Wall clock time and date at job start Tue Mar 31 2020 13:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47068 * 2 1 4 4 C 1.50691 * 109.47445 * 239.99822 * 2 1 3 5 5 H 1.08001 * 120.00311 * 240.00508 * 4 2 1 6 6 C 1.37880 * 120.00178 * 60.00113 * 4 2 1 7 7 N 1.31510 * 119.99628 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00210 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47371 * 0.02562 * 8 6 4 10 10 H 1.48509 * 109.47210 * 119.99626 * 8 6 4 11 11 H 1.48496 * 109.47138 * 239.99847 * 8 6 4 12 12 C 1.53003 * 109.47117 * 119.99375 * 2 1 3 13 13 N 1.46500 * 109.47434 * 302.48708 * 12 2 1 14 14 C 1.34767 * 119.99991 * 184.36518 * 13 12 2 15 15 O 1.21284 * 120.00115 * 355.27736 * 14 13 12 16 16 C 1.50702 * 120.00221 * 175.27441 * 14 13 12 17 17 S 1.81395 * 115.54916 * 315.24368 * 16 14 13 18 18 C 1.76209 * 102.99762 * 294.02401 * 17 16 14 19 19 C 1.38973 * 120.07554 * 354.19317 * 18 17 16 20 20 C 1.38089 * 119.91419 * 179.76700 * 19 18 17 21 21 C 1.38307 * 120.07909 * 0.51421 * 20 19 18 22 22 C 1.38299 * 120.16135 * 359.74178 * 21 20 19 23 23 C 1.38084 * 120.08196 * 359.97438 * 22 21 20 24 24 C 1.53000 * 117.49681 * 100.90421 * 16 14 13 25 25 C 1.52997 * 117.50297 * 169.56434 * 16 14 13 26 26 H 1.09005 * 109.47300 * 304.78735 * 1 2 3 27 27 H 1.09000 * 109.47055 * 64.78207 * 1 2 3 28 28 H 1.08993 * 109.47083 * 184.78354 * 1 2 3 29 29 H 1.09010 * 109.46927 * 179.97438 * 3 2 1 30 30 H 1.08995 * 109.47235 * 299.99491 * 3 2 1 31 31 H 1.09003 * 109.47298 * 59.99967 * 3 2 1 32 32 H 0.97007 * 119.99756 * 180.02562 * 7 6 4 33 33 H 1.08997 * 109.47357 * 182.47831 * 12 2 1 34 34 H 1.09003 * 109.46461 * 62.48565 * 12 2 1 35 35 H 0.96999 * 119.99365 * 4.36141 * 13 12 2 36 36 H 1.07994 * 120.04606 * 0.02562 * 19 18 17 37 37 H 1.07995 * 119.95926 * 180.27170 * 20 19 18 38 38 H 1.07994 * 119.91682 * 179.71843 * 21 20 19 39 39 H 1.08000 * 119.95891 * 180.02562 * 22 21 20 40 40 H 1.08006 * 120.04254 * 180.02562 * 23 22 21 41 41 H 1.09004 * 117.50118 * 215.00586 * 24 16 14 42 42 H 1.09000 * 117.50116 * 0.03269 * 24 16 14 43 43 H 1.08998 * 117.49878 * 359.97438 * 25 16 14 44 44 H 1.08995 * 117.50066 * 144.97741 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2303 5 1 2.6532 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3215 -1.1204 -4.0078 9 1 3.1456 -2.2878 -3.6036 10 1 1.1662 -1.5868 -4.8160 11 1 3.1467 -0.1875 -4.8163 12 6 2.0400 -0.7211 1.2493 13 7 1.5034 -0.0659 2.4447 14 6 1.8894 -0.4766 3.6689 15 8 2.6135 -1.4426 3.7841 16 6 1.4213 0.2647 4.8947 17 16 1.5098 2.0738 4.7964 18 6 3.2425 2.3815 4.7067 19 6 4.1441 1.3331 4.8452 20 6 5.5011 1.5773 4.7695 21 6 5.9635 2.8650 4.5669 22 6 5.0692 3.9115 4.4339 23 6 3.7107 3.6740 4.5026 24 6 0.2639 -0.3438 5.6892 25 6 1.6855 -0.3826 6.2556 26 1 -0.3634 0.5863 0.8440 27 1 -0.3633 0.4378 -0.9297 28 1 -0.3633 -1.0240 0.0857 29 1 3.1301 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 0.7082 1.1607 -3.4845 33 1 3.1290 -0.6828 1.2719 34 1 1.7134 -1.7609 1.2273 35 1 0.8703 0.6635 2.3550 36 1 3.7839 0.3280 5.0076 37 1 6.2023 0.7625 4.8727 38 1 7.0254 3.0537 4.5127 39 1 5.4338 4.9157 4.2754 40 1 3.0129 4.4917 4.3983 41 1 -0.4443 0.3430 6.1528 42 1 -0.1586 -1.2805 5.3256 43 1 2.1974 -1.3449 6.2644 44 1 1.9129 0.2785 7.0918 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331156371.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:17 Heat of formation + Delta-G solvation = 10.810048 kcal Electronic energy + Delta-G solvation = -24918.431845 eV Core-core repulsion = 21541.589182 eV Total energy + Delta-G solvation = -3376.842663 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.80529 -38.83644 -36.92553 -35.84003 -33.30614 -31.04658 -30.94312 -30.85864 -26.31749 -25.70359 -25.26605 -23.68908 -22.80337 -22.69749 -22.27879 -20.02906 -18.79627 -18.06924 -17.56735 -15.96296 -15.85587 -15.69383 -15.19985 -14.89968 -14.76643 -14.44372 -14.25901 -13.65863 -13.41704 -13.11420 -13.05368 -12.88740 -12.71128 -12.19697 -11.96640 -11.73492 -11.39658 -11.27101 -11.20578 -11.17991 -10.88075 -10.73698 -10.67353 -10.47954 -10.38103 -10.17188 -9.75589 -9.62904 -9.58252 -9.27195 -8.98028 -8.78243 -8.47216 -8.32966 -7.44783 -6.01387 -4.11857 1.16705 1.34529 1.36927 2.07968 2.84920 3.27110 3.35565 3.39093 3.46115 3.62631 3.71511 4.39246 4.40214 4.58549 4.84458 4.88344 4.92889 5.09785 5.25112 5.34823 5.37231 5.38567 5.51060 5.62574 5.73004 5.87321 5.97517 6.20990 6.26268 6.30372 6.36259 6.49202 6.51809 6.73961 6.87147 6.88798 6.94571 7.01754 7.03699 7.36689 7.57079 7.69925 7.99847 8.03153 8.15251 8.38860 8.58684 8.88801 9.53900 10.99720 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.013784 B = 0.004133 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.894198 B = 6772.912728 C = 7664.279229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.057 3.943 3 C -0.130 4.130 4 C -0.504 4.504 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.892 3.108 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.133 3.867 13 N -0.700 5.700 14 C 0.543 3.457 15 O -0.545 6.545 16 C -0.180 4.180 17 S -0.041 6.041 18 C -0.090 4.090 19 C -0.120 4.120 20 C -0.101 4.101 21 C -0.124 4.124 22 C -0.106 4.106 23 C -0.099 4.099 24 C -0.113 4.113 25 C -0.127 4.127 26 H 0.007 0.993 27 H 0.088 0.912 28 H 0.025 0.975 29 H 0.024 0.976 30 H 0.085 0.915 31 H 0.009 0.991 32 H 0.259 0.741 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.403 0.597 36 H 0.132 0.868 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.126 0.874 40 H 0.126 0.874 41 H 0.113 0.887 42 H 0.112 0.888 43 H 0.115 0.885 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.916 4.864 17.467 18.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.056 3.944 3 C -0.187 4.187 4 C -0.543 4.543 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.720 3.280 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.011 3.989 13 N -0.349 5.349 14 C 0.325 3.675 15 O -0.424 6.424 16 C -0.294 4.294 17 S 0.205 5.795 18 C -0.203 4.203 19 C -0.144 4.144 20 C -0.121 4.121 21 C -0.144 4.144 22 C -0.126 4.126 23 C -0.123 4.123 24 C -0.152 4.152 25 C -0.167 4.167 26 H 0.026 0.974 27 H 0.107 0.893 28 H 0.044 0.956 29 H 0.043 0.957 30 H 0.104 0.896 31 H 0.028 0.972 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.240 0.760 36 H 0.150 0.850 37 H 0.142 0.858 38 H 0.141 0.859 39 H 0.144 0.856 40 H 0.144 0.856 41 H 0.131 0.869 42 H 0.131 0.869 43 H 0.134 0.866 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.324 5.047 17.339 18.107 hybrid contribution 1.141 -0.892 -1.103 1.820 sum 2.465 4.155 16.236 16.940 Atomic orbital electron populations 1.21838 0.97784 0.98326 1.01042 1.18352 0.92797 0.92872 0.90346 1.21811 0.98435 0.98225 1.00254 1.21008 1.31380 1.12050 0.89870 0.92465 1.24874 0.94887 0.94925 0.98824 1.69814 1.36642 1.22763 1.23098 0.86528 0.78645 0.79750 0.83033 1.19794 1.21047 1.21049 1.21787 0.97650 0.96193 0.83314 1.46183 1.45781 1.37596 1.05379 1.19079 0.80895 0.83835 0.83698 1.90674 1.37969 1.27404 1.86367 1.23974 1.12869 0.95645 0.96863 1.85008 1.02262 1.00410 1.91810 1.21800 0.96831 0.96881 1.04763 1.21442 0.93590 0.98606 1.00727 1.21087 0.95115 0.97000 0.98912 1.21181 0.99699 0.92899 1.00659 1.21038 0.92635 0.99229 0.99672 1.20723 0.95894 0.94770 1.00898 1.23033 0.91154 1.02039 0.99001 1.23299 0.98514 1.02997 0.91893 0.97425 0.89302 0.95628 0.95655 0.89639 0.97211 0.93053 0.92651 0.92716 0.76046 0.84989 0.85830 0.85948 0.85633 0.85622 0.86879 0.86932 0.86646 0.87039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 8.03 37.16 0.30 -2.72 16 2 C 0.06 1.34 0.51 -155.66 -0.08 1.27 16 3 C -0.13 -3.03 8.10 37.16 0.30 -2.73 16 4 C -0.50 -13.32 8.01 -34.44 -0.28 -13.60 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.75 5.14 -17.82 -0.09 1.66 16 7 N -0.88 -23.72 9.33 55.43 0.52 -23.21 16 8 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 9 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 C 0.13 2.88 4.51 -4.04 -0.02 2.86 16 13 N -0.70 -13.04 4.86 -60.29 -0.29 -13.34 16 14 C 0.54 9.54 6.00 -10.99 -0.07 9.48 16 15 O -0.54 -11.07 15.75 5.55 0.09 -10.99 16 16 C -0.18 -2.43 1.37 -91.77 -0.13 -2.56 16 17 S -0.04 -0.55 21.39 -107.50 -2.30 -2.85 16 18 C -0.09 -1.29 6.09 -39.04 -0.24 -1.53 16 19 C -0.12 -1.78 8.94 -39.36 -0.35 -2.13 16 20 C -0.10 -1.33 10.04 -39.61 -0.40 -1.73 16 21 C -0.12 -1.45 10.04 -39.53 -0.40 -1.84 16 22 C -0.11 -1.22 10.04 -39.62 -0.40 -1.62 16 23 C -0.10 -1.28 9.79 -39.37 -0.39 -1.66 16 24 C -0.11 -1.18 10.00 -26.69 -0.27 -1.44 16 25 C -0.13 -1.39 8.89 -26.70 -0.24 -1.63 16 26 H 0.01 0.14 6.78 -51.93 -0.35 -0.21 16 27 H 0.09 2.25 5.96 -51.93 -0.31 1.94 16 28 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.02 0.59 8.14 -51.92 -0.42 0.17 16 30 H 0.08 2.19 6.07 -51.93 -0.32 1.87 16 31 H 0.01 0.19 7.11 -51.93 -0.37 -0.18 16 32 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 33 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.40 7.19 5.90 -40.82 -0.24 6.95 16 36 H 0.13 2.07 4.47 -52.49 -0.23 1.83 16 37 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 38 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 39 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 40 H 0.13 1.41 8.06 -52.48 -0.42 0.99 16 41 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.11 1.16 8.14 -51.93 -0.42 0.73 16 43 H 0.12 1.34 7.71 -51.93 -0.40 0.94 16 44 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 366.97 15.07 5.53 5.53 Total: -1.00 -28.96 366.97 -10.62 -39.58 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -6.41 Total: 9.38 kcal Atomic # 6 Polarization: -17.20 SS G_CDS: -2.73 Total: -19.93 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: 0.22 Total: -36.54 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.09 Total: -10.99 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: -0.55 SS G_CDS: -2.30 Total: -2.85 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -28.96 -10.62 -39.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331156371.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.391 kcal (2) G-P(sol) polarization free energy of solvation -28.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds