Wall clock time and date at job start Tue Mar 31 2020 12:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35801 * 116.99974 * 2 1 4 4 C 1.36283 * 119.64434 * 0.24514 * 3 2 1 5 5 C 1.40569 * 119.98982 * 180.27617 * 4 3 2 6 6 C 1.40523 * 120.98689 * 179.70862 * 5 4 3 7 7 C 1.36145 * 119.72486 * 180.02562 * 6 5 4 8 8 C 1.39374 * 121.02105 * 359.97438 * 7 6 5 9 9 C 1.36096 * 120.96289 * 0.04278 * 8 7 6 10 10 C 1.40695 * 119.67389 * 359.95369 * 9 8 7 11 11 C 1.40220 * 121.05590 * 180.02562 * 10 9 8 12 12 C 1.38564 * 119.52463 * 180.02562 * 11 10 9 13 13 C 1.47773 * 119.78815 * 179.97438 * 12 11 10 14 14 C 1.39999 * 119.45324 * 0.02562 * 13 12 11 15 15 C 1.36549 * 119.46162 * 180.02562 * 14 13 12 16 16 C 1.41329 * 118.42464 * 359.97438 * 15 14 13 17 17 C 1.41004 * 120.55188 * 179.72424 * 16 15 14 18 18 H 1.08005 * 119.99913 * 149.97228 * 17 16 15 19 19 C 1.40014 * 119.99914 * 329.98063 * 17 16 15 20 20 N 1.30801 * 120.00166 * 162.12107 * 19 17 16 21 21 Si 1.86805 * 119.99799 * 342.11398 * 19 17 16 22 22 H 1.48500 * 109.46829 * 95.38611 * 21 19 17 23 23 H 1.48504 * 109.46807 * 215.38426 * 21 19 17 24 24 H 1.48502 * 109.47152 * 335.38368 * 21 19 17 25 25 C 1.40981 * 118.90519 * 0.02562 * 16 15 14 26 26 C 1.50695 * 119.79598 * 179.97438 * 25 16 15 27 27 N 1.31243 * 120.40499 * 359.97438 * 25 16 15 28 28 H 1.09001 * 109.47314 * 60.00092 * 1 2 3 29 29 H 1.08997 * 109.47082 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47338 * 300.00233 * 1 2 3 31 31 H 1.08004 * 120.00439 * 0.02562 * 4 3 2 32 32 H 1.07995 * 120.13420 * 0.02562 * 6 5 4 33 33 H 1.08001 * 119.48760 * 180.02562 * 7 6 5 34 34 H 1.07995 * 119.51925 * 180.02562 * 8 7 6 35 35 H 1.08001 * 120.16211 * 180.02562 * 9 8 7 36 36 H 1.08003 * 120.23696 * 0.04438 * 11 10 9 37 37 H 1.08002 * 120.26823 * 359.97438 * 14 13 12 38 38 H 1.07997 * 120.78679 * 180.02562 * 15 14 13 39 39 H 0.96994 * 119.99919 * 179.97438 * 20 19 17 40 40 H 1.09007 * 109.47156 * 90.00163 * 26 25 16 41 41 H 1.09006 * 109.47193 * 209.99474 * 26 25 16 42 42 H 1.09000 * 109.47302 * 330.00018 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2100 0.0000 4 6 1.2962 2.3483 0.0051 5 6 1.9268 3.6046 -0.0008 6 6 1.1746 4.7916 -0.0018 7 6 1.8120 5.9947 -0.0081 8 6 3.2037 6.0702 -0.0129 9 6 3.9661 4.9428 -0.0124 10 6 3.3437 3.6810 -0.0059 11 6 4.1009 2.5009 -0.0047 12 6 3.4549 1.2751 0.0012 13 6 4.2472 0.0277 0.0019 14 6 5.6453 0.1002 -0.0028 15 6 6.3776 -1.0523 -0.0026 16 6 5.6894 -2.2867 0.0029 17 6 6.4008 -3.5040 -0.0025 18 1 5.9778 -4.3788 0.4690 19 6 7.6557 -3.5787 -0.6190 20 7 8.4648 -4.5673 -0.3378 21 14 8.1745 -2.2666 -1.8432 22 1 8.9809 -1.2317 -1.1476 23 1 8.9880 -2.8875 -2.9193 24 1 6.9669 -1.6375 -2.4360 25 6 4.2796 -2.2808 0.0075 26 6 3.5253 -3.5854 0.0128 27 7 3.6201 -1.1461 0.0071 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 0.2180 2.2852 0.0095 32 1 0.0955 4.7497 0.0023 33 1 1.2302 6.9046 -0.0084 34 1 3.6841 7.0374 -0.0174 35 1 5.0436 5.0164 -0.0157 36 1 5.1800 2.5471 -0.0080 37 1 6.1407 1.0600 -0.0073 38 1 7.4572 -1.0213 -0.0058 39 1 9.3339 -4.6192 -0.7652 40 1 3.3468 -3.8976 1.0418 41 1 2.5712 -3.4556 -0.4982 42 1 4.1123 -4.3465 -0.5012 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245414948.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:50 Heat of formation + Delta-G solvation = 17.695139 kcal Electronic energy + Delta-G solvation = -25595.913190 eV Core-core repulsion = 22083.925135 eV Total energy + Delta-G solvation = -3511.988055 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.131 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.60186 -40.40852 -39.55039 -36.76585 -35.78595 -34.01599 -33.37432 -33.08609 -30.87620 -29.81846 -28.91491 -28.09287 -26.69008 -24.37063 -23.77466 -23.18482 -22.61090 -21.67156 -19.52336 -19.12673 -18.34417 -17.83529 -17.22058 -16.73390 -16.51398 -16.16430 -15.82575 -15.68148 -15.30372 -15.12492 -15.02913 -14.68599 -14.32032 -14.17479 -13.96668 -13.87352 -13.66222 -13.39412 -13.17995 -13.03883 -12.82288 -12.61302 -12.51071 -12.47023 -12.16265 -11.92464 -11.71200 -11.62380 -11.46541 -11.26891 -10.74851 -10.28352 -9.86780 -9.80768 -9.03108 -8.77033 -8.59418 -6.50888 -0.50455 0.05985 0.64365 0.84449 1.17208 1.23929 1.35298 1.43499 2.03775 2.10255 2.56471 2.64655 3.22407 3.55009 3.56246 3.72490 3.93499 4.09283 4.16242 4.19296 4.28289 4.33472 4.39674 4.44023 4.46597 4.53170 4.60212 4.64450 4.75781 4.83005 4.88674 4.96284 4.99386 5.02771 5.08282 5.10822 5.17686 5.31942 5.40014 5.48642 5.60324 5.67840 5.71120 5.77890 5.86442 5.91030 6.14379 6.19118 6.51820 6.63982 6.69377 7.65664 8.01804 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.017213 B = 0.003839 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.249645 B = 7291.757644 C = 8705.237037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.299 6.299 3 C 0.136 3.864 4 C -0.222 4.222 5 C -0.038 4.038 6 C -0.126 4.126 7 C -0.111 4.111 8 C -0.132 4.132 9 C -0.107 4.107 10 C -0.091 4.091 11 C -0.090 4.090 12 C -0.042 4.042 13 C 0.003 3.997 14 C -0.112 4.112 15 C -0.223 4.223 16 C 0.032 3.968 17 C -0.443 4.443 18 H 0.079 0.921 19 C 0.055 3.945 20 N -0.822 5.822 21 Si 0.957 3.043 22 H -0.252 1.252 23 H -0.270 1.270 24 H -0.264 1.264 25 C 0.009 3.991 26 C -0.065 4.065 27 N -0.426 5.426 28 H 0.062 0.938 29 H 0.107 0.893 30 H 0.063 0.937 31 H 0.152 0.848 32 H 0.143 0.857 33 H 0.150 0.850 34 H 0.148 0.852 35 H 0.140 0.860 36 H 0.145 0.855 37 H 0.138 0.862 38 H 0.114 0.886 39 H 0.300 0.700 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.801 17.378 -1.059 20.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.210 6.210 3 C 0.089 3.911 4 C -0.241 4.241 5 C -0.039 4.039 6 C -0.144 4.144 7 C -0.129 4.129 8 C -0.150 4.150 9 C -0.125 4.125 10 C -0.091 4.091 11 C -0.110 4.110 12 C -0.043 4.043 13 C -0.131 4.131 14 C -0.132 4.132 15 C -0.247 4.247 16 C 0.027 3.973 17 C -0.472 4.472 18 H 0.097 0.903 19 C -0.164 4.164 20 N -0.446 5.446 21 Si 0.781 3.219 22 H -0.177 1.177 23 H -0.196 1.196 24 H -0.189 1.189 25 C -0.138 4.138 26 C -0.123 4.123 27 N -0.134 5.134 28 H 0.081 0.919 29 H 0.125 0.875 30 H 0.081 0.919 31 H 0.169 0.831 32 H 0.161 0.839 33 H 0.168 0.832 34 H 0.166 0.834 35 H 0.158 0.842 36 H 0.162 0.838 37 H 0.156 0.844 38 H 0.132 0.868 39 H 0.111 0.889 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.384 16.958 -1.054 20.452 hybrid contribution 1.347 -0.249 -0.269 1.395 sum -10.038 16.709 -1.323 19.537 Atomic orbital electron populations 1.23298 0.78259 1.04779 1.01720 1.86502 1.21569 1.25789 1.87188 1.18922 0.91383 0.85448 0.95322 1.21068 1.00554 0.90747 1.11725 1.18109 0.92633 0.93926 0.99215 1.21199 1.00435 0.91228 1.01526 1.21216 0.94963 0.98318 0.98418 1.21144 0.94223 0.99043 1.00541 1.21267 1.00838 0.90980 0.99407 1.18163 0.92993 0.94006 1.03973 1.21361 1.00182 0.89603 0.99817 1.18243 0.90242 0.92120 1.03698 1.19282 0.90129 0.90931 1.12720 1.21554 0.94184 0.98684 0.98780 1.21168 0.99046 0.92954 1.11576 1.18718 0.93592 0.93571 0.91428 1.19467 1.00346 0.96713 1.30652 0.90329 1.26795 0.94578 0.97711 0.97283 1.69667 1.08434 1.30795 1.35698 0.85597 0.79222 0.78618 0.78500 1.17696 1.19647 1.18881 1.21606 0.90582 0.93950 1.07620 1.20246 0.98626 0.92024 1.01355 1.67131 1.40535 0.97497 1.08213 0.91908 0.87489 0.91891 0.83051 0.83901 0.83222 0.83414 0.84191 0.83781 0.84409 0.86793 0.88917 0.92225 0.91560 0.91613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.35 9.80 113.37 1.11 1.46 16 2 O -0.30 -10.98 8.22 -91.32 -0.75 -11.73 16 3 C 0.14 4.94 6.66 22.51 0.15 5.09 16 4 C -0.22 -6.50 8.71 22.38 0.20 -6.30 16 5 C -0.04 -1.07 5.75 -21.25 -0.12 -1.19 16 6 C -0.13 -2.65 9.75 22.34 0.22 -2.43 16 7 C -0.11 -1.95 9.95 22.06 0.22 -1.73 16 8 C -0.13 -2.39 9.95 22.04 0.22 -2.17 16 9 C -0.11 -2.42 9.77 22.37 0.22 -2.20 16 10 C -0.09 -2.65 5.74 -21.29 -0.12 -2.77 16 11 C -0.09 -2.99 9.16 22.83 0.21 -2.78 16 12 C -0.04 -1.65 5.88 -19.98 -0.12 -1.77 16 13 C 0.00 0.12 6.73 41.90 0.28 0.40 16 14 C -0.11 -4.92 9.37 22.30 0.21 -4.71 16 15 C -0.22 -10.65 7.20 22.64 0.16 -10.48 16 16 C 0.03 1.63 5.11 -21.17 -0.11 1.52 16 17 C -0.44 -23.48 8.53 23.38 0.20 -23.28 16 18 H 0.08 4.36 7.23 -2.91 -0.02 4.34 16 19 C 0.05 2.77 5.42 85.28 0.46 3.23 16 20 N -0.82 -41.98 13.93 21.84 0.30 -41.67 16 21 Si 0.96 41.02 24.53 68.60 1.68 42.70 16 22 H -0.25 -10.08 6.71 99.48 0.67 -9.41 16 23 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 24 H -0.26 -12.15 6.85 99.48 0.68 -11.46 16 25 C 0.01 0.44 6.86 43.32 0.30 0.74 16 26 C -0.07 -2.74 9.59 71.23 0.68 -2.06 16 27 N -0.43 -20.62 7.94 -171.02 -1.36 -21.98 16 28 H 0.06 1.29 7.64 -2.39 -0.02 1.28 16 29 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.06 1.30 7.62 -2.39 -0.02 1.28 16 31 H 0.15 3.46 6.17 -2.91 -0.02 3.44 16 32 H 0.14 2.25 8.06 -2.91 -0.02 2.22 16 33 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 34 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 35 H 0.14 2.58 8.06 -2.91 -0.02 2.55 16 36 H 0.14 4.20 6.10 -2.91 -0.02 4.19 16 37 H 0.14 4.95 6.12 -2.91 -0.02 4.93 16 38 H 0.11 5.22 4.84 -2.91 -0.01 5.21 16 39 H 0.30 13.66 8.30 -92.71 -0.77 12.89 16 40 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 41 H 0.07 2.55 8.14 -2.38 -0.02 2.53 16 42 H 0.07 2.78 6.84 -2.39 -0.02 2.77 16 Total: -1.00 -64.72 342.70 5.24 -59.48 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: 0.99 Total: 24.62 kcal Atomic # 6 Polarization: -55.79 SS G_CDS: 4.37 Total: -51.43 kcal Atomic # 7 Polarization: -62.59 SS G_CDS: -1.05 Total: -63.65 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: -0.75 Total: -11.73 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 1.68 Total: 42.70 kcal Total: -64.72 5.24 -59.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245414948.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.180 kcal (2) G-P(sol) polarization free energy of solvation -64.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds