Wall clock time and date at job start Tue Mar 31 2020 12:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.41380 * 126.80347 * 2 1 4 4 C 1.35451 * 103.98649 * 179.77327 * 3 2 1 5 5 C 1.50706 * 126.77668 * 180.22754 * 4 3 2 6 6 N 1.46493 * 109.47063 * 90.00325 * 5 4 3 7 7 N 1.40210 * 126.59641 * 269.68507 * 6 5 4 8 8 N 1.28761 * 108.37087 * 179.87822 * 7 6 5 9 9 C 1.34405 * 109.51823 * 0.39084 * 8 7 6 10 10 C 1.47525 * 125.76739 * 179.74711 * 9 8 7 11 11 O 1.21591 * 119.99521 * 179.97438 * 10 9 8 12 12 N 1.34773 * 119.99969 * 0.02562 * 10 9 8 13 13 C 1.46501 * 119.99746 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.46873 * 180.02562 * 13 12 10 15 15 C 1.50701 * 109.46891 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00136 * 359.97438 * 15 14 13 17 17 C 1.37881 * 120.00113 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99912 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00080 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47145 * 89.99646 * 19 17 15 21 21 H 1.48499 * 109.46811 * 209.99555 * 19 17 15 22 22 H 1.48499 * 109.47432 * 329.99525 * 19 17 15 23 23 C 1.34818 * 126.59641 * 90.00195 * 6 5 4 24 24 C 1.50699 * 126.57505 * 359.92595 * 23 6 5 25 25 O 1.34041 * 106.44823 * 0.22995 * 4 3 2 26 26 N 1.20916 * 111.56681 * 359.97438 * 25 4 3 27 27 H 1.08995 * 109.47264 * 89.99830 * 1 2 3 28 28 H 1.09002 * 109.46590 * 209.99262 * 1 2 3 29 29 H 1.08996 * 109.47172 * 329.99409 * 1 2 3 30 30 H 1.08002 * 128.00820 * 0.04548 * 3 2 1 31 31 H 1.09003 * 109.46799 * 210.00794 * 5 4 3 32 32 H 1.09005 * 109.46817 * 330.00360 * 5 4 3 33 33 H 0.96998 * 120.00487 * 359.97438 * 12 10 9 34 34 H 1.09000 * 109.47141 * 299.99458 * 13 12 10 35 35 H 1.08998 * 109.47686 * 59.99746 * 13 12 10 36 36 H 1.08997 * 109.47248 * 299.99477 * 14 13 12 37 37 H 1.09001 * 109.47575 * 59.99775 * 14 13 12 38 38 H 0.96995 * 120.00682 * 180.02562 * 18 17 15 39 39 H 1.09002 * 109.47381 * 90.00185 * 24 23 6 40 40 H 1.09003 * 109.46939 * 209.99938 * 24 23 6 41 41 H 1.08997 * 109.47546 * 330.00225 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1320 0.0000 4 6 3.6024 0.6068 0.0052 5 6 4.9022 1.3695 0.0123 6 7 5.3169 1.6148 1.3957 7 7 4.9888 2.7286 2.1817 8 7 5.5348 2.5838 3.3388 9 6 6.2231 1.4297 3.3692 10 6 6.9903 0.9134 4.5187 11 8 7.5762 -0.1485 4.4308 12 7 7.0409 1.6181 5.6663 13 6 7.8024 1.1050 6.8079 14 6 7.6966 2.0887 7.9750 15 6 8.4794 1.5606 9.1495 16 1 8.9998 0.6175 9.0716 17 6 8.5302 2.2810 10.3241 18 7 7.8961 3.4292 10.4193 19 14 9.4999 1.6260 11.7802 20 1 10.8981 2.1208 11.7067 21 1 8.8745 2.0953 13.0427 22 1 9.4978 0.1414 11.7489 23 6 6.0922 0.8159 2.1561 24 6 6.6976 -0.5019 1.7463 25 8 3.4538 -0.7254 0.0027 26 7 2.2869 -1.0424 -0.0027 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3632 -0.8901 0.5137 29 1 -0.3633 0.8899 0.5139 30 1 2.0710 2.1743 0.0007 31 1 5.6684 0.7865 -0.4988 32 1 4.7674 2.3217 -0.5009 33 1 6.5733 2.4650 5.7366 34 1 7.3978 0.1389 7.1098 35 1 8.8483 0.9883 6.5243 36 1 8.1009 3.0550 7.6735 37 1 6.6506 2.2050 8.2587 38 1 7.9321 3.9362 11.2454 39 1 7.6809 -0.3297 1.3086 40 1 6.7970 -1.1439 2.6216 41 1 6.0529 -0.9854 1.0124 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324266603.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:32 Heat of formation + Delta-G solvation = 84.408433 kcal Electronic energy + Delta-G solvation = -25498.655314 eV Core-core repulsion = 21611.003653 eV Total energy + Delta-G solvation = -3887.651661 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.143 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -46.11023 -43.39069 -40.38438 -36.79307 -36.58572 -35.86946 -34.81796 -33.84827 -32.77326 -31.55523 -29.70190 -29.07504 -28.32287 -26.79118 -24.58288 -24.26613 -23.12441 -22.42590 -21.49290 -21.10196 -19.33213 -18.82336 -18.49398 -18.31793 -17.35053 -17.03361 -16.73330 -16.42871 -16.36159 -15.64904 -15.31407 -15.20246 -14.85728 -14.61482 -14.28934 -14.27253 -14.20200 -14.04462 -13.95574 -13.54073 -13.44490 -13.21070 -13.04403 -12.92299 -12.51653 -12.36771 -12.23784 -12.10715 -11.67331 -11.47737 -11.46628 -11.08591 -11.05261 -10.73310 -10.59622 -10.35059 -9.94653 -8.21972 -6.33088 -0.13148 0.12297 0.56072 0.97517 1.29685 1.43078 1.44256 1.55663 1.91567 2.18244 2.20379 2.45149 3.10130 3.12501 3.13474 3.17507 3.41240 3.54664 3.69204 3.88556 3.99907 4.23770 4.27945 4.38899 4.49758 4.51267 4.60443 4.62295 4.63326 4.75387 4.78908 4.80728 4.86444 5.00558 5.14442 5.25428 5.40059 5.49350 5.58494 5.79644 6.16309 6.46550 6.80027 6.84305 7.11566 7.13823 7.36133 8.90219 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.023512 B = 0.002199 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.596262 B =12730.882707 C =12964.902955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.001 3.999 3 C -0.191 4.191 4 C -0.073 4.073 5 C 0.203 3.797 6 N -0.357 5.357 7 N -0.069 5.069 8 N -0.220 5.220 9 C -0.128 4.128 10 C 0.596 3.404 11 O -0.564 6.564 12 N -0.708 5.708 13 C 0.142 3.858 14 C 0.020 3.980 15 C -0.544 4.544 16 H 0.064 0.936 17 C 0.003 3.997 18 N -0.929 5.929 19 Si 0.969 3.031 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.264 1.264 23 C 0.146 3.854 24 C -0.097 4.097 25 O 0.100 5.900 26 N -0.387 5.387 27 H 0.099 0.901 28 H 0.072 0.928 29 H 0.099 0.901 30 H 0.200 0.800 31 H 0.165 0.835 32 H 0.174 0.826 33 H 0.409 0.591 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.006 0.994 37 H 0.004 0.996 38 H 0.265 0.735 39 H 0.117 0.883 40 H 0.091 0.909 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.138 -4.420 -29.548 31.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.156 4.156 3 C -0.213 4.213 4 C -0.137 4.137 5 C 0.084 3.916 6 N -0.143 5.143 7 N -0.048 5.048 8 N -0.094 5.094 9 C -0.267 4.267 10 C 0.382 3.618 11 O -0.443 6.443 12 N -0.357 5.357 13 C 0.019 3.981 14 C -0.017 4.017 15 C -0.582 4.582 16 H 0.082 0.918 17 C -0.195 4.195 18 N -0.568 5.568 19 Si 0.793 3.207 20 H -0.197 1.197 21 H -0.207 1.207 22 H -0.188 1.188 23 C 0.008 3.992 24 C -0.155 4.155 25 O 0.032 5.968 26 N -0.092 5.092 27 H 0.117 0.883 28 H 0.091 0.909 29 H 0.118 0.882 30 H 0.217 0.783 31 H 0.182 0.818 32 H 0.191 0.809 33 H 0.244 0.756 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.024 0.976 37 H 0.023 0.977 38 H 0.074 0.926 39 H 0.135 0.865 40 H 0.110 0.890 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -11.758 -5.018 -29.461 32.116 hybrid contribution 0.362 0.367 1.127 1.239 sum -11.396 -4.652 -28.334 30.892 Atomic orbital electron populations 1.20340 0.83874 1.04635 1.04751 1.24271 1.00737 0.88601 1.02018 1.22970 0.90672 1.02412 1.05197 1.24693 0.98781 0.83944 1.06323 1.20776 0.91200 1.03388 0.76278 1.50560 1.34820 1.15279 1.13689 1.81871 1.20705 1.05826 0.96441 1.74619 1.06097 1.15405 1.13323 1.21173 1.11329 0.96905 0.97296 1.17033 0.79657 0.83606 0.81553 1.90714 1.47339 1.22907 1.83346 1.46025 1.51994 1.24987 1.12720 1.21328 0.94650 0.97499 0.84591 1.19152 0.96379 0.94146 0.92038 1.21465 1.31859 1.06829 0.98068 0.91793 1.25944 0.96612 0.95070 1.01916 1.70081 1.43824 1.14841 1.28088 0.85390 0.78555 0.78954 0.77807 1.19673 1.20706 1.18811 1.22300 0.91572 0.95576 0.89762 1.20885 1.02147 0.87859 1.04627 1.84799 1.21503 1.23143 1.67354 1.73878 0.89868 1.25348 1.20086 0.88297 0.90932 0.88246 0.78314 0.81755 0.80869 0.75595 0.92777 0.92460 0.97555 0.97749 0.92592 0.86454 0.89002 0.87551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 10.47 71.23 0.75 -0.01 16 2 C 0.00 0.02 7.33 43.57 0.32 0.34 16 3 C -0.19 -2.30 11.06 22.40 0.25 -2.05 16 4 C -0.07 -0.87 7.07 25.04 0.18 -0.69 16 5 C 0.20 1.33 6.71 85.64 0.57 1.91 16 6 N -0.36 -6.24 3.62 -337.48 -1.22 -7.46 16 7 N -0.07 -1.73 13.78 37.02 0.51 -1.22 16 8 N -0.22 -6.85 12.04 -50.00 -0.60 -7.45 16 9 C -0.13 -3.93 6.99 40.81 0.29 -3.64 16 10 C 0.60 21.83 7.82 86.69 0.68 22.51 16 11 O -0.56 -22.15 14.72 -4.00 -0.06 -22.21 16 12 N -0.71 -27.77 5.55 -466.28 -2.59 -30.36 16 13 C 0.14 6.34 5.61 86.38 0.48 6.82 16 14 C 0.02 1.07 5.09 29.85 0.15 1.22 16 15 C -0.54 -30.92 9.11 25.60 0.23 -30.69 16 16 H 0.06 3.50 7.74 -2.91 -0.02 3.48 16 17 C 0.00 0.18 5.46 84.66 0.46 0.64 16 18 N -0.93 -55.99 13.29 21.45 0.28 -55.70 16 19 Si 0.97 44.27 29.54 68.60 2.03 46.29 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 22 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 23 C 0.15 3.20 7.02 41.71 0.29 3.50 16 24 C -0.10 -1.53 9.38 71.24 0.67 -0.86 16 25 O 0.10 1.70 11.20 71.63 0.80 2.51 16 26 N -0.39 -7.82 12.07 -49.54 -0.60 -8.41 16 27 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.20 1.37 8.06 -2.91 -0.02 1.35 16 31 H 0.16 -0.10 7.77 -2.39 -0.02 -0.12 16 32 H 0.17 0.08 8.14 -2.38 -0.02 0.06 16 33 H 0.41 15.47 8.16 -92.71 -0.76 14.72 16 34 H 0.05 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 36 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 37 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 38 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 39 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.09 2.01 6.43 -2.39 -0.02 2.00 16 41 H 0.11 1.03 7.83 -2.39 -0.02 1.01 16 Total: -1.00 -77.67 363.79 4.20 -73.47 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: 0.32 Total: 11.55 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: 5.32 Total: -1.01 kcal Atomic # 7 Polarization: -106.39 SS G_CDS: -4.21 Total: -110.61 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: 0.74 Total: -19.70 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Total: -77.67 4.20 -73.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324266603.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.878 kcal (2) G-P(sol) polarization free energy of solvation -77.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds