Wall clock time and date at job start Tue Mar 31 2020 12:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.41380 * 126.80347 * 2 1 4 4 C 1.35451 * 103.98649 * 179.77327 * 3 2 1 5 5 C 1.50706 * 126.77668 * 180.22754 * 4 3 2 6 6 N 1.46493 * 109.47063 * 90.00325 * 5 4 3 7 7 N 1.40210 * 126.59641 * 269.68507 * 6 5 4 8 8 N 1.28761 * 108.37087 * 179.87822 * 7 6 5 9 9 C 1.34405 * 109.51823 * 0.39084 * 8 7 6 10 10 C 1.47525 * 125.76739 * 179.74711 * 9 8 7 11 11 O 1.21591 * 119.99521 * 179.97438 * 10 9 8 12 12 N 1.34773 * 119.99969 * 0.02562 * 10 9 8 13 13 C 1.46501 * 119.99746 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.46873 * 180.02562 * 13 12 10 15 15 C 1.50701 * 109.46891 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00136 * 359.97438 * 15 14 13 17 17 C 1.37881 * 120.00113 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99912 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00080 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47145 * 89.99646 * 19 17 15 21 21 H 1.48499 * 109.46811 * 209.99555 * 19 17 15 22 22 H 1.48499 * 109.47432 * 329.99525 * 19 17 15 23 23 C 1.34818 * 126.59641 * 90.00195 * 6 5 4 24 24 C 1.50699 * 126.57505 * 359.92595 * 23 6 5 25 25 O 1.34041 * 106.44823 * 0.22995 * 4 3 2 26 26 N 1.20916 * 111.56681 * 359.97438 * 25 4 3 27 27 H 1.08995 * 109.47264 * 89.99830 * 1 2 3 28 28 H 1.09002 * 109.46590 * 209.99262 * 1 2 3 29 29 H 1.08996 * 109.47172 * 329.99409 * 1 2 3 30 30 H 1.08002 * 128.00820 * 0.04548 * 3 2 1 31 31 H 1.09003 * 109.46799 * 210.00794 * 5 4 3 32 32 H 1.09005 * 109.46817 * 330.00360 * 5 4 3 33 33 H 0.96998 * 120.00487 * 359.97438 * 12 10 9 34 34 H 1.09000 * 109.47141 * 299.99458 * 13 12 10 35 35 H 1.08998 * 109.47686 * 59.99746 * 13 12 10 36 36 H 1.08997 * 109.47248 * 299.99477 * 14 13 12 37 37 H 1.09001 * 109.47575 * 59.99775 * 14 13 12 38 38 H 0.96995 * 120.00682 * 180.02562 * 18 17 15 39 39 H 1.09002 * 109.47381 * 90.00185 * 24 23 6 40 40 H 1.09003 * 109.46939 * 209.99938 * 24 23 6 41 41 H 1.08997 * 109.47546 * 330.00225 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1320 0.0000 4 6 3.6024 0.6068 0.0052 5 6 4.9022 1.3695 0.0123 6 7 5.3169 1.6148 1.3957 7 7 4.9888 2.7286 2.1817 8 7 5.5348 2.5838 3.3388 9 6 6.2231 1.4297 3.3692 10 6 6.9903 0.9134 4.5187 11 8 7.5762 -0.1485 4.4308 12 7 7.0409 1.6181 5.6663 13 6 7.8024 1.1050 6.8079 14 6 7.6966 2.0887 7.9750 15 6 8.4794 1.5606 9.1495 16 1 8.9998 0.6175 9.0716 17 6 8.5302 2.2810 10.3241 18 7 7.8961 3.4292 10.4193 19 14 9.4999 1.6260 11.7802 20 1 10.8981 2.1208 11.7067 21 1 8.8745 2.0953 13.0427 22 1 9.4978 0.1414 11.7489 23 6 6.0922 0.8159 2.1561 24 6 6.6976 -0.5019 1.7463 25 8 3.4538 -0.7254 0.0027 26 7 2.2869 -1.0424 -0.0027 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3632 -0.8901 0.5137 29 1 -0.3633 0.8899 0.5139 30 1 2.0710 2.1743 0.0007 31 1 5.6684 0.7865 -0.4988 32 1 4.7674 2.3217 -0.5009 33 1 6.5733 2.4650 5.7366 34 1 7.3978 0.1389 7.1098 35 1 8.8483 0.9883 6.5243 36 1 8.1009 3.0550 7.6735 37 1 6.6506 2.2050 8.2587 38 1 7.9321 3.9362 11.2454 39 1 7.6809 -0.3297 1.3086 40 1 6.7970 -1.1439 2.6216 41 1 6.0529 -0.9854 1.0124 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324266603.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:32 Heat of formation + Delta-G solvation = 109.467722 kcal Electronic energy + Delta-G solvation = -25497.568662 eV Core-core repulsion = 21611.003653 eV Total energy + Delta-G solvation = -3886.565009 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.143 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.49558 -42.39499 -38.92427 -35.99504 -35.30310 -34.89671 -33.08358 -32.75927 -31.84606 -29.80019 -29.20133 -28.03857 -27.63169 -24.94363 -23.70719 -23.22620 -21.95378 -20.86602 -20.50215 -20.15341 -18.37761 -18.13628 -17.51879 -16.43791 -16.35613 -16.07827 -15.25159 -15.18767 -14.74420 -14.47534 -14.38095 -14.27568 -13.86415 -13.70780 -13.57134 -13.28498 -13.19662 -13.08571 -12.92647 -12.77268 -12.26155 -12.06299 -11.67981 -11.28356 -11.15946 -11.00851 -10.62014 -10.61137 -10.52794 -10.28957 -10.14196 -9.89656 -9.49683 -9.24817 -9.20262 -8.49914 -8.30610 -6.04511 -4.07514 0.58136 0.94401 1.60495 1.75219 1.96528 2.43739 3.32576 3.38433 3.42038 3.53398 3.54217 3.65403 3.69641 4.04647 4.05399 4.38839 4.43331 4.45748 4.48622 4.69347 4.77888 4.85230 4.98623 5.06414 5.19905 5.25097 5.28348 5.32229 5.48822 5.58239 5.64562 5.82704 6.17096 6.37219 6.38072 6.76895 6.92109 7.56830 7.67722 7.69333 7.76347 7.93735 8.08181 8.31465 8.60188 8.98474 9.56875 11.07071 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.023512 B = 0.002199 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.596262 B =12730.882707 C =12964.902955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.013 3.987 3 C -0.188 4.188 4 C -0.072 4.072 5 C 0.212 3.788 6 N -0.374 5.374 7 N -0.064 5.064 8 N -0.193 5.193 9 C -0.095 4.095 10 C 0.594 3.406 11 O -0.546 6.546 12 N -0.703 5.703 13 C 0.122 3.878 14 C 0.011 3.989 15 C -0.521 4.521 16 H 0.060 0.940 17 C 0.058 3.942 18 N -0.893 5.893 19 Si 0.897 3.103 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.273 1.273 23 C 0.129 3.871 24 C -0.099 4.099 25 O 0.112 5.888 26 N -0.352 5.352 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.178 0.822 31 H 0.126 0.874 32 H 0.141 0.859 33 H 0.406 0.594 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.024 0.976 37 H 0.024 0.976 38 H 0.262 0.738 39 H 0.094 0.906 40 H 0.115 0.885 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.276 -4.053 -27.723 30.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.145 4.145 3 C -0.210 4.210 4 C -0.137 4.137 5 C 0.090 3.910 6 N -0.161 5.161 7 N -0.043 5.043 8 N -0.067 5.067 9 C -0.234 4.234 10 C 0.377 3.623 11 O -0.424 6.424 12 N -0.352 5.352 13 C 0.000 4.000 14 C -0.026 4.026 15 C -0.560 4.560 16 H 0.078 0.922 17 C -0.144 4.144 18 N -0.532 5.532 19 Si 0.725 3.275 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.197 1.197 23 C -0.007 4.007 24 C -0.158 4.158 25 O 0.042 5.958 26 N -0.054 5.054 27 H 0.101 0.899 28 H 0.097 0.903 29 H 0.103 0.897 30 H 0.196 0.804 31 H 0.144 0.856 32 H 0.159 0.841 33 H 0.240 0.760 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.071 0.929 39 H 0.112 0.888 40 H 0.134 0.866 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.884 -4.655 -27.589 30.398 hybrid contribution 0.496 0.249 0.715 0.905 sum -11.388 -4.406 -26.874 29.518 Atomic orbital electron populations 1.20212 0.85447 1.04256 1.03592 1.23709 0.99432 0.88486 1.02875 1.22607 0.90844 1.01682 1.05829 1.24357 0.97918 0.84526 1.06858 1.20064 0.90974 1.01224 0.78755 1.50321 1.36364 1.16834 1.12582 1.81990 1.20997 1.04578 0.96760 1.74642 1.05223 1.14824 1.11986 1.21470 1.09510 0.95613 0.96812 1.16750 0.80015 0.84121 0.81401 1.90734 1.46515 1.22253 1.82917 1.46166 1.51702 1.24551 1.12775 1.21802 0.94429 0.98947 0.84805 1.19340 0.98126 0.94143 0.91028 1.21041 1.31475 1.06479 0.96963 0.92209 1.25005 0.95633 0.94898 0.98824 1.69959 1.42528 1.13581 1.27108 0.86512 0.80003 0.79273 0.81753 1.20589 1.21214 1.19746 1.21987 0.92679 0.95221 0.90848 1.20779 1.00437 0.89734 1.04834 1.84850 1.21842 1.22106 1.67030 1.73883 0.89168 1.24016 1.18321 0.89896 0.90283 0.89684 0.80417 0.85579 0.84138 0.75952 0.92259 0.92209 0.95775 0.95800 0.92855 0.88756 0.86610 0.90587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.43 10.47 36.00 0.38 -0.05 16 2 C 0.01 0.11 7.33 -82.10 -0.60 -0.49 16 3 C -0.19 -1.35 11.06 -39.38 -0.44 -1.78 16 4 C -0.07 -0.52 7.07 -35.30 -0.25 -0.77 16 5 C 0.21 1.11 6.71 -5.19 -0.03 1.07 16 6 N -0.37 -3.77 3.62 -58.02 -0.21 -3.98 16 7 N -0.06 -0.85 13.78 60.35 0.83 -0.02 16 8 N -0.19 -3.02 12.04 32.85 0.40 -2.62 16 9 C -0.10 -1.47 6.99 -83.55 -0.58 -2.06 16 10 C 0.59 10.73 7.82 -12.48 -0.10 10.64 16 11 O -0.55 -10.66 14.72 5.29 0.08 -10.58 16 12 N -0.70 -13.39 5.55 -61.35 -0.34 -13.73 16 13 C 0.12 2.65 5.61 -4.04 -0.02 2.62 16 14 C 0.01 0.28 5.09 -27.88 -0.14 0.14 16 15 C -0.52 -14.59 9.11 -34.44 -0.31 -14.91 16 16 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -26.51 13.29 55.43 0.74 -25.78 16 19 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 23 C 0.13 1.53 7.02 -81.88 -0.57 0.96 16 24 C -0.10 -0.90 9.38 36.01 0.34 -0.57 16 25 O 0.11 1.05 11.20 17.17 0.19 1.24 16 26 N -0.35 -3.71 12.07 33.43 0.40 -3.30 16 27 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.18 0.88 8.06 -52.49 -0.42 0.45 16 31 H 0.13 0.28 7.77 -51.93 -0.40 -0.12 16 32 H 0.14 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.41 7.36 8.16 -40.82 -0.33 7.02 16 34 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.12 1.33 6.43 -51.93 -0.33 1.00 16 41 H 0.08 0.50 7.83 -51.93 -0.41 0.09 16 LS Contribution 363.79 15.07 5.48 5.48 Total: -1.00 -34.98 363.79 -5.14 -40.12 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -5.25 Total: 0.25 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -2.44 Total: -3.64 kcal Atomic # 7 Polarization: -51.25 SS G_CDS: 1.82 Total: -49.43 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.27 Total: -9.34 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.98 -5.14 -40.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324266603.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.584 kcal (2) G-P(sol) polarization free energy of solvation -34.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds