Wall clock time and date at job start Tue Mar 31 2020 12:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 113.99813 * 2 1 4 4 C 1.53000 * 109.47136 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47192 * 64.99306 * 4 3 2 6 6 C 1.36817 * 120.00255 * 263.64564 * 5 4 3 7 7 H 1.08002 * 120.00170 * 354.65445 * 6 5 4 8 8 C 1.39075 * 119.99889 * 174.64951 * 6 5 4 9 9 N 1.31341 * 119.99882 * 91.30521 * 8 6 5 10 10 Si 1.86802 * 120.00298 * 271.30252 * 8 6 5 11 11 H 1.48494 * 109.47072 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.46855 * 120.00247 * 10 8 6 13 13 H 1.48500 * 109.47296 * 239.99921 * 10 8 6 14 14 C 1.34779 * 119.99602 * 83.64843 * 5 4 3 15 15 O 1.21565 * 119.99719 * 184.36231 * 14 5 4 16 16 C 1.47982 * 120.00213 * 4.37007 * 14 5 4 17 17 N 1.33516 * 125.33045 * 353.73592 * 16 14 5 18 18 C 1.32503 * 109.74950 * 179.97438 * 17 16 14 19 19 N 1.33991 * 132.33055 * 180.02562 * 18 17 16 20 20 C 1.31268 * 120.87921 * 179.97438 * 19 18 17 21 21 C 1.50705 * 119.82006 * 179.97438 * 20 19 18 22 22 C 1.40163 * 120.35754 * 0.27734 * 20 19 18 23 23 C 1.35698 * 119.26852 * 359.46249 * 22 20 19 24 24 C 1.50695 * 120.48282 * 180.24321 * 23 22 20 25 25 N 1.36152 * 119.02851 * 0.51065 * 23 22 20 26 26 N 1.32058 * 125.33596 * 173.70980 * 16 14 5 27 27 H 1.09000 * 109.47195 * 300.00198 * 1 2 3 28 28 H 1.08997 * 109.47003 * 60.00427 * 1 2 3 29 29 H 1.09001 * 109.46993 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47150 * 59.99799 * 3 2 1 31 31 H 1.09004 * 109.47162 * 299.99710 * 3 2 1 32 32 H 1.09000 * 109.46658 * 304.99628 * 4 3 2 33 33 H 1.08995 * 109.47086 * 185.00148 * 4 3 2 34 34 H 0.97003 * 120.00296 * 184.91833 * 9 8 6 35 35 H 1.08999 * 109.46736 * 90.00566 * 21 20 19 36 36 H 1.08994 * 109.46871 * 209.99912 * 21 20 19 37 37 H 1.09000 * 109.47177 * 329.99994 * 21 20 19 38 38 H 1.07998 * 120.36365 * 179.69631 * 22 20 19 39 39 H 1.08999 * 109.46936 * 270.26938 * 24 23 22 40 40 H 1.09004 * 109.47562 * 30.27025 * 24 23 22 41 41 H 1.08998 * 109.46939 * 150.26858 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.2220 -0.7806 -1.3001 7 1 4.1759 -1.3703 -0.3965 8 6 4.5316 -1.3885 -2.5121 9 7 5.7847 -1.5026 -2.8883 10 14 3.1651 -2.0428 -3.6049 11 1 1.8518 -1.7922 -2.9588 12 1 3.2093 -1.3531 -4.9193 13 1 3.3480 -3.5028 -3.8056 14 6 4.1381 1.3187 -2.3577 15 8 4.4262 0.7931 -3.4154 16 6 3.9659 2.7866 -2.2836 17 7 3.5372 3.4606 -1.2138 18 6 3.4999 4.7567 -1.4865 19 7 3.1469 5.8228 -0.7556 20 6 3.1974 7.0331 -1.2615 21 6 2.7943 8.2152 -0.4181 22 6 3.6181 7.2312 -2.5837 23 6 3.9831 6.1592 -3.3315 24 6 4.4450 6.3413 -4.7543 25 7 3.9206 4.9164 -2.7792 26 7 4.2127 3.6351 -3.2649 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.6885 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8514 0.5683 0.8410 33 1 3.9785 2.1765 0.0889 34 1 5.9975 -1.8613 -3.7641 35 1 3.6664 8.5968 0.1129 36 1 2.3885 8.9975 -1.0595 37 1 2.0367 7.9063 0.3021 38 1 3.6550 8.2264 -3.0015 39 1 3.5869 6.2886 -5.4244 40 1 4.9279 7.3130 -4.8581 41 1 5.1543 5.5541 -5.0095 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160823181.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:42 Heat of formation + Delta-G solvation = 76.678750 kcal Electronic energy + Delta-G solvation = -27550.245875 eV Core-core repulsion = 23662.259029 eV Total energy + Delta-G solvation = -3887.986845 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.143 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.88209 -40.72695 -39.56339 -38.55780 -36.41465 -36.05348 -34.88363 -33.26521 -32.36536 -30.66797 -29.98700 -28.76778 -27.81311 -27.00092 -25.31116 -24.10990 -23.47952 -22.50345 -21.40201 -19.68344 -18.85675 -18.74001 -17.90990 -17.72597 -17.20599 -16.91474 -16.49672 -16.01135 -15.88726 -15.72500 -15.23071 -15.14709 -14.68896 -14.53945 -14.46629 -14.21236 -14.13598 -13.84543 -13.44201 -13.40815 -13.07191 -13.00253 -12.94209 -12.85237 -12.69309 -12.60337 -12.43055 -12.13981 -11.86939 -11.09081 -11.01561 -10.93278 -10.54359 -10.53632 -10.32242 -9.81070 -9.76143 -9.05756 -5.48570 -0.58442 -0.34548 0.88635 0.93041 1.22062 1.45541 1.54707 1.98647 2.22151 2.24980 2.47278 2.66723 2.82820 2.99995 3.15534 3.30507 3.58067 3.87799 4.10839 4.23297 4.29167 4.31931 4.36944 4.47590 4.50247 4.54475 4.58324 4.70018 4.76761 4.81583 4.83761 4.87155 4.88604 4.96255 5.08583 5.17684 5.29666 5.36595 5.42137 5.82603 6.33501 6.45123 6.49472 6.76839 7.11510 7.32247 7.90073 8.22117 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.015083 B = 0.004765 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.891386 B = 5874.629643 C = 7051.001057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.403 6.403 3 C 0.079 3.921 4 C 0.094 3.906 5 N -0.344 5.344 6 C -0.460 4.460 7 H 0.115 0.885 8 C 0.199 3.801 9 N -0.704 5.704 10 Si 0.878 3.122 11 H -0.270 1.270 12 H -0.298 1.298 13 H -0.260 1.260 14 C 0.385 3.615 15 O -0.623 6.623 16 C 0.263 3.737 17 N -0.539 5.539 18 C 0.426 3.574 19 N -0.494 5.494 20 C 0.229 3.771 21 C -0.101 4.101 22 C -0.205 4.205 23 C 0.171 3.829 24 C -0.116 4.116 25 N -0.341 5.341 26 N -0.343 5.343 27 H 0.062 0.938 28 H 0.025 0.975 29 H 0.094 0.906 30 H 0.080 0.920 31 H 0.021 0.979 32 H 0.085 0.915 33 H 0.119 0.881 34 H 0.292 0.708 35 H 0.112 0.888 36 H 0.128 0.872 37 H 0.082 0.918 38 H 0.231 0.769 39 H 0.103 0.897 40 H 0.143 0.857 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.778 22.709 3.483 23.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.322 6.322 3 C 0.002 3.998 4 C -0.029 4.029 5 N -0.055 5.055 6 C -0.582 4.582 7 H 0.132 0.868 8 C -0.038 4.038 9 N -0.325 5.325 10 Si 0.700 3.300 11 H -0.194 1.194 12 H -0.225 1.225 13 H -0.185 1.185 14 C 0.181 3.819 15 O -0.517 6.517 16 C -0.015 4.015 17 N -0.277 5.277 18 C 0.066 3.934 19 N -0.214 5.214 20 C 0.067 3.933 21 C -0.158 4.158 22 C -0.229 4.229 23 C 0.055 3.945 24 C -0.173 4.173 25 N -0.122 5.122 26 N -0.178 5.178 27 H 0.081 0.919 28 H 0.044 0.956 29 H 0.112 0.888 30 H 0.098 0.902 31 H 0.040 0.960 32 H 0.104 0.896 33 H 0.137 0.863 34 H 0.104 0.896 35 H 0.130 0.870 36 H 0.146 0.854 37 H 0.101 0.899 38 H 0.248 0.752 39 H 0.121 0.879 40 H 0.161 0.839 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.361 21.401 3.479 22.596 hybrid contribution -0.410 -0.370 -1.531 1.628 sum -6.771 21.031 1.948 22.180 Atomic orbital electron populations 1.22854 0.80614 1.03347 1.00051 1.88021 1.20576 1.28316 1.95336 1.22616 0.93288 0.84005 0.99870 1.22271 0.93852 1.00495 0.86290 1.43577 1.47399 1.06549 1.07962 1.18702 1.59648 0.82927 0.96874 0.86780 1.25438 0.94849 0.88065 0.95431 1.70574 1.23357 1.19902 1.18630 0.86972 0.86089 0.77287 0.79681 1.19426 1.22494 1.18544 1.15902 0.97870 0.81847 0.86245 1.90449 1.62010 1.69702 1.29560 1.24296 0.93992 0.96653 0.86565 1.70970 1.30419 0.99569 1.26695 1.23236 0.95019 0.93778 0.81353 1.68005 1.22373 0.97193 1.33818 1.23058 0.85317 0.91970 0.93001 1.21091 1.03984 0.91114 0.99620 1.22242 1.05782 1.00661 0.94200 1.21857 0.93701 0.79822 0.99143 1.21152 1.03127 1.06073 0.86910 1.49154 1.42884 1.07114 1.13038 1.78751 1.32540 0.85909 1.20566 0.91925 0.95579 0.88789 0.90207 0.96045 0.89617 0.86331 0.89634 0.86973 0.85387 0.89896 0.75238 0.87858 0.83870 0.92390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.90 11.01 113.37 1.25 2.15 16 2 O -0.40 -17.44 10.48 -148.98 -1.56 -19.00 16 3 C 0.08 3.33 5.68 71.98 0.41 3.73 16 4 C 0.09 4.35 5.35 86.38 0.46 4.81 16 5 N -0.34 -19.40 2.58 -638.70 -1.65 -21.05 16 6 C -0.46 -26.94 9.31 84.12 0.78 -26.16 16 7 H 0.11 6.50 7.99 -2.91 -0.02 6.48 16 8 C 0.20 11.65 3.01 84.97 0.26 11.91 16 9 N -0.70 -41.32 13.53 21.68 0.29 -41.03 16 10 Si 0.88 47.01 28.27 68.60 1.94 48.95 16 11 H -0.27 -14.72 7.11 99.48 0.71 -14.02 16 12 H -0.30 -17.23 7.11 99.48 0.71 -16.52 16 13 H -0.26 -12.38 7.11 99.48 0.71 -11.68 16 14 C 0.39 23.30 7.56 86.83 0.66 23.95 16 15 O -0.62 -41.68 13.08 -3.92 -0.05 -41.73 16 16 C 0.26 14.09 7.47 137.32 1.03 15.12 16 17 N -0.54 -25.21 6.51 -192.67 -1.25 -26.46 16 18 C 0.43 17.04 8.98 261.56 2.35 19.39 16 19 N -0.49 -15.22 10.40 -185.58 -1.93 -17.15 16 20 C 0.23 4.19 6.83 43.11 0.29 4.48 16 21 C -0.10 -0.67 10.19 71.24 0.73 0.06 16 22 C -0.20 -2.92 9.39 22.15 0.21 -2.72 16 23 C 0.17 4.18 6.86 41.30 0.28 4.47 16 24 C -0.12 -2.02 10.12 71.23 0.72 -1.30 16 25 N -0.34 -13.17 3.91 -185.76 -0.73 -13.89 16 26 N -0.34 -17.25 12.68 -52.65 -0.67 -17.92 16 27 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 30 H 0.08 2.76 8.14 -2.39 -0.02 2.75 16 31 H 0.02 0.99 7.25 -2.39 -0.02 0.98 16 32 H 0.09 3.69 7.94 -2.39 -0.02 3.67 16 33 H 0.12 5.46 5.26 -2.39 -0.01 5.44 16 34 H 0.29 15.79 8.31 -92.71 -0.77 15.01 16 35 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.13 -0.13 8.08 -2.39 -0.02 -0.15 16 37 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.23 0.26 8.06 -2.91 -0.02 0.24 16 39 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.14 0.99 8.09 -2.38 -0.02 0.97 16 41 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -91.83 350.64 4.88 -86.95 By element: Atomic # 1 Polarization: 1.37 SS G_CDS: 1.06 Total: 2.43 kcal Atomic # 6 Polarization: 50.47 SS G_CDS: 9.42 Total: 59.90 kcal Atomic # 7 Polarization: -131.56 SS G_CDS: -5.93 Total: -137.49 kcal Atomic # 8 Polarization: -59.12 SS G_CDS: -1.61 Total: -60.74 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 1.94 Total: 48.95 kcal Total: -91.83 4.88 -86.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160823181.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.629 kcal (2) G-P(sol) polarization free energy of solvation -91.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds