Wall clock time and date at job start Tue Mar 31 2020 13:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.46935 * 2 1 4 4 C 1.47205 * 109.47054 * 240.00412 * 2 1 3 5 5 N 2.60802 * 109.47094 * 240.00301 * 2 1 3 6 6 C 1.52995 * 109.47208 * 120.00411 * 2 1 3 7 7 N 1.46499 * 109.47030 * 299.99553 * 6 2 1 8 8 C 1.34776 * 120.00074 * 180.02562 * 7 6 2 9 9 O 1.21365 * 120.00180 * 0.02562 * 8 7 6 10 10 C 1.49341 * 120.00146 * 180.02562 * 8 7 6 11 11 O 1.21389 * 119.99744 * 359.97438 * 10 8 7 12 12 N 1.34776 * 120.00146 * 179.97438 * 10 8 7 13 13 C 1.39932 * 120.00037 * 179.97438 * 12 10 8 14 14 C 1.40466 * 125.97927 * 359.96966 * 13 12 10 15 15 C 1.35222 * 107.86479 * 179.74094 * 14 13 12 16 16 N 1.34986 * 107.87618 * 0.42340 * 15 14 13 17 17 C 1.46495 * 125.97298 * 179.83859 * 16 15 14 18 18 C 1.50702 * 109.47571 * 124.71954 * 17 16 15 19 19 H 1.08002 * 119.99446 * 359.97438 * 18 17 16 20 20 C 1.37871 * 120.00072 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99826 * 179.72119 * 20 18 17 22 22 Si 1.86800 * 120.00406 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.46758 * 269.72576 * 22 20 18 24 24 H 1.48499 * 109.47026 * 29.72423 * 22 20 18 25 25 H 1.48496 * 109.47474 * 149.72459 * 22 20 18 26 26 N 1.31275 * 125.98070 * 179.97438 * 13 12 10 27 27 H 1.09002 * 109.47312 * 299.99611 * 1 2 3 28 28 H 1.09000 * 109.47387 * 60.00041 * 1 2 3 29 29 H 1.09006 * 109.47226 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46905 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47049 * 300.00166 * 3 2 1 32 32 H 1.08997 * 109.46891 * 60.00554 * 3 2 1 33 33 H 1.09011 * 109.47042 * 180.02562 * 6 2 1 34 34 H 1.08992 * 109.47674 * 60.00129 * 6 2 1 35 35 H 0.97003 * 119.99957 * 0.02562 * 7 6 2 36 36 H 0.96995 * 120.00025 * 359.97438 * 12 10 8 37 37 H 1.07996 * 126.06883 * 0.02562 * 14 13 12 38 38 H 1.07998 * 126.06003 * 180.26767 * 15 14 13 39 39 H 1.09000 * 109.47378 * 4.71613 * 17 16 15 40 40 H 1.09001 * 109.47153 * 244.71734 * 17 16 15 41 41 H 0.96999 * 120.00128 * 180.27192 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0206 -0.6938 -1.2020 5 7 2.3993 -1.2293 -2.1295 6 6 2.0399 -0.7213 1.2491 7 7 1.5517 -0.0307 2.4453 8 6 1.8777 -0.4909 3.6694 9 8 2.5762 -1.4772 3.7808 10 6 1.3796 0.2127 4.8888 11 8 0.6813 1.1994 4.7775 12 7 1.7052 -0.2478 6.1129 13 6 1.2388 0.4119 7.2555 14 6 0.4284 1.5591 7.2731 15 6 0.1934 1.8811 8.5652 16 7 0.8358 0.9815 9.3399 17 6 0.8495 0.9615 10.8046 18 6 0.3744 -0.3826 11.2933 19 1 0.0902 -1.1454 10.5836 20 6 0.3015 -0.6379 12.6461 21 7 -0.1184 -1.8090 13.0726 22 14 0.7923 0.6818 13.8736 23 1 2.2386 0.5543 14.1856 24 1 0.5278 2.0222 13.2916 25 1 0.0009 0.5182 15.1194 26 7 1.4821 0.0669 8.4985 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6765 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1301 -0.7209 1.2493 34 1 1.6767 -1.7489 1.2492 35 1 0.9938 0.7578 2.3564 36 1 2.2628 -1.0364 6.2019 37 1 0.0552 2.0872 6.4082 38 1 -0.4007 2.7123 8.9152 39 1 0.1888 1.7407 11.1849 40 1 1.8641 1.1397 11.1610 41 1 -0.1734 -1.9874 14.0244 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320839763.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:56 Heat of formation + Delta-G solvation = 21.259232 kcal Electronic energy + Delta-G solvation = -25184.612074 eV Core-core repulsion = 21294.222058 eV Total energy + Delta-G solvation = -3890.390016 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.143 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.42653 -41.57351 -40.01297 -39.03754 -36.92817 -36.31279 -35.22068 -34.13057 -33.10610 -31.01041 -29.32534 -28.33614 -28.27197 -26.12317 -24.40621 -23.41865 -22.38420 -21.69296 -21.11165 -19.79073 -19.09692 -18.21260 -18.01043 -17.41416 -17.25780 -16.79532 -16.70565 -16.34030 -16.00244 -15.62685 -15.44136 -14.98754 -14.82171 -14.68352 -14.49059 -14.42480 -14.14149 -13.87244 -13.85845 -13.78909 -13.07164 -13.00408 -12.83700 -12.72628 -12.58621 -12.52770 -12.17966 -12.04617 -11.99142 -11.80925 -11.68075 -11.44103 -10.85992 -10.77988 -10.39009 -9.80156 -9.16245 -8.35431 -6.46011 0.09029 0.83328 1.16920 1.38258 1.41999 1.50299 1.58587 1.68561 1.78846 1.89437 2.30321 2.31314 2.52688 2.85553 2.97460 3.30053 3.47462 3.73048 3.88052 3.91724 4.22120 4.53079 4.58325 4.59889 4.70668 4.79491 4.84841 4.86453 4.89530 4.90211 4.92346 5.00866 5.03334 5.26407 5.30700 5.35412 5.80311 5.81830 6.01465 6.15920 6.41514 6.45104 6.58908 6.60977 6.81704 6.98152 7.16973 8.81552 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.037771 B = 0.002045 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.134439 B =13686.899036 C =14037.792510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.037 3.963 3 C -0.150 4.150 4 C 0.243 3.757 5 N -0.476 5.476 6 C 0.127 3.873 7 N -0.673 5.673 8 C 0.528 3.472 9 O -0.535 6.535 10 C 0.519 3.481 11 O -0.502 6.502 12 N -0.604 5.604 13 C 0.259 3.741 14 C -0.285 4.285 15 C 0.063 3.937 16 N -0.341 5.341 17 C 0.238 3.762 18 C -0.547 4.547 19 H 0.026 0.974 20 C 0.012 3.988 21 N -0.943 5.943 22 Si 0.956 3.044 23 H -0.268 1.268 24 H -0.225 1.225 25 H -0.280 1.280 26 N -0.346 5.346 27 H 0.095 0.905 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.427 0.573 36 H 0.427 0.573 37 H 0.182 0.818 38 H 0.215 0.785 39 H 0.087 0.913 40 H 0.045 0.955 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.033 12.626 -24.237 27.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.033 3.967 3 C -0.208 4.208 4 C -0.076 4.076 5 N -0.151 5.151 6 C 0.003 3.997 7 N -0.329 5.329 8 C 0.307 3.693 9 O -0.412 6.412 10 C 0.300 3.700 11 O -0.375 6.375 12 N -0.253 5.253 13 C 0.004 3.996 14 C -0.316 4.316 15 C -0.085 4.085 16 N -0.123 5.123 17 C 0.118 3.882 18 C -0.585 4.585 19 H 0.044 0.956 20 C -0.186 4.186 21 N -0.582 5.582 22 Si 0.777 3.223 23 H -0.193 1.193 24 H -0.148 1.148 25 H -0.205 1.205 26 N -0.177 5.177 27 H 0.114 0.886 28 H 0.102 0.898 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.114 0.886 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.268 0.732 36 H 0.265 0.735 37 H 0.199 0.801 38 H 0.232 0.768 39 H 0.105 0.895 40 H 0.063 0.937 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.155 10.882 -24.678 27.057 hybrid contribution -0.264 0.064 0.656 0.710 sum 1.891 10.946 -24.022 26.466 Atomic orbital electron populations 1.22056 0.89183 1.04302 1.05323 1.18483 0.98465 0.95596 0.84169 1.22054 1.02551 0.90843 1.05330 1.29105 0.92003 0.92358 0.94109 1.81302 1.10301 1.10416 1.13112 1.21508 1.00661 0.96467 0.81082 1.45443 1.52004 1.32212 1.03254 1.19374 0.81269 0.84190 0.84465 1.90837 1.37449 1.26108 1.86757 1.20254 0.81154 0.84756 0.83812 1.90685 1.35661 1.24937 1.86174 1.42152 1.50397 1.30669 1.02085 1.19384 0.98862 0.94848 0.86472 1.21820 1.10306 1.01430 0.98035 1.23350 0.97941 0.96584 0.90576 1.48563 1.37220 1.19487 1.07052 1.19931 0.98971 0.98067 0.71207 1.21248 1.45822 0.98685 0.92775 0.95586 1.25951 0.93975 0.98393 1.00324 1.70057 1.47459 1.24706 1.15969 0.85609 0.78798 0.80053 0.77834 1.19279 1.14800 1.20528 1.77387 1.24265 1.16820 0.99241 0.88615 0.89837 0.91381 0.91229 0.89871 0.88571 0.89426 0.89635 0.73234 0.73532 0.80140 0.76818 0.89495 0.93722 0.91946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.41 8.26 71.98 0.59 0.18 16 2 C 0.04 0.19 0.70 -53.99 -0.04 0.15 16 3 C -0.15 -0.34 8.26 71.98 0.59 0.26 16 4 C 0.24 2.97 13.86 89.44 1.24 4.21 16 5 N -0.48 -9.28 18.54 20.01 0.37 -8.91 16 6 C 0.13 1.08 4.52 86.38 0.39 1.47 16 7 N -0.67 -6.97 4.95 -464.53 -2.30 -9.27 16 8 C 0.53 9.98 7.89 87.24 0.69 10.67 16 9 O -0.53 -13.13 16.48 -3.29 -0.05 -13.18 16 10 C 0.52 12.39 7.85 87.24 0.69 13.07 16 11 O -0.50 -12.23 13.60 -3.37 -0.05 -12.28 16 12 N -0.60 -17.91 5.43 -308.89 -1.68 -19.59 16 13 C 0.26 9.57 8.10 133.40 1.08 10.65 16 14 C -0.29 -9.38 9.60 22.12 0.21 -9.17 16 15 C 0.06 2.08 11.43 83.51 0.95 3.04 16 16 N -0.34 -14.42 3.67 -351.85 -1.29 -15.71 16 17 C 0.24 10.54 5.33 85.63 0.46 10.99 16 18 C -0.55 -30.95 9.79 25.60 0.25 -30.70 16 19 H 0.03 1.73 8.06 -2.91 -0.02 1.70 16 20 C 0.01 0.68 5.47 84.65 0.46 1.15 16 21 N -0.94 -57.71 13.96 21.45 0.30 -57.41 16 22 Si 0.96 39.81 27.47 68.60 1.88 41.69 16 23 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 24 H -0.23 -7.91 6.54 99.48 0.65 -7.26 16 25 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 26 N -0.35 -15.52 12.42 -54.53 -0.68 -16.20 16 27 H 0.10 0.04 6.86 -2.39 -0.02 0.02 16 28 H 0.08 0.12 8.14 -2.39 -0.02 0.10 16 29 H 0.07 0.28 8.14 -2.38 -0.02 0.26 16 30 H 0.07 0.23 8.14 -2.38 -0.02 0.21 16 31 H 0.08 0.09 8.14 -2.39 -0.02 0.07 16 32 H 0.10 -0.02 6.86 -2.39 -0.02 -0.04 16 33 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 34 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.43 2.62 5.63 -92.71 -0.52 2.10 16 36 H 0.43 12.11 8.29 -92.71 -0.77 11.34 16 37 H 0.18 5.21 5.91 -2.91 -0.02 5.20 16 38 H 0.22 4.85 8.06 -2.91 -0.02 4.82 16 39 H 0.09 3.28 7.12 -2.39 -0.02 3.26 16 40 H 0.04 1.92 7.57 -2.39 -0.02 1.90 16 41 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -79.94 359.85 3.83 -76.11 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: -0.25 Total: 18.78 kcal Atomic # 6 Polarization: 8.41 SS G_CDS: 7.57 Total: 15.98 kcal Atomic # 7 Polarization: -121.82 SS G_CDS: -5.28 Total: -127.10 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: -0.10 Total: -25.46 kcal Atomic # 14 Polarization: 39.81 SS G_CDS: 1.88 Total: 41.69 kcal Total: -79.94 3.83 -76.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320839763.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.367 kcal (2) G-P(sol) polarization free energy of solvation -79.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds