Wall clock time and date at job start Tue Mar 31 2020 12:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36669 * 120.91202 * 2 1 4 4 C 1.39226 * 119.94686 * 180.02562 * 3 2 1 5 5 N 1.31151 * 121.74455 * 0.02562 * 4 3 2 6 6 C 1.33699 * 121.31470 * 359.96037 * 5 4 3 7 7 C 1.40447 * 121.03721 * 180.02562 * 6 5 4 8 8 C 1.36591 * 119.71674 * 180.02562 * 7 6 5 9 9 O 1.35832 * 119.52375 * 179.97438 * 8 7 6 10 10 C 1.42898 * 117.00252 * 185.30829 * 9 8 7 11 11 H 1.09000 * 109.47184 * 35.44443 * 10 9 8 12 12 C 1.50710 * 109.46777 * 275.44983 * 10 9 8 13 13 H 1.07996 * 119.99758 * 328.41204 * 12 10 9 14 14 C 1.37870 * 119.99823 * 148.40658 * 12 10 9 15 15 N 1.31516 * 120.00084 * 174.65160 * 14 12 10 16 16 Si 1.86803 * 120.00380 * 354.65250 * 14 12 10 17 17 H 1.48499 * 109.46875 * 91.80806 * 16 14 12 18 18 H 1.48496 * 109.47545 * 211.81138 * 16 14 12 19 19 H 1.48501 * 109.46974 * 331.80999 * 16 14 12 20 20 C 1.50697 * 109.47409 * 155.45091 * 10 9 8 21 21 C 1.38235 * 119.99882 * 37.16571 * 20 10 9 22 22 C 1.38235 * 119.99724 * 179.79299 * 21 20 10 23 23 C 1.38234 * 120.00371 * 0.43203 * 22 21 20 24 24 C 1.38238 * 119.99603 * 359.81760 * 23 22 21 25 25 C 1.38230 * 120.00028 * 359.97438 * 24 23 22 26 26 C 1.39884 * 120.95184 * 0.27403 * 8 7 6 27 27 C 1.35992 * 120.80588 * 359.45850 * 26 8 7 28 28 C 1.40513 * 119.68908 * 0.51414 * 27 26 8 29 29 H 1.09006 * 109.46940 * 269.97920 * 1 2 3 30 30 H 1.09002 * 109.47281 * 29.97411 * 1 2 3 31 31 H 1.08996 * 109.47611 * 149.97717 * 1 2 3 32 32 H 1.07999 * 120.02833 * 0.02562 * 3 2 1 33 33 H 1.07999 * 119.12931 * 179.97438 * 4 3 2 34 34 H 1.07996 * 120.14372 * 0.04236 * 7 6 5 35 35 H 0.97003 * 120.00404 * 179.97438 * 15 14 12 36 36 H 1.07993 * 120.00150 * 359.97438 * 21 20 10 37 37 H 1.07998 * 120.00001 * 180.27221 * 22 21 20 38 38 H 1.07998 * 120.00701 * 179.83972 * 23 22 21 39 39 H 1.08003 * 120.00145 * 179.97438 * 24 23 22 40 40 H 1.08007 * 120.00353 * 180.02562 * 25 24 23 41 41 H 1.07993 * 119.59347 * 179.70072 * 26 8 7 42 42 H 1.08007 * 120.15851 * 180.28160 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1726 0.0000 4 6 3.6012 1.1491 -0.0005 5 7 4.2723 0.0223 -0.0016 6 6 3.6466 -1.1592 -0.0013 7 6 4.3711 -2.3623 -0.0019 8 6 3.7042 -3.5544 -0.0022 9 8 4.4088 -4.7156 -0.0032 10 6 3.6615 -5.9279 -0.1213 11 1 2.8078 -5.7658 -0.7792 12 6 3.1733 -6.3515 1.2402 13 1 3.7593 -6.1250 2.1185 14 6 1.9785 -7.0282 1.3642 15 7 1.6030 -7.4901 2.5369 16 14 0.8929 -7.2890 -0.1335 17 1 1.2320 -8.5868 -0.7706 18 1 -0.5322 -7.2998 0.2839 19 1 1.1159 -6.1876 -1.1044 20 6 4.5420 -7.0067 -0.6973 21 6 5.8755 -7.0750 -0.3394 22 6 6.6821 -8.0672 -0.8645 23 6 6.1574 -8.9858 -1.7543 24 6 4.8252 -8.9144 -2.1161 25 6 4.0175 -7.9248 -1.5878 26 6 2.3060 -3.5965 -0.0076 27 6 1.5746 -2.4500 -0.0018 28 6 2.2295 -1.2068 -0.0011 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3634 -0.8897 -0.5142 32 1 1.6845 2.1166 0.0004 33 1 4.1427 2.0835 -0.0010 34 1 5.4509 -2.3451 -0.0018 35 1 0.7621 -7.9658 2.6243 36 1 6.2864 -6.3549 0.3527 37 1 7.7228 -8.1233 -0.5815 38 1 6.7882 -9.7595 -2.1665 39 1 4.4153 -9.6318 -2.8117 40 1 2.9765 -7.8692 -1.8701 41 1 1.8012 -4.5512 -0.0127 42 1 0.4955 -2.4947 -0.0015 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228735451.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:30 Heat of formation + Delta-G solvation = 42.522688 kcal Electronic energy + Delta-G solvation = -25674.126324 eV Core-core repulsion = 22163.214872 eV Total energy + Delta-G solvation = -3510.911451 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.131 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.68396 -39.23127 -38.09226 -35.60573 -34.43299 -33.19621 -31.41644 -30.35184 -30.21044 -29.19275 -27.68502 -27.38494 -23.72443 -23.54614 -22.56155 -21.96180 -21.02605 -20.25079 -17.99043 -17.64970 -17.21444 -16.60222 -16.06885 -15.77221 -15.01097 -14.71760 -14.43077 -14.14998 -14.07925 -13.88258 -13.57565 -13.41633 -13.06335 -12.96242 -12.86374 -12.74942 -12.67229 -12.35173 -12.17132 -12.04937 -11.42224 -11.29834 -11.06385 -10.94548 -10.78587 -10.49228 -10.14099 -9.92595 -9.83579 -9.46734 -9.21931 -8.94991 -8.35577 -8.15949 -8.04487 -7.46284 -6.44967 -4.48392 0.69362 1.19518 1.93901 1.99009 2.30772 2.95708 3.00616 3.08958 3.28849 3.85693 4.02209 4.39552 4.43173 4.66055 4.72666 4.84704 4.87654 4.97992 5.27036 5.29512 5.41173 5.43701 5.46234 5.49201 5.56757 5.62180 5.68247 5.77203 5.80135 5.98928 6.02922 6.10664 6.16267 6.22738 6.33609 6.42744 6.52603 6.61119 6.70628 6.73032 6.83108 6.99884 7.03458 7.08296 7.14591 7.29799 7.58022 7.95206 8.19852 8.21673 8.67725 9.12147 10.66826 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.014574 B = 0.004217 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.796931 B = 6638.522952 C = 7851.922024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.012 4.012 3 C -0.208 4.208 4 C 0.133 3.867 5 N -0.487 5.487 6 C 0.170 3.830 7 C -0.175 4.175 8 C 0.192 3.808 9 O -0.307 6.307 10 C 0.203 3.797 11 H 0.051 0.949 12 C -0.532 4.532 13 H 0.090 0.910 14 C 0.088 3.912 15 N -0.871 5.871 16 Si 0.847 3.153 17 H -0.262 1.262 18 H -0.277 1.277 19 H -0.256 1.256 20 C -0.039 4.039 21 C -0.098 4.098 22 C -0.123 4.123 23 C -0.142 4.142 24 C -0.120 4.120 25 C -0.129 4.129 26 C -0.165 4.165 27 C -0.074 4.074 28 C -0.137 4.137 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.129 0.871 33 H 0.152 0.848 34 H 0.137 0.863 35 H 0.271 0.729 36 H 0.124 0.876 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.109 0.891 41 H 0.145 0.855 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.503 9.373 -7.822 12.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.020 4.020 3 C -0.228 4.228 4 C -0.039 4.039 5 N -0.196 5.196 6 C 0.049 3.951 7 C -0.195 4.195 8 C 0.142 3.858 9 O -0.219 6.219 10 C 0.149 3.851 11 H 0.069 0.931 12 C -0.569 4.569 13 H 0.108 0.892 14 C -0.118 4.118 15 N -0.506 5.506 16 Si 0.674 3.326 17 H -0.187 1.187 18 H -0.203 1.203 19 H -0.181 1.181 20 C -0.040 4.040 21 C -0.116 4.116 22 C -0.141 4.141 23 C -0.160 4.160 24 C -0.138 4.138 25 C -0.147 4.147 26 C -0.183 4.183 27 C -0.093 4.093 28 C -0.139 4.139 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.147 0.853 33 H 0.170 0.830 34 H 0.155 0.845 35 H 0.082 0.918 36 H 0.142 0.858 37 H 0.133 0.867 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.127 0.873 41 H 0.163 0.837 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.478 9.075 -7.680 11.898 hybrid contribution -1.852 -0.484 -0.463 1.969 sum -1.373 8.591 -8.142 11.916 Atomic orbital electron populations 1.20877 0.90542 1.03242 1.03026 1.20081 0.96200 0.92296 0.93415 1.21539 0.95609 0.98276 1.07414 1.22781 0.91422 0.96228 0.93471 1.68001 1.39898 0.97647 1.14067 1.18370 0.89141 0.91615 0.95980 1.19676 1.00395 0.87837 1.11555 1.18603 0.89980 0.86693 0.90506 1.85996 1.37420 1.12848 1.85653 1.19698 0.89302 0.78507 0.97625 0.93139 1.21225 1.06366 1.37935 0.91352 0.89218 1.24900 0.97043 0.94213 0.95663 1.69858 1.22651 1.35035 1.23083 0.87368 0.81155 0.80158 0.83902 1.18682 1.20303 1.18142 1.20097 0.94181 0.96866 0.92858 1.20930 0.93316 0.98040 0.99304 1.21076 0.99418 0.95623 0.97985 1.20928 0.95411 0.99786 0.99881 1.20918 0.94131 0.98309 1.00492 1.20855 0.99330 0.96506 0.98052 1.21588 0.93825 1.00436 1.02484 1.20813 0.99679 0.90773 0.98055 1.18618 0.94106 0.93939 1.07231 0.90289 0.91017 0.90789 0.85315 0.83043 0.84483 0.91842 0.85843 0.86724 0.86934 0.86804 0.87257 0.83711 0.85287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.20 9.59 36.01 0.35 -0.85 16 2 C -0.01 -0.16 5.92 -104.28 -0.62 -0.78 16 3 C -0.21 -2.49 9.72 -39.78 -0.39 -2.88 16 4 C 0.13 1.76 11.14 -17.48 -0.19 1.56 16 5 N -0.49 -8.22 10.35 -11.00 -0.11 -8.33 16 6 C 0.17 3.10 6.60 -84.87 -0.56 2.54 16 7 C -0.17 -3.37 9.89 -39.35 -0.39 -3.76 16 8 C 0.19 3.98 6.54 -39.56 -0.26 3.72 16 9 O -0.31 -6.81 8.98 -19.21 -0.17 -6.99 16 10 C 0.20 4.65 1.57 -29.03 -0.05 4.60 16 11 H 0.05 1.14 3.34 -51.93 -0.17 0.97 16 12 C -0.53 -13.98 8.30 -34.44 -0.29 -14.27 16 13 H 0.09 2.65 8.06 -52.49 -0.42 2.22 16 14 C 0.09 2.32 5.44 -17.82 -0.10 2.22 16 15 N -0.87 -24.66 13.96 55.43 0.77 -23.88 16 16 Si 0.85 18.96 23.89 -169.99 -4.06 14.90 16 17 H -0.26 -5.73 6.83 56.52 0.39 -5.34 16 18 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 19 H -0.26 -5.28 5.47 56.52 0.31 -4.97 16 20 C -0.04 -0.84 4.97 -104.63 -0.52 -1.36 16 21 C -0.10 -1.93 9.35 -39.58 -0.37 -2.30 16 22 C -0.12 -2.08 10.05 -39.58 -0.40 -2.47 16 23 C -0.14 -2.27 10.05 -39.58 -0.40 -2.66 16 24 C -0.12 -2.06 10.05 -39.58 -0.40 -2.45 16 25 C -0.13 -2.57 9.06 -39.59 -0.36 -2.93 16 26 C -0.17 -3.29 8.60 -39.77 -0.34 -3.63 16 27 C -0.07 -1.27 9.30 -39.53 -0.37 -1.64 16 28 C -0.14 -2.29 5.74 -106.77 -0.61 -2.90 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 31 H 0.07 0.72 6.51 -51.93 -0.34 0.38 16 32 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 33 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 34 H 0.14 2.52 8.06 -52.49 -0.42 2.10 16 35 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 36 H 0.12 2.42 7.69 -52.49 -0.40 2.02 16 37 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 38 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 39 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 40 H 0.11 2.13 5.61 -52.48 -0.29 1.84 16 41 H 0.15 3.06 3.67 -52.49 -0.19 2.87 16 42 H 0.13 1.82 6.44 -52.48 -0.34 1.48 16 LS Contribution 342.69 15.07 5.16 5.16 Total: -1.00 -29.78 342.69 -9.45 -39.23 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -4.79 Total: 10.15 kcal Atomic # 6 Polarization: -23.99 SS G_CDS: -6.25 Total: -30.25 kcal Atomic # 7 Polarization: -32.87 SS G_CDS: 0.66 Total: -32.21 kcal Atomic # 8 Polarization: -6.81 SS G_CDS: -0.17 Total: -6.99 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -4.06 Total: 14.90 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.78 -9.45 -39.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228735451.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.755 kcal (2) G-P(sol) polarization free energy of solvation -29.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds