Wall clock time and date at job start Tue Mar 31 2020 13:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47119 * 2 1 4 4 C 1.53001 * 109.47717 * 239.99311 * 2 1 3 5 5 O 1.45204 * 109.46857 * 119.99368 * 2 1 3 6 6 C 1.34656 * 116.99780 * 60.00266 * 5 2 1 7 7 O 1.21521 * 120.00387 * 0.02562 * 6 5 2 8 8 N 1.34780 * 120.00011 * 179.97438 * 6 5 2 9 9 C 1.40028 * 120.00169 * 185.65010 * 8 6 5 10 10 C 1.38227 * 120.60532 * 24.70969 * 9 8 6 11 11 N 1.32255 * 121.30759 * 180.02562 * 10 9 8 12 12 C 1.32435 * 122.27059 * 359.97438 * 11 10 9 13 13 N 1.38824 * 119.84423 * 179.97438 * 12 11 10 14 14 C 1.36858 * 119.99549 * 0.02562 * 13 12 11 15 15 H 1.08001 * 120.00195 * 359.97438 * 14 13 12 16 16 C 1.38754 * 119.99722 * 179.97438 * 14 13 12 17 17 N 1.31609 * 120.00052 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99937 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47086 * 59.99606 * 18 16 14 20 20 H 1.48498 * 109.47075 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.46685 * 299.99521 * 18 16 14 22 22 C 1.39593 * 120.32141 * 0.02562 * 12 11 10 23 23 N 1.37850 * 134.93268 * 179.97438 * 22 12 11 24 24 H 0.97005 * 126.34299 * 0.04974 * 23 22 12 25 25 C 1.35960 * 107.30994 * 180.02562 * 23 22 12 26 26 N 1.30281 * 110.03121 * 359.97438 * 25 23 22 27 27 C 1.35263 * 109.59679 * 0.02562 * 26 25 23 28 28 H 1.09001 * 109.47433 * 300.00564 * 1 2 3 29 29 H 1.09001 * 109.46919 * 60.00732 * 1 2 3 30 30 H 1.09002 * 109.46957 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.47262 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47232 * 299.98990 * 3 2 1 33 33 H 1.08996 * 109.47584 * 59.99894 * 3 2 1 34 34 H 1.08993 * 109.46746 * 300.00618 * 4 2 1 35 35 H 1.09005 * 109.46695 * 60.00392 * 4 2 1 36 36 H 1.09000 * 109.47374 * 179.97438 * 4 2 1 37 37 H 0.97001 * 119.99721 * 5.66215 * 8 6 5 38 38 H 1.07994 * 119.34269 * 0.02562 * 10 9 8 39 39 H 0.97001 * 120.00406 * 180.02562 * 13 12 11 40 40 H 0.97005 * 119.99848 * 180.02562 * 17 16 14 41 41 H 1.08001 * 124.98399 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 -1.2491 5 8 2.0139 -0.6844 1.1857 6 6 1.6521 -1.9724 1.3385 7 8 0.9515 -2.5099 0.5037 8 7 2.0678 -2.6657 2.4169 9 6 1.7919 -4.0348 2.5181 10 6 1.5733 -4.7943 1.3841 11 7 1.3111 -6.0882 1.4636 12 6 1.2438 -6.7262 2.6222 13 7 0.9645 -8.0858 2.6470 14 6 0.7600 -8.7638 1.4758 15 1 0.8155 -8.2410 0.5324 16 6 0.4814 -10.1228 1.5005 17 7 0.4143 -10.7600 2.6501 18 14 0.2030 -11.0484 -0.0981 19 1 1.4171 -10.9464 -0.9470 20 1 -0.0743 -12.4767 0.1988 21 1 -0.9546 -10.4578 -0.8167 22 6 1.4512 -6.0379 3.8188 23 7 1.4532 -6.3838 5.1532 24 1 1.2917 -7.2680 5.5181 25 6 1.7238 -5.2562 5.8630 26 7 1.8873 -4.2482 5.0540 27 6 1.7320 -4.6624 3.7758 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1301 1.4425 0.0005 32 1 1.6768 1.9563 -0.8901 33 1 1.6767 1.9564 0.8899 34 1 1.6767 -1.7489 -1.2490 35 1 1.6769 -0.2076 -2.1392 36 1 3.1301 -0.7209 -1.2493 37 1 2.5580 -2.2163 3.1231 38 1 1.6174 -4.3218 0.4141 39 1 0.9143 -8.5553 3.4943 40 1 0.2198 -11.7102 2.6673 41 1 1.7939 -5.2040 6.9395 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155534979.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:48 Heat of formation + Delta-G solvation = -10.399090 kcal Electronic energy + Delta-G solvation = -26639.469682 eV Core-core repulsion = 22747.706858 eV Total energy + Delta-G solvation = -3891.762824 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.143 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.09400 -41.84095 -39.60440 -38.56021 -36.95018 -35.77138 -34.84532 -33.76778 -33.03841 -30.92663 -29.29840 -28.29322 -28.22059 -26.67813 -24.81815 -23.93769 -23.24323 -21.82799 -21.11194 -20.37148 -19.28192 -19.03091 -18.81028 -17.52891 -17.31610 -16.86245 -16.67169 -16.33066 -16.26830 -15.80444 -15.48609 -15.29410 -14.93028 -14.72642 -14.40234 -14.28843 -14.03451 -13.47073 -13.32409 -13.23866 -12.99292 -12.82857 -12.78616 -12.69464 -12.49529 -12.30128 -12.17847 -12.12354 -11.52558 -11.32673 -11.24951 -11.00395 -10.86777 -10.38521 -10.21756 -9.65440 -8.54792 -8.17981 -5.73798 0.18761 0.65352 1.19038 1.42311 1.46861 1.52461 1.80721 2.04949 2.09739 2.25801 2.90207 2.97439 3.22277 3.35974 3.41449 3.82289 3.86812 3.98544 4.01575 4.12425 4.36485 4.44802 4.59280 4.68364 4.74092 4.80743 4.83218 4.89740 4.95101 4.99855 5.16032 5.21868 5.36479 5.39879 5.42880 5.47881 5.60169 5.75883 6.01450 6.51852 6.53450 6.71336 6.89553 7.15101 7.27919 7.42311 7.86370 8.61994 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.014480 B = 0.003524 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.195171 B = 7942.706856 C = 9647.243740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.124 3.876 3 C -0.133 4.133 4 C -0.182 4.182 5 O -0.364 6.364 6 C 0.643 3.357 7 O -0.580 6.580 8 N -0.614 5.614 9 C 0.010 3.990 10 C 0.136 3.864 11 N -0.572 5.572 12 C 0.377 3.623 13 N -0.544 5.544 14 C -0.299 4.299 15 H 0.100 0.900 16 C -0.022 4.022 17 N -0.922 5.922 18 Si 0.996 3.004 19 H -0.269 1.269 20 H -0.275 1.275 21 H -0.271 1.271 22 C -0.079 4.079 23 N -0.569 5.569 24 H 0.434 0.566 25 C 0.276 3.724 26 N -0.529 5.529 27 C 0.102 3.898 28 H 0.061 0.939 29 H 0.093 0.907 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.104 0.896 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.092 0.908 36 H 0.063 0.937 37 H 0.420 0.580 38 H 0.162 0.838 39 H 0.402 0.598 40 H 0.278 0.722 41 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.496 17.415 2.994 18.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.088 3.912 3 C -0.190 4.190 4 C -0.239 4.239 5 O -0.278 6.278 6 C 0.397 3.603 7 O -0.470 6.470 8 N -0.265 5.265 9 C -0.094 4.094 10 C -0.021 4.021 11 N -0.298 5.298 12 C 0.129 3.871 13 N -0.154 5.154 14 C -0.430 4.430 15 H 0.118 0.882 16 C -0.222 4.222 17 N -0.562 5.562 18 Si 0.820 3.180 19 H -0.194 1.194 20 H -0.199 1.199 21 H -0.196 1.196 22 C -0.195 4.195 23 N -0.180 5.180 24 H 0.275 0.725 25 C -0.010 4.010 26 N -0.251 5.251 27 C -0.026 4.026 28 H 0.080 0.920 29 H 0.111 0.889 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.122 0.878 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.111 0.889 36 H 0.082 0.918 37 H 0.257 0.743 38 H 0.179 0.821 39 H 0.237 0.763 40 H 0.088 0.912 41 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges 3.133 17.250 1.857 17.630 hybrid contribution -0.228 -1.605 0.678 1.757 sum 2.905 15.645 2.535 16.113 Atomic orbital electron populations 1.22481 0.94196 1.03540 1.03585 1.22466 0.94523 0.92860 0.81371 1.21876 1.02492 0.90212 1.04409 1.22494 1.01713 1.02264 0.97429 1.86303 1.71387 1.22414 1.47720 1.18091 0.78731 0.80968 0.82473 1.90859 1.41430 1.70482 1.44255 1.41350 1.57317 1.06465 1.21354 1.16901 1.19264 0.82486 0.90708 1.22352 0.94648 0.87321 0.97746 1.67394 1.27708 1.10277 1.24464 1.17719 0.96856 0.85847 0.86726 1.40746 1.62462 1.03069 1.09135 1.19947 1.43844 0.91759 0.87458 0.88222 1.26091 0.97049 0.97079 1.01982 1.69716 1.48757 1.11263 1.26432 0.84912 0.79041 0.76858 0.77217 1.19445 1.19930 1.19638 1.19033 1.17967 0.96588 0.85958 1.42995 1.58138 1.13367 1.03530 0.72484 1.26405 0.94909 0.78967 1.00768 1.70260 1.25882 1.30543 0.98447 1.18453 1.02191 0.90003 0.91948 0.91971 0.88855 0.92426 0.91061 0.87766 0.91108 0.92212 0.88885 0.91821 0.74335 0.82084 0.76278 0.91240 0.71148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.10 8.37 71.98 0.60 -3.49 16 2 C 0.12 2.76 1.13 -10.79 -0.01 2.75 16 3 C -0.13 -1.90 8.85 71.98 0.64 -1.26 16 4 C -0.18 -4.08 8.37 71.98 0.60 -3.48 16 5 O -0.36 -10.19 9.94 -55.65 -0.55 -10.74 16 6 C 0.64 21.86 7.87 129.79 1.02 22.88 16 7 O -0.58 -22.48 9.08 19.77 0.18 -22.30 16 8 N -0.61 -20.97 5.39 -428.44 -2.31 -23.28 16 9 C 0.01 0.41 6.49 38.43 0.25 0.66 16 10 C 0.14 6.15 9.88 84.63 0.84 6.99 16 11 N -0.57 -28.61 9.07 -192.67 -1.75 -30.36 16 12 C 0.38 18.00 7.45 133.23 0.99 18.99 16 13 N -0.54 -27.11 5.42 -189.05 -1.02 -28.14 16 14 C -0.30 -16.15 9.70 84.03 0.82 -15.34 16 15 H 0.10 5.61 7.08 -2.91 -0.02 5.59 16 16 C -0.02 -1.14 5.50 84.85 0.47 -0.67 16 17 N -0.92 -48.13 13.05 21.64 0.28 -47.84 16 18 Si 1.00 41.88 29.55 68.60 2.03 43.90 16 19 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 20 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 21 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 22 C -0.08 -3.15 7.18 39.06 0.28 -2.87 16 23 N -0.57 -16.25 6.22 -190.68 -1.19 -17.43 16 24 H 0.43 10.08 8.96 -92.70 -0.83 9.25 16 25 C 0.28 6.51 12.97 180.03 2.34 8.84 16 26 N -0.53 -16.99 11.26 -191.64 -2.16 -19.15 16 27 C 0.10 4.00 7.22 39.75 0.29 4.28 16 28 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.06 1.73 5.88 -2.39 -0.01 1.72 16 31 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 32 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.06 1.76 5.88 -2.39 -0.01 1.75 16 35 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 36 H 0.06 1.34 8.14 -2.39 -0.02 1.33 16 37 H 0.42 12.43 8.91 -92.71 -0.83 11.60 16 38 H 0.16 7.25 5.77 -2.91 -0.02 7.23 16 39 H 0.40 19.09 7.89 -92.71 -0.73 18.35 16 40 H 0.28 13.71 8.31 -92.70 -0.77 12.94 16 41 H 0.27 2.65 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -70.13 345.03 1.36 -68.77 By element: Atomic # 1 Polarization: 49.55 SS G_CDS: -1.26 Total: 48.29 kcal Atomic # 6 Polarization: 29.16 SS G_CDS: 9.12 Total: 38.27 kcal Atomic # 7 Polarization: -158.05 SS G_CDS: -8.14 Total: -166.20 kcal Atomic # 8 Polarization: -32.67 SS G_CDS: -0.37 Total: -33.04 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.90 kcal Total: -70.13 1.36 -68.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155534979.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.367 kcal (2) G-P(sol) polarization free energy of solvation -70.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds