Wall clock time and date at job start Tue Mar 31 2020 12:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30865 * 125.89565 * 2 1 4 4 C 1.33633 * 109.77556 * 179.97438 * 3 2 1 5 5 N 1.39886 * 125.60224 * 179.97438 * 4 3 2 6 6 C 1.34771 * 119.99829 * 179.97438 * 5 4 3 7 7 O 1.21585 * 120.00258 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99776 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00200 * 179.97438 * 8 6 5 10 10 C 1.50708 * 109.47208 * 90.00042 * 9 8 6 11 11 H 1.08003 * 119.99361 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00085 * 180.02562 * 10 9 8 13 13 N 1.31512 * 119.99975 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 119.99897 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47335 * 89.99605 * 14 12 10 16 16 H 1.48495 * 109.47075 * 210.00279 * 14 12 10 17 17 H 1.48507 * 109.47106 * 330.00134 * 14 12 10 18 18 C 1.46504 * 120.00284 * 0.02562 * 8 6 5 19 19 C 1.50703 * 109.47055 * 89.99727 * 18 8 6 20 20 C 1.34511 * 125.79215 * 90.00022 * 19 18 8 21 21 C 1.41382 * 106.84272 * 180.02562 * 20 19 18 22 22 C 1.34512 * 106.83918 * 359.97438 * 21 20 19 23 23 O 1.34301 * 125.78598 * 269.69516 * 19 18 8 24 24 N 1.31165 * 108.79438 * 359.75489 * 4 3 2 25 25 N 1.34364 * 125.90302 * 179.97438 * 2 1 3 26 26 C 1.46506 * 126.76300 * 359.97438 * 25 2 1 27 27 H 1.09000 * 109.47352 * 270.02951 * 1 2 3 28 28 H 1.08996 * 109.47088 * 30.03226 * 1 2 3 29 29 H 1.09004 * 109.46398 * 150.02937 * 1 2 3 30 30 H 0.97006 * 119.99778 * 359.97438 * 5 4 3 31 31 H 1.08995 * 109.47987 * 210.00450 * 9 8 6 32 32 H 1.09006 * 109.47271 * 330.00674 * 9 8 6 33 33 H 0.97004 * 120.00058 * 180.02562 * 13 12 10 34 34 H 1.08998 * 109.46860 * 209.99478 * 18 8 6 35 35 H 1.08999 * 109.47063 * 329.99959 * 18 8 6 36 36 H 1.08004 * 126.57389 * 359.96727 * 20 19 18 37 37 H 1.08003 * 126.57897 * 179.97438 * 21 20 19 38 38 H 1.07996 * 125.78939 * 179.97438 * 22 21 20 39 39 H 1.09001 * 109.47060 * 90.00410 * 26 25 2 40 40 H 1.09004 * 109.47073 * 209.99899 * 26 25 2 41 41 H 1.09000 * 109.47212 * 329.99982 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2743 1.0601 0.0000 4 6 3.5581 0.6891 0.0006 5 7 4.6562 1.5556 0.0002 6 6 5.9082 1.0568 0.0014 7 8 6.0833 -0.1464 0.0023 8 7 6.9662 1.8917 0.0005 9 6 8.3272 1.3496 0.0024 10 6 8.7948 1.1611 -1.4179 11 1 8.1434 1.4198 -2.2396 12 6 10.0541 0.6585 -1.6681 13 7 10.8470 0.3431 -0.6674 14 14 10.6339 0.4256 -3.4285 15 1 11.3062 1.6643 -3.8962 16 1 11.5895 -0.7094 -3.4888 17 1 9.4667 0.1367 -4.3000 18 6 6.7554 3.3415 -0.0011 19 6 6.6829 3.8402 1.4192 20 6 7.7248 4.2575 2.1606 21 6 7.2062 4.6333 3.4210 22 6 5.8784 4.4237 3.3743 23 8 5.5663 3.9486 2.1575 24 7 3.6193 -0.6211 0.0062 25 7 2.2950 -1.0884 0.0005 26 6 1.8585 -2.4869 0.0016 27 1 -0.3634 0.0005 1.0276 28 1 -0.3633 0.8897 -0.5143 29 1 -0.3632 -0.8903 -0.5134 30 1 4.5165 2.5156 -0.0008 31 1 8.9939 2.0427 0.5154 32 1 8.3351 0.3891 0.5179 33 1 11.7331 -0.0102 -0.8435 34 1 7.5839 3.8285 -0.5153 35 1 5.8224 3.5724 -0.5152 36 1 8.7592 4.2969 1.8523 37 1 7.7684 5.0154 4.2603 38 1 5.1810 4.6095 4.1777 39 1 1.7499 -2.8345 -1.0258 40 1 2.6000 -3.0985 0.5156 41 1 0.9008 -2.5682 0.5159 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001425783417.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:53 Heat of formation + Delta-G solvation = 105.745926 kcal Electronic energy + Delta-G solvation = -26791.667314 eV Core-core repulsion = 22904.940916 eV Total energy + Delta-G solvation = -3886.726398 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.143 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.30911 -41.95676 -39.47671 -35.54730 -34.80453 -33.18571 -32.76267 -32.57643 -32.01487 -30.15254 -28.48802 -27.53857 -26.30800 -25.40481 -23.38116 -21.53924 -21.38576 -20.80488 -20.44422 -18.95051 -17.95789 -17.36638 -16.85063 -16.31543 -16.17637 -15.87460 -15.58845 -14.83394 -14.77968 -14.16324 -14.10062 -13.94095 -13.56913 -13.38525 -13.26029 -12.91520 -12.67301 -12.59080 -12.57529 -12.47497 -12.15883 -11.62358 -11.42309 -11.22598 -10.93083 -10.58916 -10.49874 -10.16063 -9.84470 -9.71185 -9.63661 -9.53253 -9.31782 -8.42248 -8.36784 -8.28141 -7.77963 -6.02882 -4.07487 1.78243 1.90498 2.29995 2.81654 2.96773 3.03144 3.22367 3.32146 3.39136 3.44466 4.03520 4.16842 4.34331 4.46835 4.55619 4.90374 4.93884 5.05356 5.13312 5.19143 5.27942 5.30900 5.32043 5.45273 5.47624 5.51355 5.75597 5.84826 6.02611 6.19892 6.30833 6.47817 6.58917 6.74161 6.88178 7.09051 7.28450 7.34899 7.47746 7.56877 7.93926 8.20494 8.24045 8.61559 8.93338 9.21058 9.57704 11.05183 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.009181 B = 0.004785 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3049.195718 B = 5850.536216 C = 8327.748290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.282 3.718 3 N -0.560 5.560 4 C 0.465 3.535 5 N -0.641 5.641 6 C 0.701 3.299 7 O -0.531 6.531 8 N -0.600 5.600 9 C 0.262 3.738 10 C -0.528 4.528 11 H 0.059 0.941 12 C 0.063 3.937 13 N -0.894 5.894 14 Si 0.898 3.102 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.274 1.274 18 C 0.191 3.809 19 C -0.032 4.032 20 C -0.189 4.189 21 C -0.214 4.214 22 C -0.047 4.047 23 O -0.176 6.176 24 N -0.286 5.286 25 N -0.388 5.388 26 C 0.101 3.899 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.081 0.919 30 H 0.414 0.586 31 H 0.038 0.962 32 H 0.046 0.954 33 H 0.263 0.737 34 H 0.123 0.877 35 H 0.077 0.923 36 H 0.151 0.849 37 H 0.145 0.855 38 H 0.197 0.803 39 H 0.077 0.923 40 H 0.093 0.907 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.365 4.554 5.083 20.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.005 3.995 3 N -0.294 5.294 4 C 0.094 3.906 5 N -0.300 5.300 6 C 0.402 3.598 7 O -0.402 6.402 8 N -0.335 5.335 9 C 0.144 3.856 10 C -0.567 4.567 11 H 0.077 0.923 12 C -0.139 4.139 13 N -0.532 5.532 14 Si 0.726 3.274 15 H -0.206 1.206 16 H -0.211 1.211 17 H -0.199 1.199 18 C 0.066 3.934 19 C -0.084 4.084 20 C -0.210 4.210 21 C -0.234 4.234 22 C -0.115 4.115 23 O -0.072 6.072 24 N -0.121 5.121 25 N -0.180 5.180 26 C -0.042 4.042 27 H 0.107 0.893 28 H 0.114 0.886 29 H 0.100 0.900 30 H 0.252 0.748 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.141 0.859 35 H 0.096 0.904 36 H 0.169 0.831 37 H 0.163 0.837 38 H 0.214 0.786 39 H 0.096 0.904 40 H 0.112 0.888 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -18.639 3.326 5.007 19.584 hybrid contribution 0.432 0.374 -0.638 0.856 sum -18.207 3.700 4.369 19.086 Atomic orbital electron populations 1.20337 0.83914 1.04717 1.04213 1.24075 0.96270 0.82299 0.96857 1.70071 0.99929 1.29692 1.29739 1.20001 0.85990 0.87152 0.97456 1.42034 1.01778 1.08581 1.77602 1.15811 0.79267 0.85949 0.78817 1.91016 1.82883 1.12203 1.54055 1.47637 1.07419 1.03047 1.75403 1.19313 0.73194 0.95489 0.97615 1.21454 0.99627 1.43384 0.92248 0.92274 1.24905 0.96509 0.95112 0.97388 1.69934 1.08908 1.43724 1.30671 0.86494 0.78524 0.77704 0.84687 1.20623 1.21132 1.19916 1.19867 1.03838 0.83131 0.86608 1.23307 0.84194 1.04460 0.96436 1.21686 1.00181 1.05027 0.94060 1.21822 0.94636 1.07590 0.99303 1.23927 0.97050 1.03580 0.86932 1.84006 1.35103 1.65380 1.22738 1.79036 0.93485 1.09114 1.30465 1.50278 1.04187 1.07519 1.56058 1.21853 1.01029 0.77680 1.03607 0.89252 0.88579 0.90006 0.74784 0.94412 0.93550 0.92703 0.85928 0.90448 0.83129 0.83745 0.78608 0.90434 0.88836 0.89371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.49 10.00 36.01 0.36 -0.13 16 2 C 0.28 3.75 7.98 -155.72 -1.24 2.51 16 3 N -0.56 -9.44 11.21 -11.07 -0.12 -9.56 16 4 C 0.46 9.26 8.83 -320.83 -2.83 6.43 16 5 N -0.64 -12.64 5.30 -17.22 -0.09 -12.73 16 6 C 0.70 16.40 8.24 -86.92 -0.72 15.69 16 7 O -0.53 -14.79 14.61 5.29 0.08 -14.72 16 8 N -0.60 -13.19 2.44 -182.18 -0.44 -13.64 16 9 C 0.26 6.88 5.16 -5.19 -0.03 6.86 16 10 C -0.53 -14.91 9.39 -34.44 -0.32 -15.23 16 11 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 12 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 13 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 14 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 15 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 17 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 18 C 0.19 3.21 5.70 -5.19 -0.03 3.18 16 19 C -0.03 -0.53 6.90 -35.62 -0.25 -0.78 16 20 C -0.19 -3.01 10.81 -39.70 -0.43 -3.44 16 21 C -0.21 -2.95 10.91 -39.70 -0.43 -3.38 16 22 C -0.05 -0.62 12.09 29.42 0.36 -0.26 16 23 O -0.18 -2.76 10.65 5.70 0.06 -2.70 16 24 N -0.29 -5.94 10.88 30.04 0.33 -5.61 16 25 N -0.39 -5.72 4.03 -65.10 -0.26 -5.98 16 26 C 0.10 0.91 11.15 59.85 0.67 1.57 16 27 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.34 7.75 -51.93 -0.40 -0.06 16 30 H 0.41 6.95 6.55 -40.82 -0.27 6.68 16 31 H 0.04 0.98 8.07 -51.93 -0.42 0.56 16 32 H 0.05 1.40 7.42 -51.93 -0.39 1.01 16 33 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 34 H 0.12 1.94 8.07 -51.93 -0.42 1.52 16 35 H 0.08 1.10 6.36 -51.93 -0.33 0.77 16 36 H 0.15 2.34 8.06 -52.48 -0.42 1.91 16 37 H 0.14 1.62 8.06 -52.48 -0.42 1.20 16 38 H 0.20 1.77 8.06 -52.49 -0.42 1.35 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.09 0.43 7.70 -51.93 -0.40 0.03 16 LS Contribution 360.67 15.07 5.44 5.44 Total: -1.00 -39.13 360.67 -9.43 -48.56 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -5.13 Total: 5.04 kcal Atomic # 6 Polarization: 19.70 SS G_CDS: -4.99 Total: 14.71 kcal Atomic # 7 Polarization: -73.41 SS G_CDS: 0.14 Total: -73.27 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: 0.14 Total: -17.42 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -39.13 -9.43 -48.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001425783417.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.303 kcal (2) G-P(sol) polarization free energy of solvation -39.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds