -169.99 -5.02 14.72 16 19 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 20 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 21 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 22 C -0.06 -1.27 7.18 -83.82 -0.60 -1.87 16 23 N -0.58 -8.96 6.22 -11.62 -0.07 -9.04 16 24 H 0.42 5.37 8.96 -40.82 -0.37 5.00 16 25 C 0.24 3.31 12.97 -89.71 -1.16 2.14 16 26 N -0.51 -8.97 11.26 -11.92 -0.13 -9.10 16 27 C 0.12 2.32 7.22 -84.60 -0.61 1.71 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.09 1.37 5.88 -51.93 -0.31 1.07 16 31 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.09 1.34 5.88 -51.93 -0.31 1.03 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.41 6.33 8.91 -40.82 -0.36 5.97 16 38 H 0.17 3.49 5.77 -52.49 -0.30 3.19 16 39 H 0.40 9.17 7.89 -40.82 -0.32 8.84 16 40 H 0.28 6.68 8.31 -40.82 -0.34 6.34 16 41 H 0.21 1.76 8.06 -52.49 -0.42 1.33 16 LS Contribution 345.03 15.07 5.20 5.20 Total: -1.00 -30.32 345.03 -8.19 -38.51 By element: Atomic # 1 Polarization: 25.82 SS G_CDS: -4.85 Total: 20.96 kcal Atomic # 6 Polarization: 16.76 SS G_CDS: -3.21 Total: 13.55 kcal Atomic # 7 Polarization: -76.66 SS G_CDS: 0.27 Total: -76.39 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: -0.58 Total: -16.55 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.32 -8.19 -38.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155534979.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.904 kcal (2) G-P(sol) polarization free energy of solvation -30.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds