Wall clock time and date at job start Tue Mar 31 2020 12:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.49740 * 2 1 4 4 C 1.53045 * 109.49748 * 120.06237 * 2 1 3 5 5 C 1.53036 * 109.53595 * 181.31837 * 4 2 1 6 6 C 1.53188 * 109.31387 * 298.63322 * 5 4 2 7 7 N 1.46926 * 108.77534 * 54.64022 * 6 5 4 8 8 C 1.34771 * 120.63191 * 126.36792 * 7 6 5 9 9 O 1.21612 * 119.99898 * 176.04930 * 8 7 6 10 10 C 1.47434 * 120.00290 * 356.04692 * 8 7 6 11 11 C 1.39679 * 120.21125 * 54.04835 * 10 8 7 12 12 C 1.37797 * 119.93720 * 179.74769 * 11 10 8 13 13 C 1.38660 * 120.38351 * 0.53369 * 12 11 10 14 14 C 1.37911 * 120.43626 * 359.73962 * 13 12 11 15 15 C 1.39118 * 120.04886 * 359.97438 * 14 13 12 16 16 S 1.76194 * 120.18762 * 180.02562 * 15 14 13 17 17 C 1.76198 * 100.00234 * 7.79341 * 16 15 14 18 18 H 1.08003 * 120.00274 * 355.60453 * 17 16 15 19 19 C 1.38810 * 120.00411 * 175.60611 * 17 16 15 20 20 N 1.31556 * 119.99457 * 0.02562 * 19 17 16 21 21 Si 1.86791 * 120.00320 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47292 * 89.99981 * 21 19 17 23 23 H 1.48502 * 109.47063 * 209.99852 * 21 19 17 24 24 H 1.48505 * 109.47086 * 329.99966 * 21 19 17 25 25 C 1.46925 * 118.73655 * 306.63841 * 7 6 5 26 26 H 1.08994 * 109.47612 * 299.93443 * 1 2 3 27 27 H 1.09007 * 109.46918 * 59.93872 * 1 2 3 28 28 H 1.09006 * 109.46906 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47292 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.46711 * 300.06292 * 3 2 1 31 31 H 1.09002 * 109.46908 * 60.05978 * 3 2 1 32 32 H 1.08995 * 109.45985 * 61.29771 * 4 2 1 33 33 H 1.09003 * 109.45623 * 301.34046 * 4 2 1 34 34 H 1.09006 * 109.49399 * 178.68041 * 5 4 2 35 35 H 1.09003 * 109.52659 * 58.60617 * 5 4 2 36 36 H 1.08996 * 109.58703 * 294.85037 * 6 5 4 37 37 H 1.09000 * 109.70442 * 174.49316 * 6 5 4 38 38 H 1.08001 * 120.03071 * 359.97438 * 11 10 8 39 39 H 1.08002 * 119.81107 * 180.27893 * 12 11 10 40 40 H 1.08000 * 119.78518 * 179.76896 * 13 12 11 41 41 H 1.08003 * 119.97709 * 179.97438 * 14 13 12 42 42 H 0.97001 * 119.99502 * 180.02562 * 20 19 17 43 43 H 1.09004 * 109.58686 * 173.14168 * 25 7 6 44 44 H 1.09002 * 109.58921 * 293.57709 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0407 1.4423 0.0000 4 6 2.0408 -0.7227 1.2486 5 6 3.5708 -0.6946 1.2662 6 6 4.1053 -1.4266 0.0313 7 7 3.5047 -0.8294 -1.1693 8 6 4.2812 -0.3862 -2.1777 9 8 3.7709 0.0400 -3.1959 10 6 5.7494 -0.4179 -2.0463 11 6 6.4001 -1.6096 -1.7185 12 6 7.7729 -1.6340 -1.6023 13 6 8.5140 -0.4786 -1.7983 14 6 7.8872 0.7078 -2.1170 15 6 6.5026 0.7517 -2.2446 16 16 5.6980 2.2653 -2.6523 17 6 7.1006 3.2732 -3.0009 18 1 8.0966 2.8827 -2.8523 19 6 6.9256 4.5692 -3.4664 20 7 5.7125 5.0450 -3.6468 21 14 8.4126 5.6379 -3.8352 22 1 8.8188 5.4493 -5.2510 23 1 8.0667 7.0636 -3.6052 24 1 9.5343 5.2504 -2.9425 25 6 2.0416 -0.7191 -1.2469 26 1 -0.3634 0.5128 0.8905 27 1 -0.3633 0.5148 -0.8895 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1306 1.4418 -0.0005 30 1 1.6766 1.9565 -0.8895 31 1 1.6784 1.9559 0.8905 32 1 1.6968 -1.7568 1.2359 33 1 1.6581 -0.2238 2.1390 34 1 3.9334 -1.1889 2.1676 35 1 3.9164 0.3392 1.2544 36 1 3.8376 -2.4817 0.0876 37 1 5.1897 -1.3268 -0.0145 38 1 5.8281 -2.5119 -1.5598 39 1 8.2743 -2.5576 -1.3532 40 1 9.5892 -0.5079 -1.7011 41 1 8.4716 1.6034 -2.2676 42 1 5.5902 5.9505 -3.9724 43 1 1.7647 -0.1502 -2.1346 44 1 1.6022 -1.7153 -1.2969 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320949336.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:55 Heat of formation + Delta-G solvation = -17.859665 kcal Electronic energy + Delta-G solvation = -25288.581493 eV Core-core repulsion = 21910.495618 eV Total energy + Delta-G solvation = -3378.085875 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.32876 -38.36170 -37.13736 -34.21410 -32.77726 -31.79065 -30.68259 -30.36770 -27.17792 -26.73866 -25.91362 -25.51937 -22.72231 -22.29561 -21.85273 -19.69018 -18.40462 -17.85409 -16.90168 -16.17992 -15.75488 -15.16141 -15.12013 -14.80060 -14.61348 -14.25971 -14.09045 -13.64394 -13.40975 -13.10634 -12.99630 -12.93080 -12.60936 -12.31421 -12.05858 -11.84455 -11.66306 -11.56963 -11.36700 -11.25188 -11.20715 -11.02588 -10.96060 -10.75071 -10.38476 -10.34330 -10.25216 -9.82275 -9.56730 -9.37098 -8.78283 -8.52002 -8.33291 -8.22088 -6.56405 -6.49644 -4.20465 1.66127 1.96842 3.07122 3.11624 3.17634 3.18652 3.35481 3.43222 4.01216 4.32075 4.62247 4.78565 4.82216 4.92446 5.03943 5.08369 5.11900 5.25167 5.36785 5.40858 5.49179 5.56691 5.59994 5.66366 5.72338 5.79324 5.85689 5.89695 5.97170 6.00601 6.02711 6.07712 6.11329 6.23042 6.29499 6.34352 6.37178 6.55125 6.63997 6.82547 6.85982 7.00172 7.10687 7.41973 7.55875 7.76797 8.13505 8.69674 8.96962 10.56027 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.013653 B = 0.004835 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.343808 B = 5789.497848 C = 7117.148508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.080 4.080 3 C -0.141 4.141 4 C -0.106 4.106 5 C -0.140 4.140 6 C 0.102 3.898 7 N -0.610 5.610 8 C 0.570 3.430 9 O -0.517 6.517 10 C -0.158 4.158 11 C -0.071 4.071 12 C -0.178 4.178 13 C -0.082 4.082 14 C -0.151 4.151 15 C -0.049 4.049 16 S 0.100 5.900 17 C -0.566 4.566 18 H 0.094 0.906 19 C 0.080 3.920 20 N -0.859 5.859 21 Si 0.923 3.077 22 H -0.273 1.273 23 H -0.279 1.279 24 H -0.267 1.267 25 C 0.124 3.876 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.097 0.903 38 H 0.115 0.885 39 H 0.113 0.887 40 H 0.113 0.887 41 H 0.139 0.861 42 H 0.274 0.726 43 H 0.092 0.908 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.550 -12.445 10.410 16.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.081 4.081 3 C -0.198 4.198 4 C -0.143 4.143 5 C -0.178 4.178 6 C -0.021 4.021 7 N -0.344 5.344 8 C 0.359 3.641 9 O -0.392 6.392 10 C -0.171 4.171 11 C -0.091 4.091 12 C -0.203 4.203 13 C -0.103 4.103 14 C -0.176 4.176 15 C -0.167 4.167 16 S 0.361 5.639 17 C -0.713 4.713 18 H 0.112 0.888 19 C -0.131 4.131 20 N -0.492 5.492 21 Si 0.749 3.251 22 H -0.198 1.198 23 H -0.205 1.205 24 H -0.192 1.192 25 C 0.002 3.998 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.115 0.885 38 H 0.133 0.867 39 H 0.131 0.869 40 H 0.131 0.869 41 H 0.156 0.844 42 H 0.084 0.916 43 H 0.111 0.889 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.261 -11.390 9.638 16.181 hybrid contribution 2.250 0.271 -0.093 2.268 sum -4.012 -11.119 9.545 15.193 Atomic orbital electron populations 1.21796 0.94118 1.01540 1.02108 1.20843 0.95377 0.96613 0.95277 1.21879 1.02241 0.94188 1.01521 1.21563 0.95433 1.00057 0.97263 1.21991 0.95970 1.02221 0.97598 1.21905 0.99941 0.96112 0.84180 1.47947 1.06137 1.61953 1.18348 1.18328 0.86721 0.76329 0.82735 1.90800 1.74807 1.44990 1.28573 1.19153 0.91952 0.94222 1.11817 1.20889 0.94685 0.95767 0.97792 1.20660 0.93570 0.98043 1.07987 1.21071 0.98982 0.92764 0.97465 1.21418 0.93759 0.98988 1.03458 1.22847 0.96726 0.99724 0.97427 1.83934 1.10721 0.95506 1.73729 1.23525 0.94592 1.00884 1.52333 0.88846 1.25109 0.97295 0.97095 0.93563 1.69977 1.21007 1.17222 1.40982 0.86075 0.81081 0.78777 0.79203 1.19809 1.20471 1.19192 1.21497 0.79722 0.99883 0.98726 0.92461 0.92301 0.92782 0.91684 0.92385 0.93077 0.92114 0.91911 0.91103 0.90695 0.91998 0.88483 0.86750 0.86925 0.86941 0.84369 0.91553 0.88931 0.92206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 8.48 37.16 0.32 -1.04 16 2 C -0.08 -0.95 0.77 -154.60 -0.12 -1.07 16 3 C -0.14 -2.02 7.98 37.16 0.30 -1.72 16 4 C -0.11 -1.07 4.71 -26.69 -0.13 -1.19 16 5 C -0.14 -1.54 5.74 -26.62 -0.15 -1.69 16 6 C 0.10 1.25 5.53 -3.71 -0.02 1.23 16 7 N -0.61 -9.48 2.42 -174.29 -0.42 -9.91 16 8 C 0.57 11.39 6.56 -12.52 -0.08 11.30 16 9 O -0.52 -12.32 15.48 5.27 0.08 -12.24 16 10 C -0.16 -3.14 4.90 -104.75 -0.51 -3.65 16 11 C -0.07 -1.15 7.42 -39.20 -0.29 -1.44 16 12 C -0.18 -2.71 10.02 -39.59 -0.40 -3.11 16 13 C -0.08 -1.37 10.03 -39.55 -0.40 -1.77 16 14 C -0.15 -3.11 9.25 -39.37 -0.36 -3.47 16 15 C -0.05 -1.11 6.14 -38.39 -0.24 -1.34 16 16 S 0.10 2.66 19.92 -107.50 -2.14 0.52 16 17 C -0.57 -15.51 9.08 30.94 0.28 -15.23 16 18 H 0.09 2.42 4.85 -52.48 -0.25 2.16 16 19 C 0.08 2.19 5.49 -17.46 -0.10 2.09 16 20 N -0.86 -24.66 13.22 55.49 0.73 -23.93 16 21 Si 0.92 20.60 29.55 -169.99 -5.02 15.57 16 22 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 23 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 24 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 25 C 0.12 1.73 5.06 -3.93 -0.02 1.71 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 1.08 5.97 -51.93 -0.31 0.77 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.97 6.34 -51.93 -0.33 0.64 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.10 1.28 4.73 -51.93 -0.25 1.03 16 38 H 0.11 1.53 7.36 -52.49 -0.39 1.14 16 39 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 40 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 41 H 0.14 2.97 4.98 -52.48 -0.26 2.71 16 42 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.09 1.51 7.03 -51.93 -0.36 1.14 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 356.17 15.07 5.37 5.37 Total: -1.00 -31.36 356.17 -9.69 -41.04 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -6.36 Total: 3.96 kcal Atomic # 6 Polarization: -18.47 SS G_CDS: -1.92 Total: -20.39 kcal Atomic # 7 Polarization: -34.15 SS G_CDS: 0.31 Total: -33.83 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: 0.08 Total: -12.24 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: 2.66 SS G_CDS: -2.14 Total: 0.52 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.36 -9.69 -41.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320949336.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.182 kcal (2) G-P(sol) polarization free energy of solvation -31.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds