Wall clock time and date at job start Tue Mar 31 2020 12:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36669 * 120.91202 * 2 1 4 4 C 1.39226 * 119.94686 * 180.02562 * 3 2 1 5 5 N 1.31151 * 121.74455 * 0.02562 * 4 3 2 6 6 C 1.33699 * 121.31470 * 359.96037 * 5 4 3 7 7 C 1.40447 * 121.03721 * 180.02562 * 6 5 4 8 8 C 1.36591 * 119.71674 * 180.02562 * 7 6 5 9 9 O 1.35832 * 119.52375 * 179.97438 * 8 7 6 10 10 C 1.42898 * 117.00252 * 185.30829 * 9 8 7 11 11 H 1.09000 * 109.47184 * 35.44443 * 10 9 8 12 12 C 1.50710 * 109.46777 * 275.44983 * 10 9 8 13 13 H 1.07996 * 119.99758 * 328.41204 * 12 10 9 14 14 C 1.37870 * 119.99823 * 148.40658 * 12 10 9 15 15 N 1.31516 * 120.00084 * 174.65160 * 14 12 10 16 16 Si 1.86803 * 120.00380 * 354.65250 * 14 12 10 17 17 H 1.48499 * 109.46875 * 91.80806 * 16 14 12 18 18 H 1.48496 * 109.47545 * 211.81138 * 16 14 12 19 19 H 1.48501 * 109.46974 * 331.80999 * 16 14 12 20 20 C 1.50697 * 109.47409 * 155.45091 * 10 9 8 21 21 C 1.38235 * 119.99882 * 37.16571 * 20 10 9 22 22 C 1.38235 * 119.99724 * 179.79299 * 21 20 10 23 23 C 1.38234 * 120.00371 * 0.43203 * 22 21 20 24 24 C 1.38238 * 119.99603 * 359.81760 * 23 22 21 25 25 C 1.38230 * 120.00028 * 359.97438 * 24 23 22 26 26 C 1.39884 * 120.95184 * 0.27403 * 8 7 6 27 27 C 1.35992 * 120.80588 * 359.45850 * 26 8 7 28 28 C 1.40513 * 119.68908 * 0.51414 * 27 26 8 29 29 H 1.09006 * 109.46940 * 269.97920 * 1 2 3 30 30 H 1.09002 * 109.47281 * 29.97411 * 1 2 3 31 31 H 1.08996 * 109.47611 * 149.97717 * 1 2 3 32 32 H 1.07999 * 120.02833 * 0.02562 * 3 2 1 33 33 H 1.07999 * 119.12931 * 179.97438 * 4 3 2 34 34 H 1.07996 * 120.14372 * 0.04236 * 7 6 5 35 35 H 0.97003 * 120.00404 * 179.97438 * 15 14 12 36 36 H 1.07993 * 120.00150 * 359.97438 * 21 20 10 37 37 H 1.07998 * 120.00001 * 180.27221 * 22 21 20 38 38 H 1.07998 * 120.00701 * 179.83972 * 23 22 21 39 39 H 1.08003 * 120.00145 * 179.97438 * 24 23 22 40 40 H 1.08007 * 120.00353 * 180.02562 * 25 24 23 41 41 H 1.07993 * 119.59347 * 179.70072 * 26 8 7 42 42 H 1.08007 * 120.15851 * 180.28160 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1726 0.0000 4 6 3.6012 1.1491 -0.0005 5 7 4.2723 0.0223 -0.0016 6 6 3.6466 -1.1592 -0.0013 7 6 4.3711 -2.3623 -0.0019 8 6 3.7042 -3.5544 -0.0022 9 8 4.4088 -4.7156 -0.0032 10 6 3.6615 -5.9279 -0.1213 11 1 2.8078 -5.7658 -0.7792 12 6 3.1733 -6.3515 1.2402 13 1 3.7593 -6.1250 2.1185 14 6 1.9785 -7.0282 1.3642 15 7 1.6030 -7.4901 2.5369 16 14 0.8929 -7.2890 -0.1335 17 1 1.2320 -8.5868 -0.7706 18 1 -0.5322 -7.2998 0.2839 19 1 1.1159 -6.1876 -1.1044 20 6 4.5420 -7.0067 -0.6973 21 6 5.8755 -7.0750 -0.3394 22 6 6.6821 -8.0672 -0.8645 23 6 6.1574 -8.9858 -1.7543 24 6 4.8252 -8.9144 -2.1161 25 6 4.0175 -7.9248 -1.5878 26 6 2.3060 -3.5965 -0.0076 27 6 1.5746 -2.4500 -0.0018 28 6 2.2295 -1.2068 -0.0011 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3634 -0.8897 -0.5142 32 1 1.6845 2.1166 0.0004 33 1 4.1427 2.0835 -0.0010 34 1 5.4509 -2.3451 -0.0018 35 1 0.7621 -7.9658 2.6243 36 1 6.2864 -6.3549 0.3527 37 1 7.7228 -8.1233 -0.5815 38 1 6.7882 -9.7595 -2.1665 39 1 4.4153 -9.6318 -2.8117 40 1 2.9765 -7.8692 -1.8701 41 1 1.8012 -4.5512 -0.0127 42 1 0.4955 -2.4947 -0.0015 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228735451.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:29 Heat of formation + Delta-G solvation = 25.685407 kcal Electronic energy + Delta-G solvation = -25674.856443 eV Core-core repulsion = 22163.214872 eV Total energy + Delta-G solvation = -3511.641571 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.131 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.97969 -40.72109 -39.51363 -36.99501 -35.59678 -35.05558 -33.04971 -31.75981 -31.50770 -30.52478 -29.17534 -28.61240 -25.34468 -24.86488 -23.99796 -23.36287 -22.33831 -21.65534 -19.50876 -19.45487 -18.63460 -17.99827 -17.42438 -17.06383 -16.62518 -16.18963 -15.79943 -15.57311 -15.35772 -15.20419 -15.02716 -14.90746 -14.67356 -14.31529 -14.22782 -13.97447 -13.83341 -13.60117 -13.47996 -13.22583 -13.03585 -12.74075 -12.50566 -12.37194 -12.21919 -11.94897 -11.86314 -11.55332 -11.42948 -10.94620 -10.78844 -10.39349 -9.77585 -9.54485 -9.50102 -8.88805 -8.48835 -6.57766 -0.54119 -0.07482 0.50590 0.56062 1.02433 1.17784 1.20474 1.28572 1.98934 2.13149 2.32533 2.81276 3.03472 3.13687 3.51096 3.57546 3.80810 3.85138 3.95729 4.02633 4.07144 4.12001 4.21737 4.28449 4.29565 4.42797 4.53823 4.59792 4.69743 4.74778 4.78925 4.79396 4.94315 5.00578 5.06652 5.11199 5.18981 5.19917 5.22599 5.35430 5.44340 5.51896 5.60636 5.64935 5.78145 5.86035 6.01003 6.17621 6.40616 6.61232 7.02485 7.08622 8.67664 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.014574 B = 0.004217 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.796931 B = 6638.522952 C = 7851.922024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.015 4.015 3 C -0.194 4.194 4 C 0.140 3.860 5 N -0.522 5.522 6 C 0.151 3.849 7 C -0.184 4.184 8 C 0.161 3.839 9 O -0.324 6.324 10 C 0.214 3.786 11 H 0.053 0.947 12 C -0.534 4.534 13 H 0.034 0.966 14 C 0.040 3.960 15 N -0.924 5.924 16 Si 0.905 3.095 17 H -0.248 1.248 18 H -0.270 1.270 19 H -0.235 1.235 20 C -0.073 4.073 21 C -0.122 4.122 22 C -0.120 4.120 23 C -0.130 4.130 24 C -0.118 4.118 25 C -0.149 4.149 26 C -0.199 4.199 27 C -0.057 4.057 28 C -0.154 4.154 29 H 0.089 0.911 30 H 0.102 0.898 31 H 0.074 0.926 32 H 0.177 0.823 33 H 0.193 0.807 34 H 0.131 0.869 35 H 0.274 0.726 36 H 0.106 0.894 37 H 0.146 0.854 38 H 0.157 0.843 39 H 0.151 0.849 40 H 0.110 0.890 41 H 0.128 0.872 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.685 11.025 -10.464 15.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.023 4.023 3 C -0.213 4.213 4 C -0.032 4.032 5 N -0.233 5.233 6 C 0.031 3.969 7 C -0.204 4.204 8 C 0.113 3.887 9 O -0.237 6.237 10 C 0.160 3.840 11 H 0.071 0.929 12 C -0.571 4.571 13 H 0.052 0.948 14 C -0.162 4.162 15 N -0.562 5.562 16 Si 0.727 3.273 17 H -0.172 1.172 18 H -0.196 1.196 19 H -0.159 1.159 20 C -0.074 4.074 21 C -0.140 4.140 22 C -0.138 4.138 23 C -0.148 4.148 24 C -0.136 4.136 25 C -0.167 4.167 26 C -0.218 4.218 27 C -0.076 4.076 28 C -0.156 4.156 29 H 0.108 0.892 30 H 0.120 0.880 31 H 0.093 0.907 32 H 0.194 0.806 33 H 0.209 0.791 34 H 0.149 0.851 35 H 0.084 0.916 36 H 0.124 0.876 37 H 0.164 0.836 38 H 0.175 0.825 39 H 0.168 0.832 40 H 0.128 0.872 41 H 0.146 0.854 42 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -0.689 10.748 -10.334 14.926 hybrid contribution -1.361 -0.692 0.394 1.577 sum -2.050 10.056 -9.940 14.287 Atomic orbital electron populations 1.20997 0.87651 1.04860 1.04134 1.20550 0.98257 0.91253 0.92201 1.22072 0.95114 0.99684 1.04467 1.23626 0.92758 0.96382 0.90401 1.68025 1.40961 0.98132 1.16152 1.18471 0.90104 0.91739 0.96609 1.19760 1.00273 0.88401 1.12001 1.18865 0.90801 0.86446 0.92617 1.85947 1.37843 1.13328 1.86604 1.19470 0.89999 0.79113 0.95457 0.92947 1.21200 1.06244 1.38023 0.91627 0.94782 1.25656 0.98168 0.93571 0.98763 1.70005 1.23554 1.36898 1.25709 0.86447 0.79031 0.81247 0.80559 1.17228 1.19560 1.15929 1.20130 0.94968 0.97272 0.95022 1.20991 0.93543 0.99371 1.00142 1.21445 1.00549 0.94466 0.97339 1.21451 0.95474 0.99643 0.98219 1.21376 0.94395 0.97660 1.00135 1.21046 0.99962 0.97237 0.98462 1.21489 0.93500 1.00850 1.05922 1.21152 1.00994 0.90058 0.95360 1.18883 0.93761 0.95296 1.07644 0.89223 0.87982 0.90704 0.80609 0.79051 0.85145 0.91649 0.87561 0.83627 0.82508 0.83172 0.87221 0.85444 0.82219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.87 9.59 71.24 0.68 -1.18 16 2 C -0.01 -0.35 5.92 -19.64 -0.12 -0.46 16 3 C -0.19 -3.75 9.72 22.14 0.22 -3.53 16 4 C 0.14 3.23 11.14 85.03 0.95 4.18 16 5 N -0.52 -17.34 10.35 -188.70 -1.95 -19.29 16 6 C 0.15 5.65 6.60 40.27 0.27 5.91 16 7 C -0.18 -7.71 9.89 22.42 0.22 -7.49 16 8 C 0.16 7.29 6.54 22.28 0.15 7.43 16 9 O -0.32 -15.90 8.98 -91.66 -0.82 -16.73 16 10 C 0.21 10.56 1.57 29.10 0.05 10.61 16 11 H 0.05 2.52 3.34 -2.39 -0.01 2.51 16 12 C -0.53 -30.58 8.30 25.60 0.21 -30.37 16 13 H 0.03 2.25 8.06 -2.91 -0.02 2.23 16 14 C 0.04 2.22 5.44 84.65 0.46 2.68 16 15 N -0.92 -55.58 13.96 21.44 0.30 -55.28 16 16 Si 0.90 40.22 23.89 68.60 1.64 41.86 16 17 H -0.25 -10.41 6.83 99.48 0.68 -9.73 16 18 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 19 H -0.24 -9.55 5.47 99.48 0.54 -9.00 16 20 C -0.07 -3.30 4.97 -19.87 -0.10 -3.40 16 21 C -0.12 -5.08 9.35 22.27 0.21 -4.88 16 22 C -0.12 -3.93 10.05 22.27 0.22 -3.70 16 23 C -0.13 -3.74 10.05 22.27 0.22 -3.52 16 24 C -0.12 -3.72 10.05 22.27 0.22 -3.50 16 25 C -0.15 -5.89 9.06 22.27 0.20 -5.69 16 26 C -0.20 -8.42 8.60 22.15 0.19 -8.23 16 27 C -0.06 -1.96 9.30 22.30 0.21 -1.76 16 28 C -0.15 -5.05 5.74 -21.26 -0.12 -5.17 16 29 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 30 H 0.10 1.01 8.10 -2.39 -0.02 0.99 16 31 H 0.07 1.17 6.51 -2.39 -0.02 1.16 16 32 H 0.18 1.80 8.06 -2.91 -0.02 1.78 16 33 H 0.19 2.76 8.06 -2.91 -0.02 2.73 16 34 H 0.13 5.35 8.06 -2.91 -0.02 5.32 16 35 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 36 H 0.11 4.62 7.69 -2.91 -0.02 4.60 16 37 H 0.15 3.75 8.06 -2.91 -0.02 3.73 16 38 H 0.16 3.16 8.06 -2.91 -0.02 3.14 16 39 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 40 H 0.11 4.22 5.61 -2.91 -0.02 4.20 16 41 H 0.13 5.73 3.67 -2.91 -0.01 5.72 16 42 H 0.16 4.28 6.44 -2.91 -0.02 4.26 16 Total: -1.00 -73.87 342.69 4.37 -69.50 By element: Atomic # 1 Polarization: 31.15 SS G_CDS: 0.87 Total: 32.02 kcal Atomic # 6 Polarization: -56.42 SS G_CDS: 4.34 Total: -52.08 kcal Atomic # 7 Polarization: -72.92 SS G_CDS: -1.65 Total: -74.58 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: -0.82 Total: -16.73 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 1.64 Total: 41.86 kcal Total: -73.87 4.37 -69.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228735451.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.185 kcal (2) G-P(sol) polarization free energy of solvation -73.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds