Wall clock time and date at job start Tue Mar 31 2020 12:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35649 * 117.00042 * 2 1 4 4 C 1.39044 * 119.53967 * 180.27312 * 3 2 1 5 5 C 1.38106 * 119.24553 * 180.20486 * 4 3 2 6 6 C 1.50704 * 120.81568 * 179.80258 * 5 4 3 7 7 C 1.40037 * 118.37300 * 359.52668 * 5 4 3 8 8 C 1.48141 * 120.48518 * 180.22951 * 7 5 4 9 9 C 1.36692 * 120.34078 * 244.72097 * 8 7 5 10 10 C 1.41106 * 120.58898 * 179.84285 * 9 8 7 11 11 C 1.41223 * 119.49120 * 180.18894 * 10 9 8 12 12 H 1.08003 * 119.99723 * 333.47876 * 11 10 9 13 13 C 1.39921 * 119.99956 * 153.47076 * 11 10 9 14 14 N 1.30836 * 119.99865 * 342.93054 * 13 11 10 15 15 Si 1.86802 * 119.99706 * 162.93136 * 13 11 10 16 16 H 1.48502 * 109.46953 * 60.00178 * 15 13 11 17 17 H 1.48498 * 109.47049 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47040 * 300.00341 * 15 13 11 19 19 C 1.39971 * 121.02333 * 0.39628 * 10 9 8 20 20 C 1.39893 * 120.11424 * 359.83950 * 19 10 9 21 21 C 1.40851 * 121.13851 * 179.97438 * 20 19 10 22 22 C 1.36192 * 119.60521 * 180.02562 * 21 20 19 23 23 C 1.39242 * 120.94166 * 359.96227 * 22 21 20 24 24 C 1.36543 * 120.98196 * 0.03433 * 23 22 21 25 25 C 1.39807 * 119.73710 * 359.97438 * 24 23 22 26 26 C 1.39307 * 119.02547 * 0.24861 * 7 5 4 27 27 N 1.31791 * 120.64893 * 359.97438 * 26 7 5 28 28 H 1.09002 * 109.46954 * 60.00077 * 1 2 3 29 29 H 1.08995 * 109.47071 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47193 * 300.00747 * 1 2 3 31 31 H 1.07998 * 120.37536 * 359.97438 * 4 3 2 32 32 H 1.09005 * 109.46730 * 269.72135 * 6 5 4 33 33 H 1.08999 * 109.47407 * 149.72313 * 6 5 4 34 34 H 1.08996 * 109.46633 * 29.71516 * 6 5 4 35 35 H 1.07996 * 119.70402 * 0.02562 * 9 8 7 36 36 H 0.97002 * 119.99210 * 179.97438 * 14 13 11 37 37 H 1.08005 * 119.94676 * 179.82167 * 19 10 9 38 38 H 1.08003 * 120.19592 * 0.06868 * 21 20 19 39 39 H 1.08008 * 119.53066 * 179.97438 * 22 21 20 40 40 H 1.07994 * 119.51160 * 180.02562 * 23 22 21 41 41 H 1.07998 * 120.13659 * 180.02562 * 24 23 22 42 42 H 1.07994 * 119.66879 * 180.02562 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 3.4339 1.2702 -0.0058 5 6 4.0546 2.5040 -0.0014 6 6 5.5577 2.6119 -0.0030 7 6 3.2530 3.6522 -0.0015 8 6 3.8695 4.9992 -0.0020 9 6 3.6992 5.8370 1.0645 10 6 4.2869 7.1199 1.0709 11 6 4.0991 7.9650 2.1867 12 1 3.2207 7.8554 2.8054 13 6 5.0513 8.9441 2.4908 14 7 6.2507 8.8734 1.9728 15 14 4.6101 10.3521 3.6363 16 1 4.2191 9.8080 4.9616 17 1 5.7844 11.2469 3.7960 18 1 3.4761 11.1202 3.0625 19 6 5.0494 7.5695 -0.0133 20 6 5.2430 6.7436 -1.1257 21 6 6.0058 7.1743 -2.2287 22 6 6.1738 6.3448 -3.2956 23 6 5.6024 5.0751 -3.3123 24 6 4.8572 4.6258 -2.2600 25 6 4.6623 5.4488 -1.1468 26 6 1.8673 3.5091 -0.0006 27 7 1.3154 2.3123 -0.0002 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 4.0207 0.3636 -0.0098 32 1 5.9211 2.6387 1.0244 33 1 5.8559 3.5253 -0.5177 34 1 5.9833 1.7499 -0.5165 35 1 3.1121 5.5131 1.9111 36 1 6.9106 9.5525 2.1833 37 1 5.4889 8.5558 0.0088 38 1 6.4555 8.1563 -2.2279 39 1 6.7586 6.6764 -4.1409 40 1 5.7508 4.4361 -4.1702 41 1 4.4207 3.6383 -2.2872 42 1 1.2392 4.3877 -0.0011 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241775874.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:34 Heat of formation + Delta-G solvation = 24.316781 kcal Electronic energy + Delta-G solvation = -25690.492686 eV Core-core repulsion = 22178.791768 eV Total energy + Delta-G solvation = -3511.700919 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.131 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.53271 -38.99753 -37.73096 -35.75035 -34.11102 -33.25777 -31.76281 -29.97632 -29.56494 -28.64587 -27.05203 -26.72248 -25.35116 -23.44390 -22.00726 -21.72409 -21.22669 -20.00926 -17.74809 -17.65657 -16.94407 -16.12162 -16.09123 -15.87164 -15.07455 -14.92383 -14.39595 -14.23687 -14.09233 -13.74978 -13.19936 -13.08071 -12.76328 -12.57099 -12.52328 -12.44818 -12.15876 -11.96510 -11.86080 -11.66528 -11.39243 -11.20564 -11.04978 -10.96304 -10.80189 -10.52020 -10.16371 -9.80140 -9.69870 -9.44695 -9.25841 -9.11777 -8.66291 -8.11377 -7.55223 -6.92141 -6.76052 -4.45455 1.28938 1.42562 1.74969 2.23730 2.93989 2.99160 3.02180 3.16341 3.19725 3.80739 3.94151 4.00027 4.51136 4.73761 5.02332 5.08765 5.20863 5.28773 5.29770 5.37600 5.55874 5.58890 5.67389 5.71003 5.76993 5.85388 5.91912 5.93062 6.10315 6.21548 6.29988 6.35652 6.53427 6.63236 6.64514 6.66955 6.86630 6.95771 6.96439 7.21149 7.32792 7.34919 7.40741 7.47381 7.61925 7.83988 8.00215 8.06028 8.09109 8.45284 8.67306 8.73590 10.02121 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.012582 B = 0.004176 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.811931 B = 6703.425086 C = 8299.218693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.313 6.313 3 C 0.306 3.694 4 C -0.194 4.194 5 C 0.005 3.995 6 C -0.127 4.127 7 C -0.103 4.103 8 C -0.045 4.045 9 C -0.123 4.123 10 C 0.102 3.898 11 C -0.449 4.449 12 H 0.080 0.920 13 C 0.074 3.926 14 N -0.779 5.779 15 Si 0.909 3.091 16 H -0.265 1.265 17 H -0.277 1.277 18 H -0.262 1.262 19 C -0.202 4.202 20 C 0.002 3.998 21 C -0.136 4.136 22 C -0.119 4.119 23 C -0.189 4.189 24 C -0.079 4.079 25 C -0.117 4.117 26 C 0.147 3.853 27 N -0.544 5.544 28 H 0.056 0.944 29 H 0.091 0.909 30 H 0.057 0.943 31 H 0.137 0.863 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.066 0.934 35 H 0.102 0.898 36 H 0.284 0.716 37 H 0.121 0.879 38 H 0.109 0.891 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.704 -9.197 -3.255 10.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.221 6.221 3 C 0.128 3.872 4 C -0.214 4.214 5 C -0.003 4.003 6 C -0.183 4.183 7 C -0.105 4.105 8 C -0.046 4.046 9 C -0.142 4.142 10 C 0.099 3.901 11 C -0.478 4.478 12 H 0.098 0.902 13 C -0.145 4.145 14 N -0.402 5.402 15 Si 0.733 3.267 16 H -0.189 1.189 17 H -0.202 1.202 18 H -0.186 1.186 19 C -0.223 4.223 20 C 0.002 3.998 21 C -0.154 4.154 22 C -0.137 4.137 23 C -0.208 4.208 24 C -0.097 4.097 25 C -0.118 4.118 26 C -0.008 4.008 27 N -0.267 5.267 28 H 0.075 0.925 29 H 0.109 0.891 30 H 0.075 0.925 31 H 0.155 0.845 32 H 0.096 0.904 33 H 0.113 0.887 34 H 0.085 0.915 35 H 0.120 0.880 36 H 0.095 0.905 37 H 0.139 0.861 38 H 0.127 0.873 39 H 0.119 0.881 40 H 0.117 0.883 41 H 0.120 0.880 42 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -4.274 -9.441 -3.223 10.853 hybrid contribution 0.530 0.805 0.580 1.125 sum -3.744 -8.636 -2.643 9.777 Atomic orbital electron populations 1.22780 0.77735 1.02387 1.02410 1.86187 1.22529 1.25009 1.88360 1.19780 0.89228 0.84562 0.93617 1.20792 0.91705 0.98737 1.10195 1.20244 0.96926 0.90916 0.92181 1.21057 0.89597 1.04358 1.03333 1.19644 0.93602 0.93660 1.03622 1.18869 0.99761 0.91014 0.94967 1.21146 1.02364 0.94166 0.96497 1.17366 0.90444 0.89814 0.92462 1.19627 1.05704 1.12834 1.09594 0.90187 1.25909 0.94004 0.98339 0.96296 1.69821 1.02777 1.31419 1.36222 0.86347 0.79239 0.80519 0.80623 1.18922 1.20190 1.18649 1.21174 1.08744 1.00059 0.92282 1.17911 0.94892 0.92768 0.94277 1.20920 1.00908 0.99358 0.94254 1.20492 1.00611 0.94638 0.97930 1.20341 1.04264 0.97018 0.99138 1.20634 0.97754 0.97953 0.93354 1.18419 1.03721 0.95113 0.94544 1.22569 0.92035 0.93189 0.92983 1.67222 1.40675 0.98719 1.20071 0.92483 0.89073 0.92457 0.84538 0.90439 0.88718 0.91515 0.88011 0.90509 0.86105 0.87300 0.88139 0.88265 0.88028 0.82247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.38 101.05 1.05 1.50 16 2 O -0.31 -4.39 10.47 -18.65 -0.20 -4.59 16 3 C 0.31 4.80 7.49 -17.05 -0.13 4.67 16 4 C -0.19 -2.89 9.73 -39.33 -0.38 -3.27 16 5 C 0.00 0.08 5.00 -103.99 -0.52 -0.44 16 6 C -0.13 -1.91 9.30 36.01 0.33 -1.57 16 7 C -0.10 -1.82 4.55 -104.76 -0.48 -2.30 16 8 C -0.05 -0.92 4.77 -103.14 -0.49 -1.41 16 9 C -0.12 -2.70 9.32 -39.05 -0.36 -3.07 16 10 C 0.10 2.49 5.54 -107.03 -0.59 1.89 16 11 C -0.45 -10.98 8.99 -37.82 -0.34 -11.32 16 12 H 0.08 1.86 7.90 -52.48 -0.41 1.44 16 13 C 0.07 1.74 5.10 -17.35 -0.09 1.65 16 14 N -0.78 -18.97 11.00 55.55 0.61 -18.36 16 15 Si 0.91 17.58 29.59 -169.99 -5.03 12.55 16 16 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 17 H -0.28 -5.26 7.11 56.52 0.40 -4.85 16 18 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 19 C -0.20 -4.97 8.38 -38.31 -0.32 -5.29 16 20 C 0.00 0.04 5.74 -106.88 -0.61 -0.57 16 21 C -0.14 -2.78 9.78 -39.33 -0.38 -3.16 16 22 C -0.12 -2.16 9.95 -39.94 -0.40 -2.56 16 23 C -0.19 -3.38 9.96 -39.82 -0.40 -3.78 16 24 C -0.08 -1.49 7.55 -39.61 -0.30 -1.79 16 25 C -0.12 -2.47 4.89 -104.65 -0.51 -2.98 16 26 C 0.15 2.46 10.89 -17.17 -0.19 2.28 16 27 N -0.54 -8.87 9.18 -13.01 -0.12 -8.99 16 28 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 29 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 31 H 0.14 1.72 8.06 -52.49 -0.42 1.30 16 32 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.09 1.64 4.51 -51.93 -0.23 1.40 16 34 H 0.07 0.83 8.10 -51.93 -0.42 0.40 16 35 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 36 H 0.28 6.32 8.30 -40.82 -0.34 5.99 16 37 H 0.12 3.10 6.19 -52.48 -0.32 2.77 16 38 H 0.11 2.09 8.06 -52.48 -0.42 1.67 16 39 H 0.10 1.55 8.06 -52.48 -0.42 1.13 16 40 H 0.10 1.53 8.06 -52.49 -0.42 1.10 16 41 H 0.10 1.80 6.37 -52.49 -0.33 1.47 16 42 H 0.16 2.47 8.06 -52.49 -0.42 2.04 16 LS Contribution 351.09 15.07 5.29 5.29 Total: -1.00 -26.38 351.09 -9.64 -36.02 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -5.09 Total: 9.60 kcal Atomic # 6 Polarization: -26.41 SS G_CDS: -5.11 Total: -31.52 kcal Atomic # 7 Polarization: -27.84 SS G_CDS: 0.49 Total: -27.35 kcal Atomic # 8 Polarization: -4.39 SS G_CDS: -0.20 Total: -4.59 kcal Atomic # 14 Polarization: 17.58 SS G_CDS: -5.03 Total: 12.55 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -26.38 -9.64 -36.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241775874.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.340 kcal (2) G-P(sol) polarization free energy of solvation -26.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds