Wall clock time and date at job start Tue Mar 31 2020 12:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35450 * 126.77551 * 2 1 4 4 C 1.41375 * 103.98779 * 180.02562 * 3 2 1 5 5 C 1.50703 * 126.80544 * 180.02562 * 4 3 2 6 6 N 1.46499 * 109.47249 * 125.02113 * 5 4 3 7 7 N 1.40211 * 126.59486 * 90.02429 * 6 5 4 8 8 N 1.28757 * 108.37007 * 179.97438 * 7 6 5 9 9 C 1.34397 * 109.52029 * 0.02562 * 8 7 6 10 10 C 1.47527 * 125.77237 * 179.97438 * 9 8 7 11 11 O 1.21592 * 120.00396 * 179.97438 * 10 9 8 12 12 N 1.34782 * 119.99788 * 359.97438 * 10 9 8 13 13 C 1.46498 * 120.00101 * 180.02562 * 12 10 9 14 14 H 1.09002 * 109.47087 * 34.99449 * 13 12 10 15 15 C 1.53003 * 109.46916 * 274.99548 * 13 12 10 16 16 C 1.50698 * 109.47226 * 154.99506 * 13 12 10 17 17 H 1.07998 * 119.99870 * 0.02562 * 16 13 12 18 18 C 1.37879 * 120.00134 * 179.97438 * 16 13 12 19 19 N 1.31518 * 119.99591 * 0.02562 * 18 16 13 20 20 Si 1.86801 * 120.00212 * 179.97438 * 18 16 13 21 21 H 1.48502 * 109.46756 * 60.00149 * 20 18 16 22 22 H 1.48495 * 109.47126 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.46938 * 300.00267 * 20 18 16 24 24 C 1.34809 * 126.59484 * 269.70932 * 6 5 4 25 25 C 1.50705 * 126.57882 * 0.04296 * 24 6 5 26 26 N 1.30174 * 106.39554 * 359.97438 * 4 3 2 27 27 O 1.20925 * 111.60250 * 0.02562 * 26 4 3 28 28 H 1.09002 * 109.47431 * 90.00274 * 1 2 3 29 29 H 1.09000 * 109.47413 * 210.00329 * 1 2 3 30 30 H 1.09005 * 109.47372 * 330.00278 * 1 2 3 31 31 H 1.08003 * 128.00987 * 359.97438 * 3 2 1 32 32 H 1.09000 * 109.46772 * 245.02246 * 5 4 3 33 33 H 1.08996 * 109.47060 * 5.01883 * 5 4 3 34 34 H 0.96997 * 119.99644 * 359.97438 * 12 10 9 35 35 H 1.08993 * 109.46987 * 300.00077 * 15 13 12 36 36 H 1.09000 * 109.46966 * 60.00278 * 15 13 12 37 37 H 1.09000 * 109.46750 * 180.02562 * 15 13 12 38 38 H 0.97006 * 119.99697 * 180.02562 * 19 18 16 39 39 H 1.08998 * 109.46883 * 90.00315 * 25 24 6 40 40 H 1.09000 * 109.46675 * 209.99333 * 25 24 6 41 41 H 1.08996 * 109.47305 * 329.99481 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0849 0.0000 4 6 3.6213 0.5374 -0.0006 5 6 4.9210 1.3001 -0.0003 6 7 5.7436 0.8629 1.1303 7 7 6.6798 -0.1809 1.1287 8 7 7.1999 -0.2614 2.3038 9 6 6.6596 0.6776 3.0993 10 6 6.9961 0.9039 4.5177 11 8 6.4403 1.7877 5.1409 12 7 7.9196 0.1308 5.1228 13 6 8.2534 0.3551 6.5315 14 1 7.3587 0.6640 7.0722 15 6 9.3160 1.4511 6.6356 16 6 8.7871 -0.9205 7.1306 17 1 8.8698 -1.8093 6.5227 18 6 9.1708 -0.9527 8.4545 19 7 9.0705 0.1299 9.1946 20 14 9.8317 -2.5341 9.1973 21 1 11.0500 -2.9557 8.4604 22 1 10.1713 -2.3064 10.6249 23 1 8.7997 -3.5971 9.0969 24 6 5.7503 1.3906 2.3708 25 6 4.9122 2.5432 2.8610 26 7 3.4763 -0.7563 -0.0003 27 8 2.3095 -1.0735 -0.0002 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 2.0344 2.1271 -0.0004 32 1 5.4538 1.1104 -0.9321 33 1 4.7162 2.3668 0.0903 34 1 8.3626 -0.5745 4.6257 35 1 10.2105 1.1422 6.0949 36 1 8.9299 2.3737 6.2023 37 1 9.5646 1.6176 7.6837 38 1 9.3408 0.1073 10.1260 39 1 3.9725 2.1641 3.2627 40 1 5.4517 3.0782 3.6425 41 1 4.7062 3.2209 2.0325 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361818151.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:14 Heat of formation + Delta-G solvation = 115.724764 kcal Electronic energy + Delta-G solvation = -26085.778576 eV Core-core repulsion = 22199.484892 eV Total energy + Delta-G solvation = -3886.293683 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.143 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.41380 -42.10265 -38.52992 -36.16087 -34.81665 -34.18381 -33.44231 -32.28220 -31.97351 -29.29510 -28.38825 -27.88101 -27.43480 -25.18633 -23.70405 -23.27797 -22.12215 -20.80783 -20.08332 -19.42281 -18.19822 -17.81638 -17.67511 -16.40554 -16.27398 -15.41882 -15.20386 -14.94317 -14.49277 -14.29054 -14.09143 -13.98996 -13.79561 -13.70333 -13.43314 -13.06868 -13.00460 -12.87378 -12.61570 -12.32621 -11.81633 -11.62190 -11.60903 -11.05635 -10.97586 -10.90090 -10.72733 -10.69241 -10.29623 -10.27356 -10.16183 -9.78846 -9.20778 -9.00744 -8.91831 -8.48367 -7.83775 -6.06128 -4.14352 0.99277 1.18550 1.48634 2.08732 2.23711 2.65016 3.32525 3.36323 3.39228 3.50995 3.79873 3.96095 4.04488 4.30952 4.33371 4.45081 4.51972 4.58073 4.69809 4.75024 4.87828 4.91106 5.07860 5.14623 5.26269 5.29449 5.37748 5.46230 5.52613 5.67864 5.89887 6.14068 6.43498 6.88862 7.03115 7.20172 7.48800 7.61907 7.76253 7.81525 7.96053 8.13342 8.20258 8.74353 8.83272 9.14189 9.52509 10.99988 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.020219 B = 0.002680 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.489986 B =10444.856514 C =10763.416445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.029 4.029 3 C -0.222 4.222 4 C -0.017 4.017 5 C 0.210 3.790 6 N -0.369 5.369 7 N -0.063 5.063 8 N -0.199 5.199 9 C -0.090 4.090 10 C 0.588 3.412 11 O -0.553 6.553 12 N -0.689 5.689 13 C 0.265 3.735 14 H 0.051 0.949 15 C -0.147 4.147 16 C -0.532 4.532 17 H 0.062 0.938 18 C 0.066 3.934 19 N -0.885 5.885 20 Si 0.902 3.098 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.276 1.276 24 C 0.116 3.884 25 C -0.092 4.092 26 N -0.332 5.332 27 O 0.112 5.888 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.177 0.823 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.397 0.603 35 H 0.027 0.973 36 H 0.015 0.985 37 H 0.091 0.909 38 H 0.264 0.736 39 H 0.087 0.913 40 H 0.115 0.885 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.131 6.072 -21.264 27.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.092 4.092 3 C -0.244 4.244 4 C -0.177 4.177 5 C 0.087 3.913 6 N -0.157 5.157 7 N -0.042 5.042 8 N -0.073 5.073 9 C -0.229 4.229 10 C 0.371 3.629 11 O -0.432 6.432 12 N -0.335 5.335 13 C 0.163 3.837 14 H 0.069 0.931 15 C -0.206 4.206 16 C -0.571 4.571 17 H 0.080 0.920 18 C -0.137 4.137 19 N -0.523 5.523 20 Si 0.730 3.270 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.202 1.202 24 C -0.020 4.020 25 C -0.150 4.150 26 N -0.031 5.031 27 O 0.040 5.960 28 H 0.108 0.892 29 H 0.104 0.896 30 H 0.112 0.888 31 H 0.194 0.806 32 H 0.141 0.859 33 H 0.142 0.858 34 H 0.231 0.769 35 H 0.046 0.954 36 H 0.034 0.966 37 H 0.110 0.890 38 H 0.074 0.926 39 H 0.106 0.894 40 H 0.134 0.866 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.902 4.635 -21.430 27.085 hybrid contribution -0.255 0.271 0.490 0.616 sum -16.157 4.906 -20.940 26.900 Atomic orbital electron populations 1.20381 0.83656 1.05038 1.04255 1.24601 0.96647 0.85942 1.02045 1.22357 0.90437 1.01324 1.10255 1.23527 0.96763 0.90852 1.06533 1.19964 0.84612 0.97862 0.88846 1.50170 1.30632 1.25752 1.09113 1.82010 1.03094 1.04578 1.14478 1.74626 1.18024 1.16657 0.97952 1.21699 1.03442 0.99660 0.98087 1.16778 0.80651 0.82667 0.82842 1.90700 1.54322 1.33588 1.64567 1.46398 1.38587 1.33735 1.14812 1.18809 0.95290 0.94914 0.74656 0.93136 1.22082 0.98316 0.96509 1.03655 1.21209 1.43940 0.95905 0.96018 0.91973 1.24871 0.95312 0.96711 0.96763 1.69897 1.47208 1.27438 1.07759 0.86493 0.79404 0.83152 0.77986 1.20112 1.21172 1.20162 1.21914 0.97798 0.97538 0.84712 1.20681 0.99263 0.92695 1.02379 1.74001 0.96796 1.15925 1.16415 1.84897 1.11211 1.33357 1.66525 0.89195 0.89563 0.88780 0.80570 0.85923 0.85797 0.76938 0.95363 0.96566 0.89026 0.92583 0.89406 0.86618 0.91195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.22 10.45 36.00 0.38 0.15 16 2 C -0.03 -0.21 7.49 -35.31 -0.26 -0.47 16 3 C -0.22 -1.49 11.05 -39.38 -0.44 -1.92 16 4 C -0.02 -0.17 6.91 -82.10 -0.57 -0.73 16 5 C 0.21 1.79 6.89 -5.19 -0.04 1.76 16 6 N -0.37 -5.01 3.62 -58.02 -0.21 -5.22 16 7 N -0.06 -1.08 13.78 60.35 0.83 -0.24 16 8 N -0.20 -3.81 12.04 32.85 0.40 -3.41 16 9 C -0.09 -1.70 6.99 -83.55 -0.58 -2.28 16 10 C 0.59 12.92 7.78 -12.47 -0.10 12.82 16 11 O -0.55 -12.98 14.39 5.28 0.08 -12.90 16 12 N -0.69 -16.03 5.07 -55.98 -0.28 -16.32 16 13 C 0.26 7.03 2.56 -69.08 -0.18 6.85 16 14 H 0.05 1.50 7.58 -51.93 -0.39 1.11 16 15 C -0.15 -3.77 9.26 37.16 0.34 -3.42 16 16 C -0.53 -14.76 8.73 -34.44 -0.30 -15.06 16 17 H 0.06 1.68 7.74 -52.49 -0.41 1.27 16 18 C 0.07 1.84 5.30 -17.82 -0.09 1.74 16 19 N -0.89 -25.37 11.32 55.43 0.63 -24.74 16 20 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 C 0.12 1.74 7.02 -81.87 -0.57 1.17 16 25 C -0.09 -1.04 9.56 36.01 0.34 -0.69 16 26 N -0.33 -4.23 12.07 33.42 0.40 -3.83 16 27 O 0.11 1.21 11.20 17.19 0.19 1.40 16 28 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 29 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.09 0.14 8.14 -51.93 -0.42 -0.29 16 31 H 0.18 0.57 8.06 -52.48 -0.42 0.15 16 32 H 0.12 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.12 0.56 7.14 -51.93 -0.37 0.19 16 34 H 0.40 8.74 8.22 -40.82 -0.34 8.41 16 35 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.09 2.51 6.07 -51.93 -0.32 2.20 16 38 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 39 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.12 1.57 6.44 -51.93 -0.33 1.23 16 41 H 0.07 0.50 7.18 -51.93 -0.37 0.12 16 LS Contribution 358.07 15.07 5.40 5.40 Total: -1.00 -35.40 358.07 -4.70 -40.10 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -5.05 Total: 3.52 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -2.07 Total: -0.09 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: 1.76 Total: -53.77 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.27 Total: -11.51 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.40 -4.70 -40.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361818151.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.829 kcal (2) G-P(sol) polarization free energy of solvation -35.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds