Wall clock time and date at job start Tue Mar 31 2020 12:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30865 * 125.89565 * 2 1 4 4 C 1.33633 * 109.77556 * 179.97438 * 3 2 1 5 5 N 1.39886 * 125.60224 * 179.97438 * 4 3 2 6 6 C 1.34771 * 119.99829 * 179.97438 * 5 4 3 7 7 O 1.21585 * 120.00258 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99776 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00200 * 179.97438 * 8 6 5 10 10 C 1.50708 * 109.47208 * 90.00042 * 9 8 6 11 11 H 1.08003 * 119.99361 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00085 * 180.02562 * 10 9 8 13 13 N 1.31512 * 119.99975 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 119.99897 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47335 * 89.99605 * 14 12 10 16 16 H 1.48495 * 109.47075 * 210.00279 * 14 12 10 17 17 H 1.48507 * 109.47106 * 330.00134 * 14 12 10 18 18 C 1.46504 * 120.00284 * 0.02562 * 8 6 5 19 19 C 1.50703 * 109.47055 * 89.99727 * 18 8 6 20 20 C 1.34511 * 125.79215 * 90.00022 * 19 18 8 21 21 C 1.41382 * 106.84272 * 180.02562 * 20 19 18 22 22 C 1.34512 * 106.83918 * 359.97438 * 21 20 19 23 23 O 1.34301 * 125.78598 * 269.69516 * 19 18 8 24 24 N 1.31165 * 108.79438 * 359.75489 * 4 3 2 25 25 N 1.34364 * 125.90302 * 179.97438 * 2 1 3 26 26 C 1.46506 * 126.76300 * 359.97438 * 25 2 1 27 27 H 1.09000 * 109.47352 * 270.02951 * 1 2 3 28 28 H 1.08996 * 109.47088 * 30.03226 * 1 2 3 29 29 H 1.09004 * 109.46398 * 150.02937 * 1 2 3 30 30 H 0.97006 * 119.99778 * 359.97438 * 5 4 3 31 31 H 1.08995 * 109.47987 * 210.00450 * 9 8 6 32 32 H 1.09006 * 109.47271 * 330.00674 * 9 8 6 33 33 H 0.97004 * 120.00058 * 180.02562 * 13 12 10 34 34 H 1.08998 * 109.46860 * 209.99478 * 18 8 6 35 35 H 1.08999 * 109.47063 * 329.99959 * 18 8 6 36 36 H 1.08004 * 126.57389 * 359.96727 * 20 19 18 37 37 H 1.08003 * 126.57897 * 179.97438 * 21 20 19 38 38 H 1.07996 * 125.78939 * 179.97438 * 22 21 20 39 39 H 1.09001 * 109.47060 * 90.00410 * 26 25 2 40 40 H 1.09004 * 109.47073 * 209.99899 * 26 25 2 41 41 H 1.09000 * 109.47212 * 329.99982 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2743 1.0601 0.0000 4 6 3.5581 0.6891 0.0006 5 7 4.6562 1.5556 0.0002 6 6 5.9082 1.0568 0.0014 7 8 6.0833 -0.1464 0.0023 8 7 6.9662 1.8917 0.0005 9 6 8.3272 1.3496 0.0024 10 6 8.7948 1.1611 -1.4179 11 1 8.1434 1.4198 -2.2396 12 6 10.0541 0.6585 -1.6681 13 7 10.8470 0.3431 -0.6674 14 14 10.6339 0.4256 -3.4285 15 1 11.3062 1.6643 -3.8962 16 1 11.5895 -0.7094 -3.4888 17 1 9.4667 0.1367 -4.3000 18 6 6.7554 3.3415 -0.0011 19 6 6.6829 3.8402 1.4192 20 6 7.7248 4.2575 2.1606 21 6 7.2062 4.6333 3.4210 22 6 5.8784 4.4237 3.3743 23 8 5.5663 3.9486 2.1575 24 7 3.6193 -0.6211 0.0062 25 7 2.2950 -1.0884 0.0005 26 6 1.8585 -2.4869 0.0016 27 1 -0.3634 0.0005 1.0276 28 1 -0.3633 0.8897 -0.5143 29 1 -0.3632 -0.8903 -0.5134 30 1 4.5165 2.5156 -0.0008 31 1 8.9939 2.0427 0.5154 32 1 8.3351 0.3891 0.5179 33 1 11.7331 -0.0102 -0.8435 34 1 7.5839 3.8285 -0.5153 35 1 5.8224 3.5724 -0.5152 36 1 8.7592 4.2969 1.8523 37 1 7.7684 5.0154 4.2603 38 1 5.1810 4.6095 4.1777 39 1 1.7499 -2.8345 -1.0258 40 1 2.6000 -3.0985 0.5156 41 1 0.9008 -2.5682 0.5159 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001425783417.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:52 Heat of formation + Delta-G solvation = 80.464758 kcal Electronic energy + Delta-G solvation = -26792.763588 eV Core-core repulsion = 22904.940916 eV Total energy + Delta-G solvation = -3887.822672 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.143 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.49051 -43.17751 -41.19987 -37.19901 -36.39935 -34.91128 -34.18460 -33.85814 -33.17876 -31.59880 -29.44203 -29.36272 -27.38362 -26.83191 -25.27944 -23.00102 -22.66097 -22.03919 -21.65500 -20.43821 -19.42993 -18.86941 -18.49475 -17.94757 -17.38687 -17.20916 -16.85937 -16.58838 -16.35887 -15.79789 -15.46397 -15.12260 -14.78073 -14.51402 -14.20887 -14.17514 -14.01792 -13.75458 -13.73183 -13.57984 -13.30766 -13.17621 -13.06783 -12.77855 -12.56625 -12.49485 -12.22678 -11.89446 -11.71624 -11.35800 -10.99076 -10.83060 -10.74512 -10.62362 -9.94518 -9.55949 -9.39684 -8.21508 -6.35400 0.63041 0.67022 1.06500 1.37802 1.41026 1.50973 1.56287 1.65341 1.79879 2.05628 2.34038 2.44397 2.77718 3.09282 3.31199 3.61338 3.72224 3.96720 4.15834 4.24192 4.33478 4.39387 4.42419 4.49933 4.66105 4.70836 4.76377 4.85653 4.91294 5.03668 5.07490 5.17337 5.18850 5.27827 5.43941 5.57086 5.61880 5.65490 5.81043 6.01314 6.04491 6.21222 6.65303 6.72127 7.18998 7.30440 7.47318 8.86139 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.009181 B = 0.004785 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3049.195718 B = 5850.536216 C = 8327.748290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.293 3.707 3 N -0.580 5.580 4 C 0.442 3.558 5 N -0.628 5.628 6 C 0.700 3.300 7 O -0.586 6.586 8 N -0.601 5.601 9 C 0.283 3.717 10 C -0.543 4.543 11 H 0.055 0.945 12 C 0.013 3.987 13 N -0.926 5.926 14 Si 0.967 3.033 15 H -0.260 1.260 16 H -0.282 1.282 17 H -0.277 1.277 18 C 0.189 3.811 19 C -0.054 4.054 20 C -0.201 4.201 21 C -0.226 4.226 22 C -0.036 4.036 23 O -0.187 6.187 24 N -0.349 5.349 25 N -0.389 5.389 26 C 0.089 3.911 27 H 0.114 0.886 28 H 0.105 0.895 29 H 0.116 0.884 30 H 0.426 0.574 31 H 0.036 0.964 32 H -0.003 1.003 33 H 0.267 0.733 34 H 0.130 0.870 35 H 0.104 0.896 36 H 0.146 0.854 37 H 0.170 0.830 38 H 0.240 0.760 39 H 0.093 0.907 40 H 0.079 0.921 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.090 5.392 4.958 23.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.017 3.983 3 N -0.315 5.315 4 C 0.071 3.929 5 N -0.286 5.286 6 C 0.400 3.600 7 O -0.461 6.461 8 N -0.335 5.335 9 C 0.163 3.837 10 C -0.582 4.582 11 H 0.073 0.927 12 C -0.187 4.187 13 N -0.565 5.565 14 Si 0.792 3.208 15 H -0.185 1.185 16 H -0.207 1.207 17 H -0.202 1.202 18 C 0.066 3.934 19 C -0.105 4.105 20 C -0.221 4.221 21 C -0.245 4.245 22 C -0.103 4.103 23 O -0.083 6.083 24 N -0.185 5.185 25 N -0.181 5.181 26 C -0.051 4.051 27 H 0.132 0.868 28 H 0.123 0.877 29 H 0.134 0.866 30 H 0.266 0.734 31 H 0.054 0.946 32 H 0.015 0.985 33 H 0.076 0.924 34 H 0.148 0.852 35 H 0.122 0.878 36 H 0.164 0.836 37 H 0.188 0.812 38 H 0.256 0.744 39 H 0.111 0.889 40 H 0.098 0.902 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -21.425 4.210 4.885 22.375 hybrid contribution 1.118 0.076 -0.490 1.223 sum -20.307 4.286 4.395 21.215 Atomic orbital electron populations 1.20713 0.78819 1.06879 1.06384 1.25325 0.98453 0.80883 0.93610 1.70095 0.98658 1.31460 1.31251 1.20194 0.86877 0.87186 0.98606 1.41613 1.00845 1.09187 1.76985 1.15932 0.80349 0.85322 0.78360 1.90961 1.84000 1.14614 1.56522 1.47454 1.05719 1.05239 1.75110 1.18743 0.75430 0.93255 0.96293 1.21688 0.99951 1.43740 0.92809 0.92683 1.25786 0.96568 0.94521 1.01795 1.70051 1.09342 1.44239 1.32905 0.85425 0.77825 0.78390 0.79193 1.18461 1.20743 1.20215 1.20056 1.05510 0.79840 0.87961 1.23022 0.84816 1.06208 0.96450 1.21915 1.00015 1.04855 0.95302 1.22150 0.95241 1.07974 0.99166 1.24822 0.97827 1.01162 0.86500 1.83995 1.34870 1.65750 1.23731 1.78847 0.97828 1.10057 1.31781 1.50522 1.02400 1.09718 1.55487 1.22343 1.02741 0.74771 1.05264 0.86772 0.87679 0.86558 0.73357 0.94608 0.98517 0.92371 0.85213 0.87781 0.83577 0.81249 0.74391 0.88853 0.90189 0.84333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.64 10.00 71.24 0.71 0.07 16 2 C 0.29 7.21 7.98 138.24 1.10 8.31 16 3 N -0.58 -19.17 11.21 -188.92 -2.12 -21.29 16 4 C 0.44 18.07 8.83 260.79 2.30 20.37 16 5 N -0.63 -25.59 5.30 -326.67 -1.73 -27.32 16 6 C 0.70 34.49 8.24 179.06 1.48 35.96 16 7 O -0.59 -34.85 14.61 -3.98 -0.06 -34.91 16 8 N -0.60 -27.71 2.44 -848.55 -2.07 -29.78 16 9 C 0.28 15.73 5.16 85.64 0.44 16.17 16 10 C -0.54 -31.76 9.39 25.60 0.24 -31.52 16 11 H 0.05 3.19 7.81 -2.91 -0.02 3.17 16 12 C 0.01 0.73 5.46 84.65 0.46 1.20 16 13 N -0.93 -56.38 13.29 21.45 0.28 -56.10 16 14 Si 0.97 45.62 29.54 68.60 2.03 47.65 16 15 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 16 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 17 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 18 C 0.19 6.51 5.70 85.63 0.49 6.99 16 19 C -0.05 -1.78 6.90 24.83 0.17 -1.60 16 20 C -0.20 -6.40 10.81 22.19 0.24 -6.16 16 21 C -0.23 -5.91 10.91 22.19 0.24 -5.66 16 22 C -0.04 -0.87 12.09 66.97 0.81 -0.06 16 23 O -0.19 -5.70 10.65 -2.51 -0.03 -5.73 16 24 N -0.35 -14.98 10.88 -58.87 -0.64 -15.62 16 25 N -0.39 -11.13 4.03 -359.87 -1.45 -12.58 16 26 C 0.09 1.42 11.15 127.77 1.42 2.84 16 27 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.12 0.33 7.75 -2.38 -0.02 0.31 16 30 H 0.43 14.54 6.55 -92.70 -0.61 13.93 16 31 H 0.04 1.97 8.07 -2.39 -0.02 1.95 16 32 H 0.00 -0.21 7.42 -2.38 -0.02 -0.23 16 33 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 34 H 0.13 4.21 8.07 -2.39 -0.02 4.19 16 35 H 0.10 2.95 6.36 -2.39 -0.02 2.94 16 36 H 0.15 4.68 8.06 -2.91 -0.02 4.65 16 37 H 0.17 3.44 8.06 -2.91 -0.02 3.41 16 38 H 0.24 3.42 8.06 -2.91 -0.02 3.39 16 39 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 41 H 0.14 0.77 7.70 -2.39 -0.02 0.76 16 Total: -1.00 -91.84 360.67 4.79 -87.05 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: 0.46 Total: 21.71 kcal Atomic # 6 Polarization: 36.80 SS G_CDS: 10.11 Total: 46.92 kcal Atomic # 7 Polarization: -154.96 SS G_CDS: -7.73 Total: -162.68 kcal Atomic # 8 Polarization: -40.55 SS G_CDS: -0.08 Total: -40.63 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -91.84 4.79 -87.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001425783417.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.514 kcal (2) G-P(sol) polarization free energy of solvation -91.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds