Wall clock time and date at job start Tue Mar 31 2020 13:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47326 * 2 1 4 4 C 1.52998 * 109.47283 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.46940 * 179.97438 * 4 3 2 6 6 C 1.36936 * 120.00048 * 275.65280 * 5 4 3 7 7 H 1.07998 * 120.00046 * 34.01013 * 6 5 4 8 8 C 1.38815 * 119.99859 * 214.01215 * 6 5 4 9 9 N 1.31615 * 120.00109 * 22.90796 * 8 6 5 10 10 Si 1.86800 * 119.99867 * 202.90493 * 8 6 5 11 11 H 1.48505 * 109.46826 * 60.00144 * 10 8 6 12 12 H 1.48504 * 109.47080 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47197 * 300.00464 * 10 8 6 14 14 C 1.46506 * 119.99916 * 95.66115 * 5 4 3 15 15 C 1.50705 * 109.46494 * 269.99273 * 14 5 4 16 16 C 1.38264 * 119.97795 * 270.32264 * 15 14 5 17 17 C 1.38172 * 120.02769 * 180.28220 * 16 15 14 18 18 C 1.38488 * 119.97217 * 359.41748 * 17 16 15 19 19 F 1.35101 * 120.02308 * 180.25632 * 18 17 16 20 20 C 1.38435 * 119.94761 * 0.28489 * 18 17 16 21 21 C 1.50705 * 120.01074 * 180.02562 * 20 18 17 22 22 F 1.39902 * 109.46823 * 179.97438 * 21 20 18 23 23 F 1.39903 * 109.46537 * 299.99319 * 21 20 18 24 24 F 1.39893 * 109.47132 * 59.99281 * 21 20 18 25 25 C 1.38217 * 119.97462 * 359.97438 * 20 18 17 26 26 H 1.09000 * 109.46987 * 299.99792 * 1 2 3 27 27 H 1.09003 * 109.47513 * 59.99706 * 1 2 3 28 28 H 1.08995 * 109.47409 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46987 * 240.00208 * 2 1 3 30 30 H 1.09003 * 109.47513 * 120.00294 * 2 1 3 31 31 H 1.09000 * 109.46918 * 60.00166 * 3 2 1 32 32 H 1.08998 * 109.46772 * 300.00194 * 3 2 1 33 33 H 1.08996 * 109.46936 * 59.99709 * 4 3 2 34 34 H 1.09006 * 109.46750 * 300.00197 * 4 3 2 35 35 H 0.97008 * 120.00207 * 179.97438 * 9 8 6 36 36 H 1.08996 * 109.47362 * 149.99962 * 14 5 4 37 37 H 1.09002 * 109.47365 * 29.98920 * 14 5 4 38 38 H 1.08000 * 119.98556 * 359.97438 * 16 15 14 39 39 H 1.07994 * 120.01736 * 179.69804 * 17 16 15 40 40 H 1.08000 * 119.98425 * 180.02562 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 7 4.0583 2.8237 -0.0013 6 6 4.1759 3.5078 -1.1816 7 1 3.4715 3.3307 -1.9809 8 6 5.2006 4.4289 -1.3509 9 7 6.2914 4.3415 -0.6197 10 14 5.0311 5.7924 -2.6164 11 1 3.8481 6.6279 -2.2884 12 1 6.2531 6.6361 -2.6017 13 1 4.8576 5.1968 -3.9656 14 6 4.4210 3.4729 1.2610 15 6 3.2123 4.1670 1.8342 16 6 2.9445 5.4804 1.4953 17 6 1.8398 6.1196 2.0248 18 6 0.9940 5.4404 2.8857 19 9 -0.0892 6.0627 3.4000 20 6 1.2598 4.1234 3.2194 21 6 0.3401 3.3827 4.1557 22 9 0.8126 2.0786 4.3388 23 9 0.3004 4.0422 5.3889 24 9 -0.9465 3.3395 3.6083 25 6 2.3684 3.4878 2.6927 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9330 0.9288 -0.8908 34 1 3.9337 0.9285 0.8892 35 1 7.0076 4.9850 -0.7382 36 1 5.2083 4.2047 1.0801 37 1 4.7775 2.7223 1.9664 38 1 3.6017 6.0086 0.8204 39 1 1.6334 7.1470 1.7639 40 1 2.5757 2.4602 2.9526 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204489108.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:57 Heat of formation + Delta-G solvation = -176.716286 kcal Electronic energy + Delta-G solvation = -28221.506317 eV Core-core repulsion = 23728.461985 eV Total energy + Delta-G solvation = -4493.044332 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.125 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -51.30471 -50.11130 -48.73696 -48.72740 -40.43382 -37.86906 -35.60329 -33.47656 -33.11318 -32.10853 -29.42763 -27.41726 -27.10359 -25.43418 -23.74034 -23.04131 -22.05566 -21.70871 -19.61251 -19.57474 -19.42287 -18.64762 -18.17762 -17.38926 -16.81298 -16.69527 -16.27630 -15.75961 -15.62692 -15.58463 -15.45223 -15.23522 -15.15640 -15.14427 -14.88427 -14.82165 -14.60693 -14.38083 -13.79528 -13.73974 -13.52136 -13.33260 -13.06759 -12.85540 -12.73199 -12.50394 -12.27492 -12.07998 -11.99906 -11.85241 -11.78246 -11.60135 -11.26206 -10.49250 -10.34798 -9.64029 -8.59709 -7.82998 -5.39421 -0.21772 0.10064 1.47514 1.51955 1.52245 1.57108 2.33703 2.54000 2.55491 2.83177 3.05530 3.23958 3.29842 3.68624 3.77721 3.97993 4.14998 4.17994 4.24053 4.33166 4.43815 4.52240 4.58632 4.78539 4.87898 4.91270 4.94120 5.02751 5.07652 5.09325 5.13745 5.20579 5.40840 5.52021 5.53682 5.65314 5.71137 5.73168 5.80439 6.47218 7.16627 7.85424 8.36706 9.13315 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.012169 B = 0.005515 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.347867 B = 5075.768080 C = 6414.911100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C -0.127 4.127 4 C 0.145 3.855 5 N -0.588 5.588 6 C -0.258 4.258 7 H 0.051 0.949 8 C -0.025 4.025 9 N -0.909 5.909 10 Si 0.941 3.059 11 H -0.275 1.275 12 H -0.292 1.292 13 H -0.283 1.283 14 C 0.173 3.827 15 C -0.087 4.087 16 C -0.050 4.050 17 C -0.147 4.147 18 C 0.120 3.880 19 F -0.134 7.134 20 C -0.228 4.228 21 C 0.518 3.482 22 F -0.170 7.170 23 F -0.177 7.177 24 F -0.178 7.178 25 C -0.042 4.042 26 H 0.047 0.953 27 H 0.046 0.954 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.051 0.949 32 H 0.035 0.965 33 H 0.033 0.967 34 H 0.050 0.950 35 H 0.255 0.745 36 H 0.088 0.912 37 H 0.047 0.953 38 H 0.129 0.871 39 H 0.164 0.836 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.719 -1.906 7.869 12.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.156 4.156 3 C -0.166 4.166 4 C 0.020 3.980 5 N -0.307 5.307 6 C -0.388 4.388 7 H 0.069 0.931 8 C -0.223 4.223 9 N -0.553 5.553 10 Si 0.769 3.231 11 H -0.201 1.201 12 H -0.218 1.218 13 H -0.209 1.209 14 C 0.047 3.953 15 C -0.091 4.091 16 C -0.069 4.069 17 C -0.165 4.165 18 C 0.100 3.900 19 F -0.113 7.113 20 C -0.230 4.230 21 C 0.464 3.536 22 F -0.152 7.152 23 F -0.158 7.158 24 F -0.160 7.160 25 C -0.061 4.061 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.106 0.894 37 H 0.065 0.935 38 H 0.147 0.853 39 H 0.181 0.819 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -9.594 -1.851 7.881 12.553 hybrid contribution -0.250 0.845 -0.607 1.069 sum -9.843 -1.006 7.275 12.281 Atomic orbital electron populations 1.21731 0.95556 1.01895 1.01228 1.21460 0.96060 0.96052 1.02042 1.22070 0.97533 0.96569 1.00471 1.21033 0.92615 0.85297 0.99087 1.43935 1.75687 1.09331 1.01778 1.19084 1.07032 1.19038 0.93682 0.93103 1.25529 0.93936 1.02907 0.99880 1.70053 1.05015 1.36477 1.43710 0.85771 0.76956 0.80453 0.79921 1.20053 1.21812 1.20928 1.20009 0.92534 0.96995 0.85776 1.21183 0.99505 0.94135 0.94236 1.21227 0.95518 0.94432 0.95708 1.21296 0.94916 1.02195 0.98130 1.17254 0.85830 0.89848 0.97075 1.91513 1.52118 1.82355 1.85303 1.20017 1.01125 0.95174 1.06707 1.17986 0.79007 0.77295 0.79293 1.93173 1.88142 1.38330 1.95509 1.93209 1.96484 1.80815 1.45318 1.93208 1.40837 1.96355 1.85577 1.20825 0.90872 1.00196 0.94167 0.93420 0.93455 0.91477 0.92129 0.91436 0.93047 0.94569 0.94833 0.93131 0.93600 0.89429 0.93469 0.85328 0.81854 0.83339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 9.91 71.98 0.71 -2.78 16 2 C -0.12 -3.13 5.93 30.60 0.18 -2.95 16 3 C -0.13 -4.22 5.51 30.59 0.17 -4.05 16 4 C 0.14 5.50 5.72 86.38 0.49 6.00 16 5 N -0.59 -26.12 2.44 -706.34 -1.73 -27.84 16 6 C -0.26 -12.85 9.48 84.03 0.80 -12.05 16 7 H 0.05 2.61 7.93 -2.91 -0.02 2.59 16 8 C -0.02 -1.23 4.95 84.86 0.42 -0.81 16 9 N -0.91 -47.90 11.31 21.65 0.24 -47.65 16 10 Si 0.94 40.91 29.61 68.60 2.03 42.94 16 11 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 12 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 13 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 14 C 0.17 7.12 5.46 85.63 0.47 7.58 16 15 C -0.09 -3.10 5.44 -19.86 -0.11 -3.20 16 16 C -0.05 -1.70 9.70 22.26 0.22 -1.48 16 17 C -0.15 -4.29 10.03 22.31 0.22 -4.07 16 18 C 0.12 3.61 7.13 22.38 0.16 3.77 16 19 F -0.13 -3.98 16.47 44.97 0.74 -3.24 16 20 C -0.23 -6.88 5.38 -19.82 -0.11 -6.99 16 21 C 0.52 14.70 3.03 71.24 0.22 14.92 16 22 F -0.17 -4.59 15.97 44.97 0.72 -3.87 16 23 F -0.18 -4.99 17.05 44.97 0.77 -4.23 16 24 F -0.18 -5.20 17.05 44.97 0.77 -4.43 16 25 C -0.04 -1.31 7.25 22.26 0.16 -1.14 16 26 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.05 1.73 6.13 -2.39 -0.01 1.71 16 32 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.03 1.34 8.08 -2.39 -0.02 1.32 16 34 H 0.05 1.76 7.83 -2.38 -0.02 1.74 16 35 H 0.25 13.08 8.31 -92.70 -0.77 12.31 16 36 H 0.09 4.15 5.26 -2.39 -0.01 4.14 16 37 H 0.05 1.82 7.80 -2.39 -0.02 1.80 16 38 H 0.13 4.67 8.06 -2.91 -0.02 4.65 16 39 H 0.16 3.85 8.06 -2.91 -0.02 3.83 16 40 H 0.15 4.27 7.12 -2.91 -0.02 4.25 16 Total: -1.00 -52.37 349.58 8.61 -43.77 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: 1.06 Total: 11.83 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: 4.00 Total: -7.26 kcal Atomic # 7 Polarization: -74.02 SS G_CDS: -1.48 Total: -75.50 kcal Atomic # 9 Polarization: -18.77 SS G_CDS: 2.99 Total: -15.78 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.94 kcal Total: -52.37 8.61 -43.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204489108.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.950 kcal (2) G-P(sol) polarization free energy of solvation -52.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds