Wall clock time and date at job start Tue Mar 31 2020 12:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 113.99813 * 2 1 4 4 C 1.53000 * 109.47136 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47192 * 64.99306 * 4 3 2 6 6 C 1.36817 * 120.00255 * 263.64564 * 5 4 3 7 7 H 1.08002 * 120.00170 * 354.65445 * 6 5 4 8 8 C 1.39075 * 119.99889 * 174.64951 * 6 5 4 9 9 N 1.31341 * 119.99882 * 91.30521 * 8 6 5 10 10 Si 1.86802 * 120.00298 * 271.30252 * 8 6 5 11 11 H 1.48494 * 109.47072 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.46855 * 120.00247 * 10 8 6 13 13 H 1.48500 * 109.47296 * 239.99921 * 10 8 6 14 14 C 1.34779 * 119.99602 * 83.64843 * 5 4 3 15 15 O 1.21565 * 119.99719 * 184.36231 * 14 5 4 16 16 C 1.47982 * 120.00213 * 4.37007 * 14 5 4 17 17 N 1.33516 * 125.33045 * 353.73592 * 16 14 5 18 18 C 1.32503 * 109.74950 * 179.97438 * 17 16 14 19 19 N 1.33991 * 132.33055 * 180.02562 * 18 17 16 20 20 C 1.31268 * 120.87921 * 179.97438 * 19 18 17 21 21 C 1.50705 * 119.82006 * 179.97438 * 20 19 18 22 22 C 1.40163 * 120.35754 * 0.27734 * 20 19 18 23 23 C 1.35698 * 119.26852 * 359.46249 * 22 20 19 24 24 C 1.50695 * 120.48282 * 180.24321 * 23 22 20 25 25 N 1.36152 * 119.02851 * 0.51065 * 23 22 20 26 26 N 1.32058 * 125.33596 * 173.70980 * 16 14 5 27 27 H 1.09000 * 109.47195 * 300.00198 * 1 2 3 28 28 H 1.08997 * 109.47003 * 60.00427 * 1 2 3 29 29 H 1.09001 * 109.46993 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47150 * 59.99799 * 3 2 1 31 31 H 1.09004 * 109.47162 * 299.99710 * 3 2 1 32 32 H 1.09000 * 109.46658 * 304.99628 * 4 3 2 33 33 H 1.08995 * 109.47086 * 185.00148 * 4 3 2 34 34 H 0.97003 * 120.00296 * 184.91833 * 9 8 6 35 35 H 1.08999 * 109.46736 * 90.00566 * 21 20 19 36 36 H 1.08994 * 109.46871 * 209.99912 * 21 20 19 37 37 H 1.09000 * 109.47177 * 329.99994 * 21 20 19 38 38 H 1.07998 * 120.36365 * 179.69631 * 22 20 19 39 39 H 1.08999 * 109.46936 * 270.26938 * 24 23 22 40 40 H 1.09004 * 109.47562 * 30.27025 * 24 23 22 41 41 H 1.08998 * 109.46939 * 150.26858 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.2220 -0.7806 -1.3001 7 1 4.1759 -1.3703 -0.3965 8 6 4.5316 -1.3885 -2.5121 9 7 5.7847 -1.5026 -2.8883 10 14 3.1651 -2.0428 -3.6049 11 1 1.8518 -1.7922 -2.9588 12 1 3.2093 -1.3531 -4.9193 13 1 3.3480 -3.5028 -3.8056 14 6 4.1381 1.3187 -2.3577 15 8 4.4262 0.7931 -3.4154 16 6 3.9659 2.7866 -2.2836 17 7 3.5372 3.4606 -1.2138 18 6 3.4999 4.7567 -1.4865 19 7 3.1469 5.8228 -0.7556 20 6 3.1974 7.0331 -1.2615 21 6 2.7943 8.2152 -0.4181 22 6 3.6181 7.2312 -2.5837 23 6 3.9831 6.1592 -3.3315 24 6 4.4450 6.3413 -4.7543 25 7 3.9206 4.9164 -2.7792 26 7 4.2127 3.6351 -3.2649 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.6885 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8514 0.5683 0.8410 33 1 3.9785 2.1765 0.0889 34 1 5.9975 -1.8613 -3.7641 35 1 3.6664 8.5968 0.1129 36 1 2.3885 8.9975 -1.0595 37 1 2.0367 7.9063 0.3021 38 1 3.6550 8.2264 -3.0015 39 1 3.5869 6.2886 -5.4244 40 1 4.9279 7.3130 -4.8581 41 1 5.1543 5.5541 -5.0095 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160823181.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:43 Heat of formation + Delta-G solvation = 101.866192 kcal Electronic energy + Delta-G solvation = -27549.153665 eV Core-core repulsion = 23662.259029 eV Total energy + Delta-G solvation = -3886.894636 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.143 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.40173 -39.10014 -37.97498 -36.89453 -35.18613 -34.06915 -32.91265 -31.99559 -30.95056 -28.94827 -28.72822 -27.85117 -26.13442 -25.45094 -23.59239 -22.63833 -22.04105 -21.09407 -19.57246 -18.24132 -17.42643 -16.94899 -16.37862 -16.10231 -15.62040 -15.08783 -14.88847 -14.63604 -14.26567 -14.17270 -13.95976 -13.80512 -13.65176 -13.21300 -13.05515 -12.75105 -12.52123 -12.46842 -12.26600 -12.16628 -11.79527 -11.66133 -11.35007 -11.24902 -11.13804 -10.98136 -10.57322 -10.40756 -9.98021 -9.75822 -9.37643 -9.13286 -9.03960 -8.82628 -8.41140 -8.28239 -7.66100 -6.96748 -3.35880 0.55982 0.96010 2.26713 2.57628 3.26833 3.49402 3.52946 3.58571 3.65904 3.98004 4.10366 4.34081 4.45561 4.50944 4.74354 4.85298 4.85684 5.04088 5.13085 5.21268 5.25560 5.30587 5.36662 5.50146 5.64966 5.67798 5.74597 5.78424 5.98145 6.00330 6.06528 6.14593 6.18549 6.46428 6.51432 6.54609 6.72099 6.96755 7.20429 7.74905 7.79265 7.84556 8.36695 8.52896 9.10097 9.32167 9.93928 10.27995 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.015083 B = 0.004765 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.891386 B = 5874.629643 C = 7051.001057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.373 6.373 3 C 0.065 3.935 4 C 0.095 3.905 5 N -0.342 5.342 6 C -0.409 4.409 7 H 0.118 0.882 8 C 0.209 3.791 9 N -0.680 5.680 10 Si 0.844 3.156 11 H -0.259 1.259 12 H -0.269 1.269 13 H -0.290 1.290 14 C 0.403 3.597 15 O -0.578 6.578 16 C 0.272 3.728 17 N -0.522 5.522 18 C 0.436 3.564 19 N -0.470 5.470 20 C 0.222 3.778 21 C -0.103 4.103 22 C -0.251 4.251 23 C 0.207 3.793 24 C -0.120 4.120 25 N -0.332 5.332 26 N -0.316 5.316 27 H 0.032 0.968 28 H 0.031 0.969 29 H 0.079 0.921 30 H 0.048 0.952 31 H 0.046 0.954 32 H 0.076 0.924 33 H 0.120 0.880 34 H 0.286 0.714 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.163 0.837 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.454 17.292 2.880 18.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.291 6.291 3 C -0.012 4.012 4 C -0.029 4.029 5 N -0.054 5.054 6 C -0.532 4.532 7 H 0.135 0.865 8 C -0.029 4.029 9 N -0.299 5.299 10 Si 0.664 3.336 11 H -0.183 1.183 12 H -0.194 1.194 13 H -0.218 1.218 14 C 0.199 3.801 15 O -0.469 6.469 16 C -0.002 4.002 17 N -0.258 5.258 18 C 0.076 3.924 19 N -0.188 5.188 20 C 0.056 3.944 21 C -0.160 4.160 22 C -0.277 4.277 23 C 0.086 3.914 24 C -0.177 4.177 25 N -0.112 5.112 26 N -0.149 5.149 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.097 0.903 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.095 0.905 33 H 0.137 0.863 34 H 0.098 0.902 35 H 0.107 0.893 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.181 0.819 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.024 15.944 2.844 16.957 hybrid contribution -0.739 0.553 -1.337 1.625 sum -5.763 16.497 1.507 17.539 Atomic orbital electron populations 1.22620 0.82908 1.01885 0.98884 1.88066 1.17940 1.27972 1.95137 1.22815 0.94627 0.84066 0.99699 1.22121 0.92415 1.00727 0.87686 1.43567 1.47780 1.06876 1.07154 1.18780 1.55609 0.82055 0.96782 0.86483 1.25063 0.94391 0.88516 0.94883 1.70570 1.22452 1.18906 1.18009 0.87511 0.87590 0.76236 0.82245 1.18291 1.19406 1.21787 1.15449 0.97809 0.80507 0.86307 1.90529 1.60406 1.68095 1.27891 1.24896 0.92672 0.97553 0.85075 1.71171 1.29406 0.98021 1.27215 1.23014 0.95079 0.93525 0.80797 1.67787 1.20767 0.96489 1.33768 1.21843 0.88589 0.92277 0.91654 1.20786 1.03062 0.92776 0.99400 1.21349 1.11448 0.99183 0.95743 1.20747 0.92585 0.81234 0.96813 1.20999 1.03173 1.04524 0.88976 1.49199 1.42174 1.06979 1.12857 1.79007 1.32503 0.83711 1.19723 0.94996 0.95002 0.90269 0.93408 0.93583 0.90511 0.86313 0.90215 0.89265 0.89751 0.89613 0.81918 0.88989 0.88985 0.89130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 11.01 101.05 1.11 1.68 16 2 O -0.37 -7.89 10.48 -35.23 -0.37 -8.26 16 3 C 0.07 1.34 5.68 37.16 0.21 1.55 16 4 C 0.09 2.10 5.35 -4.04 -0.02 2.07 16 5 N -0.34 -9.09 2.58 -115.85 -0.30 -9.39 16 6 C -0.41 -11.27 9.31 -15.02 -0.14 -11.41 16 7 H 0.12 3.12 7.99 -52.49 -0.42 2.70 16 8 C 0.21 5.81 3.01 -17.45 -0.05 5.75 16 9 N -0.68 -18.92 13.53 55.50 0.75 -18.16 16 10 Si 0.84 21.79 28.27 -169.99 -4.81 16.99 16 11 H -0.26 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.27 -7.38 7.11 56.52 0.40 -6.98 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 14 C 0.40 11.45 7.56 -12.27 -0.09 11.35 16 15 O -0.58 -18.13 13.08 5.31 0.07 -18.06 16 16 C 0.27 6.94 7.47 -156.75 -1.17 5.77 16 17 N -0.52 -11.85 6.51 -12.25 -0.08 -11.93 16 18 C 0.44 8.83 8.98 -323.03 -2.90 5.93 16 19 N -0.47 -7.86 10.40 -10.01 -0.10 -7.96 16 20 C 0.22 2.63 6.83 -82.11 -0.56 2.07 16 21 C -0.10 -0.70 10.19 36.01 0.37 -0.33 16 22 C -0.25 -2.62 9.39 -39.77 -0.37 -2.99 16 23 C 0.21 2.89 6.86 -81.59 -0.56 2.33 16 24 C -0.12 -1.25 10.12 36.00 0.36 -0.89 16 25 N -0.33 -6.51 3.91 -10.07 -0.04 -6.55 16 26 N -0.32 -7.64 12.68 32.01 0.41 -7.23 16 27 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.05 1.03 7.25 -51.93 -0.38 0.65 16 32 H 0.08 1.58 7.94 -51.93 -0.41 1.17 16 33 H 0.12 2.61 5.26 -51.93 -0.27 2.34 16 34 H 0.29 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.34 8.08 -51.93 -0.42 -0.08 16 37 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.16 0.92 8.06 -52.49 -0.42 0.50 16 39 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.09 0.60 8.09 -51.93 -0.42 0.18 16 41 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 350.64 15.07 5.28 5.28 Total: -1.00 -36.95 350.64 -8.27 -45.21 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: -5.26 Total: -2.81 kcal Atomic # 6 Polarization: 26.70 SS G_CDS: -3.82 Total: 22.88 kcal Atomic # 7 Polarization: -61.87 SS G_CDS: 0.63 Total: -61.23 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: -0.30 Total: -26.33 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.81 Total: 16.99 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -36.95 -8.27 -45.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160823181.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.079 kcal (2) G-P(sol) polarization free energy of solvation -36.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds