Wall clock time and date at job start Tue Mar 31 2020 13:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.46935 * 2 1 4 4 C 1.47205 * 109.47054 * 240.00412 * 2 1 3 5 5 N 2.60802 * 109.47094 * 240.00301 * 2 1 3 6 6 C 1.52995 * 109.47208 * 120.00411 * 2 1 3 7 7 N 1.46499 * 109.47030 * 299.99553 * 6 2 1 8 8 C 1.34776 * 120.00074 * 180.02562 * 7 6 2 9 9 O 1.21365 * 120.00180 * 0.02562 * 8 7 6 10 10 C 1.49341 * 120.00146 * 180.02562 * 8 7 6 11 11 O 1.21389 * 119.99744 * 359.97438 * 10 8 7 12 12 N 1.34776 * 120.00146 * 179.97438 * 10 8 7 13 13 C 1.39932 * 120.00037 * 179.97438 * 12 10 8 14 14 C 1.40466 * 125.97927 * 359.96966 * 13 12 10 15 15 C 1.35222 * 107.86479 * 179.74094 * 14 13 12 16 16 N 1.34986 * 107.87618 * 0.42340 * 15 14 13 17 17 C 1.46495 * 125.97298 * 179.83859 * 16 15 14 18 18 C 1.50702 * 109.47571 * 124.71954 * 17 16 15 19 19 H 1.08002 * 119.99446 * 359.97438 * 18 17 16 20 20 C 1.37871 * 120.00072 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99826 * 179.72119 * 20 18 17 22 22 Si 1.86800 * 120.00406 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.46758 * 269.72576 * 22 20 18 24 24 H 1.48499 * 109.47026 * 29.72423 * 22 20 18 25 25 H 1.48496 * 109.47474 * 149.72459 * 22 20 18 26 26 N 1.31275 * 125.98070 * 179.97438 * 13 12 10 27 27 H 1.09002 * 109.47312 * 299.99611 * 1 2 3 28 28 H 1.09000 * 109.47387 * 60.00041 * 1 2 3 29 29 H 1.09006 * 109.47226 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46905 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47049 * 300.00166 * 3 2 1 32 32 H 1.08997 * 109.46891 * 60.00554 * 3 2 1 33 33 H 1.09011 * 109.47042 * 180.02562 * 6 2 1 34 34 H 1.08992 * 109.47674 * 60.00129 * 6 2 1 35 35 H 0.97003 * 119.99957 * 0.02562 * 7 6 2 36 36 H 0.96995 * 120.00025 * 359.97438 * 12 10 8 37 37 H 1.07996 * 126.06883 * 0.02562 * 14 13 12 38 38 H 1.07998 * 126.06003 * 180.26767 * 15 14 13 39 39 H 1.09000 * 109.47378 * 4.71613 * 17 16 15 40 40 H 1.09001 * 109.47153 * 244.71734 * 17 16 15 41 41 H 0.96999 * 120.00128 * 180.27192 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0206 -0.6938 -1.2020 5 7 2.3993 -1.2293 -2.1295 6 6 2.0399 -0.7213 1.2491 7 7 1.5517 -0.0307 2.4453 8 6 1.8777 -0.4909 3.6694 9 8 2.5762 -1.4772 3.7808 10 6 1.3796 0.2127 4.8888 11 8 0.6813 1.1994 4.7775 12 7 1.7052 -0.2478 6.1129 13 6 1.2388 0.4119 7.2555 14 6 0.4284 1.5591 7.2731 15 6 0.1934 1.8811 8.5652 16 7 0.8358 0.9815 9.3399 17 6 0.8495 0.9615 10.8046 18 6 0.3744 -0.3826 11.2933 19 1 0.0902 -1.1454 10.5836 20 6 0.3015 -0.6379 12.6461 21 7 -0.1184 -1.8090 13.0726 22 14 0.7923 0.6818 13.8736 23 1 2.2386 0.5543 14.1856 24 1 0.5278 2.0222 13.2916 25 1 0.0009 0.5182 15.1194 26 7 1.4821 0.0669 8.4985 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6765 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1301 -0.7209 1.2493 34 1 1.6767 -1.7489 1.2492 35 1 0.9938 0.7578 2.3564 36 1 2.2628 -1.0364 6.2019 37 1 0.0552 2.0872 6.4082 38 1 -0.4007 2.7123 8.9152 39 1 0.1888 1.7407 11.1849 40 1 1.8641 1.1397 11.1610 41 1 -0.1734 -1.9874 14.0244 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320839763.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:56 Heat of formation + Delta-G solvation = 47.078336 kcal Electronic energy + Delta-G solvation = -25183.492474 eV Core-core repulsion = 21294.222058 eV Total energy + Delta-G solvation = -3889.270416 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.143 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.25673 -40.46254 -39.18917 -38.26450 -36.19311 -35.12988 -33.57804 -33.26916 -31.37708 -29.55835 -28.11799 -28.06398 -27.24780 -25.16302 -23.08484 -22.34771 -21.28590 -20.55136 -19.90598 -18.77698 -17.36349 -17.19083 -16.83021 -16.43243 -16.38599 -15.98313 -15.44866 -15.37955 -14.76683 -14.68983 -14.29007 -14.09064 -14.04853 -13.74261 -13.39873 -13.33314 -13.24938 -12.67457 -12.63332 -12.56007 -12.48312 -12.23790 -12.19416 -11.73432 -11.72566 -11.63314 -11.22475 -10.92315 -10.62696 -10.21171 -10.05827 -9.73864 -9.72136 -9.58851 -8.80138 -8.34671 -7.70266 -6.26563 -4.29659 1.07775 1.77941 2.21868 2.25074 2.52936 2.90282 2.94954 3.13796 3.18222 3.21658 3.30894 3.55689 3.71095 3.88084 4.06281 4.17492 4.19623 4.25956 4.88981 4.95793 5.00556 5.00996 5.10649 5.11128 5.21518 5.28104 5.46597 5.54325 5.56811 5.68704 5.96350 6.17610 6.27960 6.36197 6.55876 6.69561 6.98115 7.11819 7.14948 7.28479 7.50053 7.69635 7.83222 8.27537 8.41588 8.82578 9.27678 10.85984 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.037771 B = 0.002045 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.134439 B =13686.899036 C =14037.792510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.025 3.975 3 C -0.148 4.148 4 C 0.216 3.784 5 N -0.419 5.419 6 C 0.129 3.871 7 N -0.699 5.699 8 C 0.519 3.481 9 O -0.509 6.509 10 C 0.515 3.485 11 O -0.499 6.499 12 N -0.597 5.597 13 C 0.253 3.747 14 C -0.282 4.282 15 C 0.054 3.946 16 N -0.314 5.314 17 C 0.231 3.769 18 C -0.537 4.537 19 H 0.086 0.914 20 C 0.077 3.923 21 N -0.886 5.886 22 Si 0.875 3.125 23 H -0.271 1.271 24 H -0.265 1.265 25 H -0.280 1.280 26 N -0.286 5.286 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.416 0.584 36 H 0.425 0.575 37 H 0.164 0.836 38 H 0.172 0.828 39 H 0.055 0.945 40 H 0.039 0.961 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.397 9.207 -23.645 25.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.021 3.979 3 C -0.206 4.206 4 C -0.103 4.103 5 N -0.093 5.093 6 C 0.005 3.995 7 N -0.355 5.355 8 C 0.299 3.701 9 O -0.383 6.383 10 C 0.294 3.706 11 O -0.373 6.373 12 N -0.245 5.245 13 C 0.000 4.000 14 C -0.313 4.313 15 C -0.095 4.095 16 N -0.096 5.096 17 C 0.112 3.888 18 C -0.575 4.575 19 H 0.104 0.896 20 C -0.127 4.127 21 N -0.523 5.523 22 Si 0.701 3.299 23 H -0.197 1.197 24 H -0.190 1.190 25 H -0.206 1.206 26 N -0.117 5.117 27 H 0.100 0.900 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.254 0.746 36 H 0.262 0.738 37 H 0.181 0.819 38 H 0.189 0.811 39 H 0.073 0.927 40 H 0.057 0.943 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.540 7.421 -23.999 25.248 hybrid contribution -0.324 1.182 0.674 1.398 sum 2.216 8.602 -23.325 24.960 Atomic orbital electron populations 1.21989 0.90439 1.04115 1.04131 1.18416 0.97705 0.95384 0.86362 1.21987 1.02564 0.91962 1.04123 1.28638 0.93593 0.93705 0.94386 1.81274 1.08329 1.08556 1.11141 1.21412 1.00491 0.96408 0.81238 1.45577 1.53233 1.32463 1.04242 1.19857 0.81282 0.84620 0.84366 1.90829 1.35939 1.24934 1.86572 1.19820 0.81873 0.84999 0.83873 1.90710 1.35711 1.24788 1.86063 1.41982 1.49906 1.30424 1.02216 1.19012 0.99838 0.94795 0.86382 1.21532 1.10550 1.01820 0.97368 1.22585 0.99271 0.96755 0.90936 1.48711 1.35375 1.18121 1.07389 1.20110 0.98419 1.00383 0.69895 1.21093 1.45708 0.97384 0.93320 0.89587 1.24836 0.94418 0.95568 0.97925 1.69870 1.45482 1.21670 1.15261 0.86887 0.79398 0.82148 0.81478 1.19681 1.18960 1.20570 1.77482 1.21782 1.14801 0.97648 0.89959 0.90829 0.90984 0.91026 0.90837 0.89971 0.89530 0.89498 0.74591 0.73774 0.81913 0.81124 0.92725 0.94286 0.92120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.40 8.26 37.15 0.31 -0.09 16 2 C 0.03 0.09 0.70 -157.30 -0.11 -0.02 16 3 C -0.15 -0.37 8.26 37.16 0.31 -0.06 16 4 C 0.22 1.44 13.86 -20.76 -0.29 1.15 16 5 N -0.42 -4.13 18.54 42.15 0.78 -3.34 16 6 C 0.13 0.67 4.52 -4.04 -0.02 0.65 16 7 N -0.70 -4.44 4.95 -60.77 -0.30 -4.74 16 8 C 0.52 5.29 7.89 -11.64 -0.09 5.19 16 9 O -0.51 -6.42 16.48 5.48 0.09 -6.33 16 10 C 0.51 6.49 7.85 -11.64 -0.09 6.40 16 11 O -0.50 -6.68 13.60 5.46 0.07 -6.61 16 12 N -0.60 -8.90 5.43 -11.58 -0.06 -8.96 16 13 C 0.25 4.70 8.10 -154.55 -1.25 3.45 16 14 C -0.28 -4.89 9.60 -39.82 -0.38 -5.28 16 15 C 0.05 0.95 11.43 -17.24 -0.20 0.75 16 16 N -0.31 -6.73 3.67 -62.56 -0.23 -6.96 16 17 C 0.23 5.24 5.33 -5.20 -0.03 5.22 16 18 C -0.54 -14.77 9.79 -34.44 -0.34 -15.11 16 19 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 20 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 21 N -0.89 -26.14 13.96 55.43 0.77 -25.37 16 22 Si 0.87 19.67 27.47 -169.99 -4.67 15.00 16 23 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 24 H -0.26 -5.48 6.54 56.52 0.37 -5.11 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 N -0.29 -6.28 12.42 31.41 0.39 -5.89 16 27 H 0.08 0.15 6.86 -51.93 -0.36 -0.20 16 28 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.07 0.20 8.14 -51.92 -0.42 -0.22 16 31 H 0.07 0.14 8.14 -51.93 -0.42 -0.28 16 32 H 0.08 0.14 6.86 -51.93 -0.36 -0.22 16 33 H 0.09 0.48 8.14 -51.92 -0.42 0.05 16 34 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.42 1.94 5.63 -40.82 -0.23 1.71 16 36 H 0.42 5.86 8.29 -40.82 -0.34 5.53 16 37 H 0.16 2.59 5.91 -52.49 -0.31 2.28 16 38 H 0.17 2.31 8.06 -52.49 -0.42 1.89 16 39 H 0.06 1.13 7.12 -51.93 -0.37 0.76 16 40 H 0.04 0.87 7.57 -51.93 -0.39 0.48 16 41 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 359.85 15.07 5.42 5.42 Total: -1.00 -34.59 359.85 -4.91 -39.50 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -4.90 Total: 4.00 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: -2.28 Total: 4.28 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: 1.35 Total: -55.26 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: 0.16 Total: -12.93 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -4.67 Total: 15.00 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.59 -4.91 -39.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320839763.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.578 kcal (2) G-P(sol) polarization free energy of solvation -34.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds