Wall clock time and date at job start Tue Mar 31 2020 13:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46806 * 2 1 4 4 C 1.53003 * 109.47045 * 179.97438 * 3 2 1 5 5 N 1.46897 * 109.47182 * 177.43742 * 4 3 2 6 6 C 1.46907 * 110.99931 * 58.67089 * 5 4 3 7 7 C 1.50704 * 109.46934 * 66.04364 * 6 5 4 8 8 H 1.08001 * 120.00236 * 0.02562 * 7 6 5 9 9 C 1.37876 * 119.99792 * 180.02562 * 7 6 5 10 10 N 1.31509 * 119.99906 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99934 * 180.02562 * 9 7 6 12 12 H 1.48509 * 109.47136 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47216 * 119.99996 * 11 9 7 14 14 H 1.48500 * 109.46972 * 239.99988 * 11 9 7 15 15 C 1.46899 * 111.00290 * 294.71755 * 5 4 3 16 16 C 1.50701 * 109.46869 * 290.97601 * 15 5 4 17 17 C 1.38259 * 119.97074 * 103.52409 * 16 15 5 18 18 C 1.38383 * 120.06393 * 179.97438 * 17 16 15 19 19 F 1.35092 * 120.00093 * 180.02562 * 18 17 16 20 20 C 1.38641 * 119.99707 * 0.02562 * 18 17 16 21 21 F 1.35099 * 120.02688 * 180.02562 * 20 18 17 22 22 C 1.38526 * 119.94093 * 0.02562 * 20 18 17 23 23 F 1.35101 * 120.03249 * 179.72265 * 22 20 18 24 24 C 1.38386 * 119.96638 * 283.52156 * 16 15 5 25 25 F 1.35103 * 119.99935 * 0.02562 * 24 16 15 26 26 H 1.09006 * 109.47013 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47257 * 299.99892 * 1 2 3 28 28 H 1.08998 * 109.47586 * 60.00043 * 1 2 3 29 29 H 1.08998 * 109.47257 * 240.00108 * 2 1 3 30 30 H 1.09000 * 109.47154 * 119.99668 * 2 1 3 31 31 H 1.08998 * 109.47124 * 60.00027 * 3 2 1 32 32 H 1.09000 * 109.46993 * 299.99766 * 3 2 1 33 33 H 1.08998 * 109.47047 * 57.44012 * 4 3 2 34 34 H 1.09003 * 109.47299 * 297.43946 * 4 3 2 35 35 H 1.09001 * 109.46966 * 186.04374 * 6 5 4 36 36 H 1.09000 * 109.47102 * 306.04798 * 6 5 4 37 37 H 0.97005 * 120.00011 * 180.02562 * 10 9 7 38 38 H 1.08996 * 109.46942 * 170.97162 * 15 5 4 39 39 H 1.09005 * 109.47073 * 50.97213 * 15 5 4 40 40 H 1.08004 * 119.96924 * 359.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0596 2.8262 -0.0613 6 6 3.5622 3.6121 1.0759 7 6 4.1566 3.0781 2.3537 8 1 4.8362 2.2393 2.3240 9 6 3.8328 3.6606 3.5607 10 7 3.0049 4.6817 3.5970 11 14 4.5702 2.9993 5.1445 12 1 5.4638 1.8545 4.8343 13 1 5.3516 4.0712 5.8121 14 1 3.4808 2.5461 6.0462 15 6 3.6949 3.4572 -1.3368 16 6 4.4767 2.8175 -2.4552 17 6 3.8609 1.9101 -3.2972 18 6 4.5767 1.3219 -4.3251 19 9 3.9737 0.4359 -5.1475 20 6 5.9128 1.6420 -4.5110 21 9 6.6121 1.0685 -5.5146 22 6 6.5301 2.5503 -3.6666 23 9 7.8335 2.8593 -3.8426 24 6 5.8102 3.1388 -2.6383 25 9 6.4107 4.0253 -1.8144 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6765 1.9564 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.9336 0.8895 -0.8653 34 1 3.9329 0.9692 0.9129 35 1 3.8498 4.6558 0.9497 36 1 2.4757 3.5374 1.1217 37 1 2.7774 5.0918 4.4461 38 1 3.9257 4.5216 -1.2946 39 1 2.6281 3.3235 -1.5164 40 1 2.8202 1.6601 -3.1527 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235347664.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:34 Heat of formation + Delta-G solvation = -172.751553 kcal Electronic energy + Delta-G solvation = -27443.732671 eV Core-core repulsion = 22950.860263 eV Total energy + Delta-G solvation = -4492.872408 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.125 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -51.02587 -50.58281 -49.98034 -49.50935 -40.49139 -38.67158 -35.31313 -34.64841 -32.57433 -31.36924 -29.79808 -28.87419 -26.44723 -25.05466 -24.58170 -23.47644 -22.39103 -21.00007 -19.68216 -19.50627 -18.92099 -18.31320 -18.19292 -17.64072 -17.13465 -16.94269 -16.82534 -16.43678 -16.28429 -16.01730 -15.96944 -15.68740 -15.54977 -15.50184 -15.41452 -14.72377 -14.29723 -14.15805 -13.76982 -13.43863 -13.17205 -13.09240 -13.07157 -12.93288 -12.53674 -12.49864 -12.40140 -12.21236 -11.98660 -11.85864 -11.61146 -11.23903 -11.18136 -10.56071 -10.17513 -9.86471 -8.88647 -8.16332 -6.23389 -0.63398 -0.57747 1.40286 1.42738 1.54051 1.73475 1.98036 2.42546 2.62031 2.86887 3.06802 3.14479 3.17611 3.32014 3.50750 3.93426 4.07803 4.10791 4.21700 4.31069 4.41151 4.45995 4.53178 4.61915 4.67856 4.79198 4.89302 4.93140 4.97104 5.06620 5.19747 5.28382 5.33380 5.35230 5.44307 5.54968 5.60640 5.72191 6.10706 6.37095 6.64542 6.92128 7.45259 8.94173 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.012898 B = 0.004290 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.391845 B = 6525.884320 C = 8058.777878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C -0.148 4.148 4 C 0.066 3.934 5 N -0.542 5.542 6 C 0.208 3.792 7 C -0.513 4.513 8 H 0.057 0.943 9 C 0.007 3.993 10 N -0.931 5.931 11 Si 0.956 3.044 12 H -0.267 1.267 13 H -0.283 1.283 14 H -0.279 1.279 15 C 0.085 3.915 16 C -0.051 4.051 17 C -0.079 4.079 18 C 0.100 3.900 19 F -0.113 7.113 20 C 0.057 3.943 21 F -0.116 7.116 22 C 0.053 3.947 23 F -0.119 7.119 24 C 0.103 3.897 25 F -0.120 7.120 26 H 0.064 0.936 27 H 0.037 0.963 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.049 0.951 31 H 0.039 0.961 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.055 0.945 35 H -0.001 1.001 36 H -0.010 1.010 37 H 0.262 0.738 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.415 -7.997 -16.677 18.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C -0.187 4.187 4 C -0.062 4.062 5 N -0.264 5.264 6 C 0.082 3.918 7 C -0.551 4.551 8 H 0.075 0.925 9 C -0.191 4.191 10 N -0.572 5.572 11 Si 0.782 3.218 12 H -0.191 1.191 13 H -0.209 1.209 14 H -0.205 1.205 15 C -0.042 4.042 16 C -0.053 4.053 17 C -0.098 4.098 18 C 0.080 3.920 19 F -0.091 7.091 20 C 0.035 3.965 21 F -0.095 7.095 22 C 0.031 3.969 23 F -0.098 7.098 24 C 0.082 3.918 25 F -0.098 7.098 26 H 0.083 0.917 27 H 0.056 0.944 28 H 0.081 0.919 29 H 0.097 0.903 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.073 0.927 35 H 0.018 0.982 36 H 0.007 0.993 37 H 0.071 0.929 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -0.882 -7.885 -16.561 18.364 hybrid contribution 0.166 0.239 0.973 1.015 sum -0.716 -7.646 -15.589 17.377 Atomic orbital electron populations 1.21752 0.95460 1.01919 1.01493 1.21412 0.96185 0.95523 1.02157 1.22135 0.97157 0.98064 1.01376 1.22082 0.93021 0.89534 1.01590 1.62237 1.60010 1.03150 1.01045 1.19407 0.92961 0.91790 0.87601 1.21436 1.26475 1.15584 0.91646 0.92497 1.25716 0.95715 0.95327 1.02328 1.70059 1.36279 1.24104 1.26799 0.85526 0.78306 0.78397 0.79559 1.19104 1.20856 1.20525 1.21039 0.97662 0.98332 0.87192 1.19719 0.91222 0.97156 0.97241 1.21146 1.02906 0.94324 0.91468 1.17101 0.88371 0.93642 0.92918 1.91591 1.82426 1.65042 1.70030 1.17212 0.90152 0.98713 0.90414 1.91563 1.78380 1.82554 1.56956 1.17233 0.80099 1.01138 0.98410 1.91554 1.31730 1.91726 1.94766 1.17377 0.91591 0.92989 0.89884 1.91589 1.83261 1.64982 1.69983 0.91692 0.94406 0.91914 0.90251 0.93184 0.94258 0.90975 0.90193 0.92659 0.98243 0.99286 0.92903 0.90350 0.90553 0.79052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 9.91 71.98 0.71 -2.43 16 2 C -0.11 -2.70 5.93 30.59 0.18 -2.52 16 3 C -0.15 -4.35 4.53 30.60 0.14 -4.21 16 4 C 0.07 2.15 4.98 86.30 0.43 2.58 16 5 N -0.54 -20.60 4.67 -905.34 -4.23 -24.83 16 6 C 0.21 10.15 4.45 85.56 0.38 10.53 16 7 C -0.51 -27.78 8.53 25.60 0.22 -27.56 16 8 H 0.06 3.09 7.10 -2.91 -0.02 3.07 16 9 C 0.01 0.39 5.46 84.66 0.46 0.86 16 10 N -0.93 -54.27 13.29 21.45 0.28 -53.98 16 11 Si 0.96 43.73 29.54 68.60 2.03 45.76 16 12 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 13 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 14 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 15 C 0.09 2.50 4.65 85.56 0.40 2.90 16 16 C -0.05 -1.24 4.60 -19.82 -0.09 -1.33 16 17 C -0.08 -1.40 8.87 22.31 0.20 -1.21 16 18 C 0.10 1.91 7.30 22.40 0.16 2.07 16 19 F -0.11 -2.11 17.18 44.97 0.77 -1.34 16 20 C 0.06 1.27 7.31 22.43 0.16 1.44 16 21 F -0.12 -2.75 17.10 44.97 0.77 -1.98 16 22 C 0.05 1.34 7.31 22.43 0.16 1.51 16 23 F -0.12 -3.33 17.10 44.97 0.77 -2.56 16 24 C 0.10 2.83 7.25 22.40 0.16 2.99 16 25 F -0.12 -4.03 16.64 44.97 0.75 -3.28 16 26 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 27 H 0.04 0.91 8.14 -2.39 -0.02 0.90 16 28 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.04 1.49 6.39 -2.39 -0.02 1.47 16 32 H 0.07 1.78 6.25 -2.39 -0.01 1.77 16 33 H 0.08 2.14 6.64 -2.39 -0.02 2.12 16 34 H 0.05 2.12 6.89 -2.39 -0.02 2.11 16 35 H 0.00 -0.03 7.89 -2.39 -0.02 -0.05 16 36 H -0.01 -0.54 6.02 -2.39 -0.01 -0.55 16 37 H 0.26 14.47 8.31 -92.70 -0.77 13.70 16 38 H 0.08 2.49 7.77 -2.39 -0.02 2.47 16 39 H 0.08 1.90 5.86 -2.38 -0.01 1.89 16 40 H 0.19 2.27 8.01 -2.91 -0.02 2.25 16 Total: -1.00 -61.28 345.75 5.91 -55.37 By element: Atomic # 1 Polarization: 0.13 SS G_CDS: 1.08 Total: 1.21 kcal Atomic # 6 Polarization: -18.06 SS G_CDS: 3.68 Total: -14.38 kcal Atomic # 7 Polarization: -74.86 SS G_CDS: -3.94 Total: -78.81 kcal Atomic # 9 Polarization: -12.22 SS G_CDS: 3.06 Total: -9.16 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -61.28 5.91 -55.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235347664.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.379 kcal (2) G-P(sol) polarization free energy of solvation -61.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds