Wall clock time and date at job start Tue Mar 31 2020 12:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.49740 * 2 1 4 4 C 1.53045 * 109.49748 * 120.06237 * 2 1 3 5 5 C 1.53036 * 109.53595 * 181.31837 * 4 2 1 6 6 C 1.53188 * 109.31387 * 298.63322 * 5 4 2 7 7 N 1.46926 * 108.77534 * 54.64022 * 6 5 4 8 8 C 1.34771 * 120.63191 * 126.36792 * 7 6 5 9 9 O 1.21612 * 119.99898 * 176.04930 * 8 7 6 10 10 C 1.47434 * 120.00290 * 356.04692 * 8 7 6 11 11 C 1.39679 * 120.21125 * 54.04835 * 10 8 7 12 12 C 1.37797 * 119.93720 * 179.74769 * 11 10 8 13 13 C 1.38660 * 120.38351 * 0.53369 * 12 11 10 14 14 C 1.37911 * 120.43626 * 359.73962 * 13 12 11 15 15 C 1.39118 * 120.04886 * 359.97438 * 14 13 12 16 16 S 1.76194 * 120.18762 * 180.02562 * 15 14 13 17 17 C 1.76198 * 100.00234 * 7.79341 * 16 15 14 18 18 H 1.08003 * 120.00274 * 355.60453 * 17 16 15 19 19 C 1.38810 * 120.00411 * 175.60611 * 17 16 15 20 20 N 1.31556 * 119.99457 * 0.02562 * 19 17 16 21 21 Si 1.86791 * 120.00320 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47292 * 89.99981 * 21 19 17 23 23 H 1.48502 * 109.47063 * 209.99852 * 21 19 17 24 24 H 1.48505 * 109.47086 * 329.99966 * 21 19 17 25 25 C 1.46925 * 118.73655 * 306.63841 * 7 6 5 26 26 H 1.08994 * 109.47612 * 299.93443 * 1 2 3 27 27 H 1.09007 * 109.46918 * 59.93872 * 1 2 3 28 28 H 1.09006 * 109.46906 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47292 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.46711 * 300.06292 * 3 2 1 31 31 H 1.09002 * 109.46908 * 60.05978 * 3 2 1 32 32 H 1.08995 * 109.45985 * 61.29771 * 4 2 1 33 33 H 1.09003 * 109.45623 * 301.34046 * 4 2 1 34 34 H 1.09006 * 109.49399 * 178.68041 * 5 4 2 35 35 H 1.09003 * 109.52659 * 58.60617 * 5 4 2 36 36 H 1.08996 * 109.58703 * 294.85037 * 6 5 4 37 37 H 1.09000 * 109.70442 * 174.49316 * 6 5 4 38 38 H 1.08001 * 120.03071 * 359.97438 * 11 10 8 39 39 H 1.08002 * 119.81107 * 180.27893 * 12 11 10 40 40 H 1.08000 * 119.78518 * 179.76896 * 13 12 11 41 41 H 1.08003 * 119.97709 * 179.97438 * 14 13 12 42 42 H 0.97001 * 119.99502 * 180.02562 * 20 19 17 43 43 H 1.09004 * 109.58686 * 173.14168 * 25 7 6 44 44 H 1.09002 * 109.58921 * 293.57709 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0407 1.4423 0.0000 4 6 2.0408 -0.7227 1.2486 5 6 3.5708 -0.6946 1.2662 6 6 4.1053 -1.4266 0.0313 7 7 3.5047 -0.8294 -1.1693 8 6 4.2812 -0.3862 -2.1777 9 8 3.7709 0.0400 -3.1959 10 6 5.7494 -0.4179 -2.0463 11 6 6.4001 -1.6096 -1.7185 12 6 7.7729 -1.6340 -1.6023 13 6 8.5140 -0.4786 -1.7983 14 6 7.8872 0.7078 -2.1170 15 6 6.5026 0.7517 -2.2446 16 16 5.6980 2.2653 -2.6523 17 6 7.1006 3.2732 -3.0009 18 1 8.0966 2.8827 -2.8523 19 6 6.9256 4.5692 -3.4664 20 7 5.7125 5.0450 -3.6468 21 14 8.4126 5.6379 -3.8352 22 1 8.8188 5.4493 -5.2510 23 1 8.0667 7.0636 -3.6052 24 1 9.5343 5.2504 -2.9425 25 6 2.0416 -0.7191 -1.2469 26 1 -0.3634 0.5128 0.8905 27 1 -0.3633 0.5148 -0.8895 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1306 1.4418 -0.0005 30 1 1.6766 1.9565 -0.8895 31 1 1.6784 1.9559 0.8905 32 1 1.6968 -1.7568 1.2359 33 1 1.6581 -0.2238 2.1390 34 1 3.9334 -1.1889 2.1676 35 1 3.9164 0.3392 1.2544 36 1 3.8376 -2.4817 0.0876 37 1 5.1897 -1.3268 -0.0145 38 1 5.8281 -2.5119 -1.5598 39 1 8.2743 -2.5576 -1.3532 40 1 9.5892 -0.5079 -1.7011 41 1 8.4716 1.6034 -2.2676 42 1 5.5902 5.9505 -3.9724 43 1 1.7647 -0.1502 -2.1346 44 1 1.6022 -1.7153 -1.2969 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320949336.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:55 Heat of formation + Delta-G solvation = -35.824518 kcal Electronic energy + Delta-G solvation = -25289.360508 eV Core-core repulsion = 21910.495618 eV Total energy + Delta-G solvation = -3378.864890 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.62282 -39.67124 -38.60313 -35.42220 -34.80890 -32.81862 -32.14208 -31.86139 -28.27477 -27.92236 -27.77594 -26.70414 -24.10684 -23.60455 -23.02616 -21.16289 -19.78081 -19.29842 -18.34127 -17.70667 -17.22235 -16.99298 -16.47887 -15.95757 -15.81097 -15.57787 -15.25021 -15.11308 -14.65467 -14.57963 -14.51389 -14.05034 -13.91209 -13.70976 -13.37095 -13.05480 -12.99992 -12.88896 -12.82841 -12.76604 -12.57548 -12.41198 -12.09105 -11.96378 -11.79098 -11.51699 -11.44232 -11.36673 -11.21239 -10.94992 -10.51828 -10.30494 -9.76325 -9.50773 -8.52209 -8.49827 -6.29428 0.17769 0.49622 1.23920 1.35866 1.43414 1.58107 1.71893 2.10441 2.19265 2.80395 2.93515 3.15777 3.55632 3.79527 3.83691 3.88637 4.03724 4.11455 4.24121 4.26544 4.41226 4.52230 4.59810 4.60586 4.64920 4.69758 4.78790 4.82029 4.86515 4.90651 4.95508 4.98469 5.07969 5.11743 5.14160 5.26084 5.34384 5.34598 5.41146 5.46315 5.52633 5.55695 5.65525 5.69165 6.06436 6.13852 6.42674 6.90865 7.23484 8.57310 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.013653 B = 0.004835 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.343808 B = 5789.497848 C = 7117.148508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.075 4.075 3 C -0.137 4.137 4 C -0.099 4.099 5 C -0.138 4.138 6 C 0.094 3.906 7 N -0.600 5.600 8 C 0.560 3.440 9 O -0.573 6.573 10 C -0.162 4.162 11 C -0.065 4.065 12 C -0.146 4.146 13 C -0.076 4.076 14 C -0.168 4.168 15 C -0.069 4.069 16 S -0.011 6.011 17 C -0.573 4.573 18 H 0.100 0.900 19 C 0.021 3.979 20 N -0.906 5.906 21 Si 0.999 3.001 22 H -0.267 1.267 23 H -0.272 1.272 24 H -0.254 1.254 25 C 0.120 3.880 26 H 0.069 0.931 27 H 0.044 0.956 28 H 0.077 0.923 29 H 0.033 0.967 30 H 0.026 0.974 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.103 0.897 35 H 0.043 0.957 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.155 0.845 39 H 0.168 0.832 40 H 0.152 0.848 41 H 0.120 0.880 42 H 0.276 0.724 43 H 0.054 0.946 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.007 -16.744 13.088 21.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.076 4.076 3 C -0.195 4.195 4 C -0.137 4.137 5 C -0.176 4.176 6 C -0.027 4.027 7 N -0.332 5.332 8 C 0.349 3.651 9 O -0.453 6.453 10 C -0.175 4.175 11 C -0.085 4.085 12 C -0.168 4.168 13 C -0.096 4.096 14 C -0.194 4.194 15 C -0.186 4.186 16 S 0.244 5.756 17 C -0.720 4.720 18 H 0.118 0.882 19 C -0.185 4.185 20 N -0.541 5.541 21 Si 0.820 3.180 22 H -0.192 1.192 23 H -0.197 1.197 24 H -0.177 1.177 25 C -0.002 4.002 26 H 0.088 0.912 27 H 0.063 0.937 28 H 0.096 0.904 29 H 0.052 0.948 30 H 0.045 0.955 31 H 0.086 0.914 32 H 0.107 0.893 33 H 0.095 0.905 34 H 0.121 0.879 35 H 0.062 0.938 36 H 0.120 0.880 37 H 0.107 0.893 38 H 0.172 0.828 39 H 0.185 0.815 40 H 0.169 0.831 41 H 0.138 0.862 42 H 0.085 0.915 43 H 0.073 0.927 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.694 -15.799 12.396 20.623 hybrid contribution 1.800 1.275 -0.795 2.345 sum -2.893 -14.524 11.600 18.812 Atomic orbital electron populations 1.21766 0.92115 1.03074 1.02136 1.20839 0.96881 0.94324 0.95512 1.21841 1.00142 0.96728 1.00754 1.21560 0.94514 1.01385 0.96193 1.21992 0.96825 1.00597 0.98199 1.22240 0.99456 0.98066 0.82947 1.48030 1.06676 1.60315 1.18165 1.18547 0.87297 0.76202 0.83068 1.90768 1.75672 1.47644 1.31211 1.19454 0.92185 0.94750 1.11068 1.21362 0.95698 0.95285 0.96115 1.21325 0.92958 0.99220 1.03337 1.21510 1.01109 0.91471 0.95517 1.21446 0.92858 1.00334 1.04718 1.22702 0.97698 0.98276 0.99933 1.84097 1.13370 0.99937 1.78165 1.23784 0.94565 1.01288 1.52351 0.88250 1.26214 1.00512 0.98472 0.93278 1.70141 1.23507 1.17661 1.42794 0.84945 0.77162 0.76734 0.79192 1.19227 1.19713 1.17750 1.21665 0.78935 1.01242 0.98401 0.91156 0.93681 0.90406 0.94817 0.95485 0.91424 0.89325 0.90505 0.87904 0.93840 0.88038 0.89295 0.82777 0.81461 0.83069 0.86229 0.91508 0.92713 0.89008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 8.48 71.98 0.61 -1.79 16 2 C -0.07 -1.71 0.77 -52.24 -0.04 -1.75 16 3 C -0.14 -4.25 7.98 71.98 0.57 -3.67 16 4 C -0.10 -1.66 4.71 30.62 0.14 -1.52 16 5 C -0.14 -2.67 5.74 30.67 0.18 -2.49 16 6 C 0.09 2.03 5.53 86.36 0.48 2.51 16 7 N -0.60 -18.53 2.42 -823.60 -1.99 -20.52 16 8 C 0.56 23.35 6.56 86.67 0.57 23.92 16 9 O -0.57 -29.74 15.48 -4.07 -0.06 -29.81 16 10 C -0.16 -6.50 4.90 -19.95 -0.10 -6.60 16 11 C -0.06 -1.85 7.42 22.51 0.17 -1.68 16 12 C -0.15 -3.61 10.02 22.27 0.22 -3.39 16 13 C -0.08 -2.27 10.03 22.29 0.22 -2.05 16 14 C -0.17 -7.01 9.25 22.40 0.21 -6.80 16 15 C -0.07 -3.29 6.14 23.04 0.14 -3.15 16 16 S -0.01 -0.67 19.92 -56.49 -1.13 -1.79 16 17 C -0.57 -33.64 9.08 67.96 0.62 -33.02 16 18 H 0.10 5.47 4.85 -2.91 -0.01 5.45 16 19 C 0.02 1.20 5.49 84.87 0.47 1.66 16 20 N -0.91 -55.95 13.22 21.65 0.29 -55.66 16 21 Si 1.00 44.05 29.55 68.60 2.03 46.08 16 22 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 23 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 24 H -0.25 -10.46 7.11 99.48 0.71 -9.75 16 25 C 0.12 3.32 5.06 86.22 0.44 3.76 16 26 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 28 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 29 H 0.03 1.23 5.97 -2.39 -0.01 1.22 16 30 H 0.03 0.95 8.14 -2.38 -0.02 0.94 16 31 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.10 1.37 8.14 -2.38 -0.02 1.36 16 35 H 0.04 1.13 6.34 -2.39 -0.02 1.11 16 36 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.09 2.06 4.73 -2.39 -0.01 2.05 16 38 H 0.15 3.22 7.36 -2.91 -0.02 3.20 16 39 H 0.17 2.54 8.06 -2.91 -0.02 2.52 16 40 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 41 H 0.12 5.35 4.98 -2.91 -0.01 5.34 16 42 H 0.28 15.72 8.31 -92.71 -0.77 14.95 16 43 H 0.05 1.95 7.03 -2.38 -0.02 1.93 16 44 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -80.27 356.17 5.03 -75.24 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: 1.00 Total: 22.54 kcal Atomic # 6 Polarization: -40.96 SS G_CDS: 4.89 Total: -36.07 kcal Atomic # 7 Polarization: -74.48 SS G_CDS: -1.71 Total: -76.19 kcal Atomic # 8 Polarization: -29.74 SS G_CDS: -0.06 Total: -29.81 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Atomic # 16 Polarization: -0.67 SS G_CDS: -1.13 Total: -1.79 kcal Total: -80.27 5.03 -75.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320949336.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.415 kcal (2) G-P(sol) polarization free energy of solvation -80.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds