Wall clock time and date at job start Tue Mar 31 2020 12:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35832 * 117.00475 * 2 1 4 4 C 1.39885 * 119.62823 * 0.23692 * 3 2 1 5 5 C 1.35936 * 120.88826 * 180.26078 * 4 3 2 6 6 C 1.40744 * 119.88498 * 359.76895 * 5 4 3 7 7 C 1.40207 * 120.98368 * 179.97438 * 6 5 4 8 8 C 1.38712 * 119.47093 * 180.02562 * 7 6 5 9 9 C 1.47674 * 119.75431 * 179.97438 * 8 7 6 10 10 N 1.32644 * 120.00156 * 315.88193 * 9 8 7 11 11 C 1.31710 * 121.71566 * 179.74649 * 10 9 8 12 12 C 1.50696 * 119.24154 * 180.27110 * 11 10 9 13 13 C 1.38903 * 121.51167 * 0.53556 * 11 10 9 14 14 C 1.36854 * 119.81363 * 359.73759 * 13 11 10 15 15 C 1.41139 * 118.40477 * 0.02562 * 14 13 11 16 16 C 1.40827 * 120.72558 * 179.97438 * 15 14 13 17 17 H 1.08004 * 119.99775 * 151.17381 * 16 15 14 18 18 C 1.40049 * 120.00146 * 331.17073 * 16 15 14 19 19 N 1.30785 * 119.99789 * 348.79497 * 18 16 15 20 20 Si 1.86803 * 119.99833 * 168.78481 * 18 16 15 21 21 H 1.48501 * 109.47092 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46817 * 120.00462 * 20 18 16 23 23 H 1.48497 * 109.46923 * 240.00103 * 20 18 16 24 24 C 1.40735 * 120.49118 * 0.02562 * 8 7 6 25 25 C 1.35644 * 120.81801 * 359.97411 * 24 8 7 26 26 C 1.40833 * 120.04492 * 0.02562 * 25 24 8 27 27 C 1.37708 * 119.63898 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47091 * 299.99807 * 1 2 3 29 29 H 1.08997 * 109.47257 * 59.99622 * 1 2 3 30 30 H 1.09000 * 109.47277 * 179.97438 * 1 2 3 31 31 H 1.07999 * 119.55514 * 0.02562 * 4 3 2 32 32 H 1.07998 * 120.05647 * 179.78713 * 5 4 3 33 33 H 1.08001 * 120.26534 * 0.03791 * 7 6 5 34 34 H 1.09005 * 109.47197 * 270.25490 * 12 11 10 35 35 H 1.08998 * 109.47231 * 30.26169 * 12 11 10 36 36 H 1.09003 * 109.47038 * 150.25858 * 12 11 10 37 37 H 1.08001 * 120.08868 * 179.71168 * 13 11 10 38 38 H 1.08000 * 120.79703 * 179.97438 * 14 13 11 39 39 H 0.97002 * 119.99708 * 180.02562 * 19 18 16 40 40 H 1.08003 * 119.59033 * 179.97438 * 24 8 7 41 41 H 1.08003 * 119.97691 * 180.02562 * 25 24 8 42 42 H 1.07999 * 120.20159 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2102 0.0000 4 6 1.2764 2.3785 0.0050 5 6 1.8668 3.6029 -0.0002 6 6 3.2706 3.7046 -0.0058 7 6 3.9037 4.9555 -0.0118 8 6 5.2893 5.0191 -0.0178 9 6 5.9626 6.3334 -0.0246 10 7 5.5277 7.2973 -0.8254 11 6 6.0996 8.4834 -0.8554 12 6 5.5557 9.5397 -1.7823 13 6 7.1959 8.7812 -0.0560 14 6 7.6993 7.8306 0.7900 15 6 7.0791 6.5631 0.8211 16 6 7.5572 5.5488 1.6730 17 1 6.8796 4.7980 2.0520 18 6 8.9113 5.5135 2.0286 19 7 9.7709 6.2783 1.4067 20 14 9.4897 4.3743 3.3915 21 1 8.3301 3.6198 3.9314 22 1 10.4905 3.4211 2.8484 23 1 10.1082 5.1762 4.4776 24 6 6.0583 3.8404 -0.0185 25 6 5.4623 2.6219 -0.0128 26 6 4.0574 2.5241 -0.0066 27 6 3.4214 1.2735 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 0.1988 2.3067 0.0093 32 1 1.2598 4.4962 0.0004 33 1 3.3172 5.8624 -0.0115 34 1 6.0551 9.4672 -2.7486 35 1 4.4842 9.3900 -1.9149 36 1 5.7346 10.5260 -1.3540 37 1 7.6499 9.7600 -0.1024 38 1 8.5513 8.0448 1.4182 39 1 10.7088 6.2535 1.6527 40 1 7.1363 3.9069 -0.0236 41 1 6.0657 1.7261 -0.0130 42 1 4.0070 0.3661 -0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239840321.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:59 Heat of formation + Delta-G solvation = 19.647217 kcal Electronic energy + Delta-G solvation = -25256.053702 eV Core-core repulsion = 21744.150296 eV Total energy + Delta-G solvation = -3511.903406 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.131 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.21907 -38.95370 -38.12377 -35.22938 -34.32529 -32.48814 -31.42239 -30.79315 -29.42251 -28.74724 -27.77205 -26.82850 -24.47475 -23.19560 -22.40433 -21.60672 -20.70270 -20.45428 -18.02535 -17.48089 -16.74725 -16.41892 -15.69747 -15.60958 -15.07821 -14.83422 -14.37203 -14.07460 -13.99169 -13.62358 -13.27335 -13.01180 -12.96867 -12.63423 -12.53267 -12.32017 -12.08549 -11.89855 -11.61490 -11.58005 -11.51108 -11.18473 -11.09564 -11.02630 -10.85474 -10.57240 -10.27241 -10.24797 -9.83366 -9.47929 -9.32268 -8.40202 -8.13536 -7.89865 -7.64654 -7.07133 -6.86644 -4.57022 0.95807 1.43556 2.38355 2.61614 2.84339 2.97066 3.03293 3.08088 3.36001 3.51432 3.77056 4.45220 4.63560 4.83161 5.01775 5.05234 5.05870 5.30689 5.33530 5.38685 5.46583 5.56537 5.69883 5.77467 5.92844 5.99869 6.07005 6.10836 6.23463 6.32320 6.36856 6.45947 6.47649 6.51237 6.69480 6.69683 6.80222 6.86973 6.95214 7.00884 7.12195 7.21728 7.39750 7.48744 7.57260 7.63052 7.80298 7.85976 8.31268 8.53106 8.59717 9.51542 9.93481 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.012281 B = 0.004061 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.363269 B = 6893.640700 C = 8865.962033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.322 6.322 3 C 0.106 3.894 4 C -0.201 4.201 5 C -0.065 4.065 6 C -0.075 4.075 7 C -0.101 4.101 8 C 0.024 3.976 9 C 0.014 3.986 10 N -0.449 5.449 11 C -0.005 4.005 12 C -0.074 4.074 13 C -0.144 4.144 14 C -0.124 4.124 15 C 0.084 3.916 16 C -0.439 4.439 17 H 0.089 0.911 18 C 0.073 3.927 19 N -0.788 5.788 20 Si 0.909 3.091 21 H -0.256 1.256 22 H -0.271 1.271 23 H -0.270 1.270 24 C -0.062 4.062 25 C -0.138 4.138 26 C -0.022 4.022 27 C -0.147 4.147 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.095 0.905 31 H 0.122 0.878 32 H 0.125 0.875 33 H 0.123 0.877 34 H 0.050 0.950 35 H 0.055 0.945 36 H 0.052 0.948 37 H 0.099 0.901 38 H 0.128 0.872 39 H 0.285 0.715 40 H 0.138 0.862 41 H 0.121 0.879 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.847 -6.107 -0.722 11.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.236 6.236 3 C 0.062 3.938 4 C -0.219 4.219 5 C -0.083 4.083 6 C -0.075 4.075 7 C -0.120 4.120 8 C 0.023 3.977 9 C -0.124 4.124 10 N -0.157 5.157 11 C -0.147 4.147 12 C -0.132 4.132 13 C -0.164 4.164 14 C -0.150 4.150 15 C 0.079 3.921 16 C -0.468 4.468 17 H 0.107 0.893 18 C -0.146 4.146 19 N -0.412 5.412 20 Si 0.733 3.267 21 H -0.179 1.179 22 H -0.196 1.196 23 H -0.195 1.195 24 C -0.081 4.081 25 C -0.156 4.156 26 C -0.022 4.022 27 C -0.166 4.166 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.113 0.887 31 H 0.140 0.860 32 H 0.143 0.857 33 H 0.141 0.859 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.117 0.883 38 H 0.146 0.854 39 H 0.096 0.904 40 H 0.155 0.845 41 H 0.139 0.861 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -10.203 -6.394 -1.268 12.107 hybrid contribution 0.977 -0.053 1.152 1.511 sum -9.226 -6.447 -0.116 11.256 Atomic orbital electron populations 1.22972 0.79088 1.03378 1.01138 1.86027 1.20832 1.27392 1.89379 1.18853 0.92100 0.83703 0.99172 1.20836 0.99517 0.92474 1.09117 1.20862 0.93663 0.96983 0.96810 1.17977 0.92856 0.93264 1.03414 1.21312 0.94112 0.95530 1.01073 1.18400 0.91795 0.91718 0.95808 1.19453 1.00705 0.92225 0.99980 1.66866 1.29362 1.00144 1.19358 1.20276 0.98059 0.93315 1.03096 1.20291 1.00226 0.95398 0.97285 1.21273 0.97366 0.99128 0.98651 1.21441 1.01285 0.92161 1.00096 1.18347 0.90347 0.92783 0.90621 1.19644 0.93664 1.10075 1.23377 0.89255 1.26003 0.96749 0.95856 0.95986 1.69751 1.04203 1.32847 1.34444 0.86204 0.79697 0.80201 0.80592 1.17918 1.19588 1.19523 1.21245 1.01365 0.90982 0.94507 1.20754 0.92576 0.97884 1.04423 1.17755 0.93560 0.91498 0.99389 1.20329 0.91121 0.97410 1.07722 0.92910 0.92919 0.88705 0.86001 0.85666 0.85945 0.93131 0.92580 0.92879 0.88286 0.85404 0.90420 0.84471 0.86063 0.85434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.80 101.05 0.99 1.25 16 2 O -0.32 -4.27 10.48 -19.21 -0.20 -4.47 16 3 C 0.11 1.57 6.67 -39.16 -0.26 1.31 16 4 C -0.20 -2.75 8.94 -39.79 -0.36 -3.10 16 5 C -0.07 -0.98 9.75 -39.46 -0.38 -1.36 16 6 C -0.07 -1.35 5.74 -106.83 -0.61 -1.96 16 7 C -0.10 -2.01 9.39 -38.67 -0.36 -2.37 16 8 C 0.02 0.52 5.25 -104.93 -0.55 -0.03 16 9 C 0.01 0.34 6.40 -82.25 -0.53 -0.19 16 10 N -0.45 -10.80 10.04 -5.46 -0.05 -10.85 16 11 C -0.01 -0.12 6.79 -82.40 -0.56 -0.68 16 12 C -0.07 -1.32 10.15 36.00 0.37 -0.95 16 13 C -0.14 -3.24 9.64 -39.84 -0.38 -3.62 16 14 C -0.12 -3.04 8.71 -38.98 -0.34 -3.38 16 15 C 0.08 2.10 5.53 -106.40 -0.59 1.51 16 16 C -0.44 -10.63 6.68 -37.92 -0.25 -10.88 16 17 H 0.09 2.14 6.50 -52.48 -0.34 1.80 16 18 C 0.07 1.68 5.26 -17.32 -0.09 1.59 16 19 N -0.79 -18.72 10.91 55.55 0.61 -18.11 16 20 Si 0.91 17.46 29.58 -169.99 -5.03 12.43 16 21 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 22 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 23 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 24 C -0.06 -1.27 7.74 -39.57 -0.31 -1.58 16 25 C -0.14 -2.47 9.73 -39.53 -0.38 -2.86 16 26 C -0.02 -0.38 5.75 -106.75 -0.61 -1.00 16 27 C -0.15 -2.33 9.72 -39.00 -0.38 -2.71 16 28 H 0.05 0.41 7.63 -51.93 -0.40 0.02 16 29 H 0.05 0.41 7.65 -51.93 -0.40 0.02 16 30 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.12 1.30 6.22 -52.49 -0.33 0.97 16 32 H 0.13 1.60 8.06 -52.49 -0.42 1.17 16 33 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.05 0.81 8.07 -51.93 -0.42 0.40 16 37 H 0.10 1.94 8.06 -52.49 -0.42 1.52 16 38 H 0.13 3.17 6.34 -52.49 -0.33 2.84 16 39 H 0.28 6.14 8.30 -40.82 -0.34 5.80 16 40 H 0.14 2.91 6.72 -52.48 -0.35 2.56 16 41 H 0.12 1.84 8.06 -52.48 -0.42 1.42 16 42 H 0.13 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 352.10 15.07 5.31 5.31 Total: -1.00 -27.68 352.10 -10.05 -37.73 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -5.08 Total: 8.99 kcal Atomic # 6 Polarization: -25.42 SS G_CDS: -5.60 Total: -31.02 kcal Atomic # 7 Polarization: -29.52 SS G_CDS: 0.55 Total: -28.96 kcal Atomic # 8 Polarization: -4.27 SS G_CDS: -0.20 Total: -4.47 kcal Atomic # 14 Polarization: 17.46 SS G_CDS: -5.03 Total: 12.43 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -27.68 -10.05 -37.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239840321.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.379 kcal (2) G-P(sol) polarization free energy of solvation -27.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds