Wall clock time and date at job start Tue Mar 31 2020 12:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35450 * 126.77551 * 2 1 4 4 C 1.41375 * 103.98779 * 180.02562 * 3 2 1 5 5 C 1.50703 * 126.80544 * 180.02562 * 4 3 2 6 6 N 1.46499 * 109.47249 * 125.02113 * 5 4 3 7 7 N 1.40211 * 126.59486 * 90.02429 * 6 5 4 8 8 N 1.28757 * 108.37007 * 179.97438 * 7 6 5 9 9 C 1.34397 * 109.52029 * 0.02562 * 8 7 6 10 10 C 1.47527 * 125.77237 * 179.97438 * 9 8 7 11 11 O 1.21592 * 120.00396 * 179.97438 * 10 9 8 12 12 N 1.34782 * 119.99788 * 359.97438 * 10 9 8 13 13 C 1.46498 * 120.00101 * 180.02562 * 12 10 9 14 14 H 1.09002 * 109.47087 * 34.99449 * 13 12 10 15 15 C 1.53003 * 109.46916 * 274.99548 * 13 12 10 16 16 C 1.50698 * 109.47226 * 154.99506 * 13 12 10 17 17 H 1.07998 * 119.99870 * 0.02562 * 16 13 12 18 18 C 1.37879 * 120.00134 * 179.97438 * 16 13 12 19 19 N 1.31518 * 119.99591 * 0.02562 * 18 16 13 20 20 Si 1.86801 * 120.00212 * 179.97438 * 18 16 13 21 21 H 1.48502 * 109.46756 * 60.00149 * 20 18 16 22 22 H 1.48495 * 109.47126 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.46938 * 300.00267 * 20 18 16 24 24 C 1.34809 * 126.59484 * 269.70932 * 6 5 4 25 25 C 1.50705 * 126.57882 * 0.04296 * 24 6 5 26 26 N 1.30174 * 106.39554 * 359.97438 * 4 3 2 27 27 O 1.20925 * 111.60250 * 0.02562 * 26 4 3 28 28 H 1.09002 * 109.47431 * 90.00274 * 1 2 3 29 29 H 1.09000 * 109.47413 * 210.00329 * 1 2 3 30 30 H 1.09005 * 109.47372 * 330.00278 * 1 2 3 31 31 H 1.08003 * 128.00987 * 359.97438 * 3 2 1 32 32 H 1.09000 * 109.46772 * 245.02246 * 5 4 3 33 33 H 1.08996 * 109.47060 * 5.01883 * 5 4 3 34 34 H 0.96997 * 119.99644 * 359.97438 * 12 10 9 35 35 H 1.08993 * 109.46987 * 300.00077 * 15 13 12 36 36 H 1.09000 * 109.46966 * 60.00278 * 15 13 12 37 37 H 1.09000 * 109.46750 * 180.02562 * 15 13 12 38 38 H 0.97006 * 119.99697 * 180.02562 * 19 18 16 39 39 H 1.08998 * 109.46883 * 90.00315 * 25 24 6 40 40 H 1.09000 * 109.46675 * 209.99333 * 25 24 6 41 41 H 1.08996 * 109.47305 * 329.99481 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0849 0.0000 4 6 3.6213 0.5374 -0.0006 5 6 4.9210 1.3001 -0.0003 6 7 5.7436 0.8629 1.1303 7 7 6.6798 -0.1809 1.1287 8 7 7.1999 -0.2614 2.3038 9 6 6.6596 0.6776 3.0993 10 6 6.9961 0.9039 4.5177 11 8 6.4403 1.7877 5.1409 12 7 7.9196 0.1308 5.1228 13 6 8.2534 0.3551 6.5315 14 1 7.3587 0.6640 7.0722 15 6 9.3160 1.4511 6.6356 16 6 8.7871 -0.9205 7.1306 17 1 8.8698 -1.8093 6.5227 18 6 9.1708 -0.9527 8.4545 19 7 9.0705 0.1299 9.1946 20 14 9.8317 -2.5341 9.1973 21 1 11.0500 -2.9557 8.4604 22 1 10.1713 -2.3064 10.6249 23 1 8.7997 -3.5971 9.0969 24 6 5.7503 1.3906 2.3708 25 6 4.9122 2.5432 2.8610 26 7 3.4763 -0.7563 -0.0003 27 8 2.3095 -1.0735 -0.0002 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 2.0344 2.1271 -0.0004 32 1 5.4538 1.1104 -0.9321 33 1 4.7162 2.3668 0.0903 34 1 8.3626 -0.5745 4.6257 35 1 10.2105 1.1422 6.0949 36 1 8.9299 2.3737 6.2023 37 1 9.5646 1.6176 7.6837 38 1 9.3408 0.1073 10.1260 39 1 3.9725 2.1641 3.2627 40 1 5.4517 3.0782 3.6425 41 1 4.7062 3.2209 2.0325 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361818151.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:13 Heat of formation + Delta-G solvation = 89.564186 kcal Electronic energy + Delta-G solvation = -26086.912983 eV Core-core repulsion = 22199.484892 eV Total energy + Delta-G solvation = -3887.428091 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.143 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -46.07319 -43.35946 -40.30051 -37.04545 -36.77145 -34.88835 -34.35601 -34.12368 -33.13026 -31.07902 -29.17625 -28.73236 -28.43017 -27.33971 -24.88063 -24.30751 -23.25950 -22.35466 -21.27984 -20.87122 -19.51266 -18.78895 -18.32562 -18.01296 -17.35499 -17.20549 -16.77884 -16.21871 -15.90729 -15.34017 -15.26362 -15.09880 -14.73848 -14.45193 -14.31383 -14.25781 -14.01100 -13.95168 -13.69670 -13.41434 -13.24272 -13.05265 -12.98832 -12.86413 -12.73581 -12.33885 -12.27759 -12.15779 -12.10009 -11.45338 -11.35153 -11.13213 -10.95963 -10.59857 -10.32429 -10.28467 -9.74407 -8.18561 -6.35334 0.00475 0.37599 0.62156 0.77653 1.40901 1.43811 1.46020 1.53897 2.17317 2.29066 2.33612 2.52589 2.92648 3.11247 3.12508 3.26257 3.55063 3.62919 3.76752 3.97914 4.06218 4.26392 4.35262 4.44011 4.58099 4.61211 4.73986 4.74528 4.79524 4.87594 4.92997 4.96111 5.03251 5.08326 5.25163 5.40096 5.44363 5.58230 5.67328 5.87144 6.08402 6.69205 6.71925 6.97281 7.20200 7.26526 7.42501 8.87625 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.020219 B = 0.002680 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.489986 B =10444.856514 C =10763.416445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.033 4.033 3 C -0.213 4.213 4 C -0.026 4.026 5 C 0.197 3.803 6 N -0.352 5.352 7 N -0.081 5.081 8 N -0.224 5.224 9 C -0.128 4.128 10 C 0.589 3.411 11 O -0.573 6.573 12 N -0.695 5.695 13 C 0.272 3.728 14 H 0.010 0.990 15 C -0.133 4.133 16 C -0.553 4.553 17 H 0.064 0.936 18 C 0.019 3.981 19 N -0.913 5.913 20 Si 0.971 3.029 21 H -0.267 1.267 22 H -0.279 1.279 23 H -0.273 1.273 24 C 0.139 3.861 25 C -0.090 4.090 26 N -0.388 5.388 27 O 0.086 5.914 28 H 0.107 0.893 29 H 0.084 0.916 30 H 0.116 0.884 31 H 0.218 0.782 32 H 0.136 0.864 33 H 0.177 0.823 34 H 0.402 0.598 35 H 0.035 0.965 36 H 0.019 0.981 37 H 0.072 0.928 38 H 0.268 0.732 39 H 0.098 0.902 40 H 0.093 0.907 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.793 7.258 -22.942 30.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.096 4.096 3 C -0.234 4.234 4 C -0.185 4.185 5 C 0.077 3.923 6 N -0.138 5.138 7 N -0.060 5.060 8 N -0.098 5.098 9 C -0.267 4.267 10 C 0.374 3.626 11 O -0.454 6.454 12 N -0.342 5.342 13 C 0.170 3.830 14 H 0.028 0.972 15 C -0.192 4.192 16 C -0.591 4.591 17 H 0.082 0.918 18 C -0.181 4.181 19 N -0.551 5.551 20 Si 0.795 3.205 21 H -0.192 1.192 22 H -0.205 1.205 23 H -0.198 1.198 24 C 0.001 3.999 25 C -0.148 4.148 26 N -0.092 5.092 27 O 0.017 5.983 28 H 0.126 0.874 29 H 0.103 0.897 30 H 0.134 0.866 31 H 0.234 0.766 32 H 0.154 0.846 33 H 0.194 0.806 34 H 0.236 0.764 35 H 0.054 0.946 36 H 0.038 0.962 37 H 0.091 0.909 38 H 0.077 0.923 39 H 0.116 0.884 40 H 0.111 0.889 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -17.599 5.811 -23.168 29.669 hybrid contribution 0.088 -0.015 0.886 0.890 sum -17.511 5.796 -22.282 28.926 Atomic orbital electron populations 1.20607 0.80881 1.06057 1.05670 1.25460 0.98196 0.85270 1.00684 1.22828 0.88559 1.02979 1.09060 1.23897 0.98248 0.90405 1.05907 1.20699 0.83649 1.00385 0.87574 1.50420 1.29592 1.24011 1.09825 1.81895 1.04269 1.06115 1.13752 1.74583 1.19149 1.17409 0.98639 1.21367 1.06406 1.02023 0.96921 1.17112 0.79614 0.81742 0.84142 1.90673 1.54783 1.34281 1.65655 1.46219 1.39647 1.34595 1.13714 1.18452 0.93571 0.94888 0.76113 0.97236 1.21897 0.98338 0.96474 1.02448 1.21483 1.44527 0.96376 0.96733 0.91774 1.25729 0.95295 1.00043 0.97039 1.70020 1.47568 1.29374 1.08095 0.85421 0.78869 0.78903 0.77291 1.19205 1.20455 1.19832 1.22357 0.96049 0.97046 0.84445 1.20847 0.98293 0.91905 1.03794 1.74007 0.98033 1.17981 1.19190 1.84833 1.11209 1.35000 1.67210 0.87437 0.89672 0.86573 0.76557 0.84594 0.80594 0.76373 0.94633 0.96177 0.90902 0.92321 0.88403 0.88880 0.85673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.22 10.45 71.23 0.74 0.52 16 2 C -0.03 -0.39 7.49 25.04 0.19 -0.20 16 3 C -0.21 -2.05 11.05 22.40 0.25 -1.80 16 4 C -0.03 -0.44 6.91 43.58 0.30 -0.14 16 5 C 0.20 2.67 6.89 85.63 0.59 3.26 16 6 N -0.35 -8.85 3.62 -337.48 -1.22 -10.07 16 7 N -0.08 -2.77 13.78 37.02 0.51 -2.26 16 8 N -0.22 -8.75 12.04 -49.99 -0.60 -9.35 16 9 C -0.13 -4.88 6.99 40.82 0.29 -4.59 16 10 C 0.59 26.65 7.78 86.69 0.67 27.33 16 11 O -0.57 -27.68 14.39 -4.00 -0.06 -27.74 16 12 N -0.69 -33.54 5.07 -449.27 -2.28 -35.82 16 13 C 0.27 15.01 2.56 44.25 0.11 15.12 16 14 H 0.01 0.61 7.58 -2.39 -0.02 0.59 16 15 C -0.13 -7.00 9.26 71.98 0.67 -6.33 16 16 C -0.55 -31.35 8.73 25.60 0.22 -31.13 16 17 H 0.06 3.52 7.74 -2.91 -0.02 3.50 16 18 C 0.02 1.09 5.30 84.65 0.45 1.54 16 19 N -0.91 -53.20 11.32 21.45 0.24 -52.96 16 20 Si 0.97 43.98 29.54 68.60 2.03 46.01 16 21 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 22 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 23 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 24 C 0.14 3.94 7.02 41.72 0.29 4.23 16 25 C -0.09 -1.76 9.56 71.24 0.68 -1.08 16 26 N -0.39 -9.73 12.07 -49.56 -0.60 -10.32 16 27 O 0.09 1.82 11.20 71.69 0.80 2.63 16 28 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16 29 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.12 -0.13 8.14 -2.38 -0.02 -0.15 16 31 H 0.22 0.10 8.06 -2.91 -0.02 0.07 16 32 H 0.14 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.18 0.51 7.14 -2.39 -0.02 0.49 16 34 H 0.40 18.42 8.22 -92.71 -0.76 17.65 16 35 H 0.03 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.07 4.11 6.07 -2.39 -0.01 4.10 16 38 H 0.27 14.68 8.31 -92.70 -0.77 13.91 16 39 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.09 2.37 6.44 -2.39 -0.02 2.35 16 41 H 0.12 1.03 7.18 -2.39 -0.02 1.02 16 Total: -1.00 -82.02 358.07 4.61 -77.41 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: 0.32 Total: 15.76 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: 5.46 Total: 6.72 kcal Atomic # 7 Polarization: -116.84 SS G_CDS: -3.94 Total: -120.79 kcal Atomic # 8 Polarization: -25.86 SS G_CDS: 0.75 Total: -25.11 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -82.02 4.61 -77.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361818151.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.974 kcal (2) G-P(sol) polarization free energy of solvation -82.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds