Wall clock time and date at job start Tue Mar 31 2020 12:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35351 * 117.00270 * 2 1 4 4 C 1.38997 * 126.41095 * 95.31368 * 3 2 1 5 5 C 1.46906 * 126.49775 * 0.02562 * 4 3 2 6 6 O 1.21675 * 119.99993 * 0.02562 * 5 4 3 7 7 N 1.34779 * 120.00324 * 180.02562 * 5 4 3 8 8 C 1.40121 * 120.00030 * 180.02562 * 7 5 4 9 9 C 1.40415 * 125.97610 * 0.29853 * 8 7 5 10 10 C 1.35239 * 107.86581 * 180.18979 * 9 8 7 11 11 C 1.50703 * 126.06873 * 179.84949 * 10 9 8 12 12 N 1.34975 * 107.86270 * 359.58121 * 10 9 8 13 13 C 1.46494 * 125.97283 * 180.23043 * 12 10 9 14 14 C 1.50700 * 109.47009 * 90.00219 * 13 12 10 15 15 H 1.08002 * 120.00261 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99879 * 180.02562 * 14 13 12 17 17 N 1.31518 * 120.00210 * 180.02562 * 16 14 13 18 18 Si 1.86807 * 119.99976 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.46659 * 90.00539 * 18 16 14 20 20 H 1.48500 * 109.46975 * 210.00269 * 18 16 14 21 21 H 1.48497 * 109.46926 * 330.00345 * 18 16 14 22 22 N 1.31229 * 125.97273 * 180.02562 * 8 7 5 23 23 C 1.41463 * 107.00626 * 180.28392 * 4 3 2 24 24 N 1.30311 * 108.13805 * 359.55383 * 23 4 3 25 25 N 1.34669 * 126.40151 * 275.33474 * 3 2 1 26 26 C 1.46496 * 125.74239 * 359.96255 * 25 3 2 27 27 H 1.08993 * 109.46852 * 64.89963 * 1 2 3 28 28 H 1.08999 * 109.47199 * 184.90184 * 1 2 3 29 29 H 1.09004 * 109.47113 * 304.90241 * 1 2 3 30 30 H 0.97004 * 119.99800 * 0.02562 * 7 5 4 31 31 H 1.07993 * 126.06586 * 0.02749 * 9 8 7 32 32 H 1.09001 * 109.46784 * 269.68681 * 11 10 9 33 33 H 1.08997 * 109.46876 * 149.68839 * 11 10 9 34 34 H 1.08996 * 109.46824 * 29.68322 * 11 10 9 35 35 H 1.09006 * 109.46982 * 210.00059 * 13 12 10 36 36 H 1.08996 * 109.47398 * 330.00113 * 13 12 10 37 37 H 0.96995 * 120.00093 * 179.97438 * 17 16 14 38 38 H 1.08006 * 125.93309 * 179.69839 * 23 4 3 39 39 H 1.09002 * 109.47522 * 94.33668 * 26 25 3 40 40 H 1.08999 * 109.46868 * 214.33521 * 26 25 3 41 41 H 1.08997 * 109.47626 * 334.32964 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2060 0.0000 4 6 2.5104 1.8940 1.1138 5 6 2.4307 1.4501 2.5119 6 8 1.9155 0.3815 2.7825 7 7 2.9282 2.2264 3.4949 8 6 2.8527 1.8026 4.8284 9 6 2.2937 0.5963 5.2802 10 6 2.4109 0.5635 6.6271 11 6 1.9414 -0.5466 7.5317 12 7 3.0284 1.6987 7.0167 13 6 3.3594 2.0687 8.3950 14 6 4.7342 1.5545 8.7367 15 1 5.3041 1.0065 8.0009 16 6 5.2639 1.7827 9.9890 17 7 6.4639 1.3345 10.2871 18 14 4.2779 2.7299 11.2619 19 1 3.4546 1.7824 12.0554 20 1 5.2052 3.4569 12.1657 21 1 3.3902 3.7031 10.5764 22 7 3.2964 2.4615 5.8729 23 6 3.0715 3.1056 0.6465 24 7 2.9562 3.1321 -0.6513 25 7 2.3166 1.9638 -1.0792 26 6 1.9978 1.6221 -2.4677 27 1 -0.3633 0.4359 -0.9306 28 1 -0.3633 -1.0239 0.0878 29 1 -0.3633 0.5880 0.8428 30 1 3.3386 3.0784 3.2793 31 1 1.8469 -0.1682 4.6620 32 1 0.9160 -0.3508 7.8451 33 1 2.5861 -0.5974 8.4092 34 1 1.9826 -1.4945 6.9952 35 1 3.3425 3.1541 8.4938 36 1 2.6284 1.6305 9.0744 37 1 6.8367 1.4954 11.1680 38 1 3.5199 3.8742 1.2587 39 1 1.0410 2.0670 -2.7409 40 1 2.7780 2.0063 -3.1247 41 1 1.9373 0.5386 -2.5706 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001435748714.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:18 Heat of formation + Delta-G solvation = 100.084056 kcal Electronic energy + Delta-G solvation = -26055.537611 eV Core-core repulsion = 22168.565696 eV Total energy + Delta-G solvation = -3886.971915 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.143 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.88512 -40.63767 -38.86418 -38.45288 -34.76357 -33.80972 -33.20089 -31.51654 -31.10229 -30.22644 -28.07033 -27.16073 -26.85393 -26.34762 -23.63266 -22.37084 -21.57859 -20.82585 -19.66855 -19.40044 -18.23236 -17.08612 -16.86793 -16.68605 -16.25310 -15.79315 -15.25578 -15.08147 -14.96952 -14.89979 -14.36392 -14.00351 -13.92502 -13.71253 -13.23240 -13.07227 -13.04289 -12.54684 -12.36834 -12.29162 -12.24215 -11.97265 -11.63397 -11.51855 -11.14344 -10.78659 -10.60440 -10.52209 -9.93878 -9.90013 -9.81914 -9.56384 -9.51784 -8.97857 -8.76284 -7.93619 -7.41383 -6.23878 -4.26919 0.91415 1.73806 1.82586 2.67602 2.83175 3.08872 3.16615 3.25039 3.25680 3.29592 3.80364 3.88278 4.09266 4.23675 4.59526 4.64837 4.67732 4.76190 4.91596 4.93226 4.99696 5.04332 5.22957 5.29137 5.48725 5.67611 5.71323 5.91827 6.01929 6.06221 6.26632 6.41383 6.50366 6.61475 6.65807 6.80791 6.98927 7.13093 7.31672 7.46398 7.68075 7.90375 8.34109 8.37915 8.63108 8.82439 9.31366 10.88646 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.027172 B = 0.002633 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.221640 B =10633.129020 C =11238.635813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.295 6.295 3 C 0.325 3.675 4 C -0.291 4.291 5 C 0.602 3.398 6 O -0.514 6.514 7 N -0.627 5.627 8 C 0.272 3.728 9 C -0.285 4.285 10 C 0.093 3.907 11 C -0.090 4.090 12 N -0.318 5.318 13 C 0.232 3.768 14 C -0.540 4.540 15 H 0.081 0.919 16 C 0.079 3.921 17 N -0.887 5.887 18 Si 0.872 3.128 19 H -0.271 1.271 20 H -0.280 1.280 21 H -0.263 1.263 22 N -0.318 5.318 23 C 0.094 3.906 24 N -0.277 5.277 25 N -0.371 5.371 26 C 0.093 3.907 27 H 0.046 0.954 28 H 0.108 0.892 29 H 0.061 0.939 30 H 0.409 0.591 31 H 0.162 0.838 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.050 0.950 36 H 0.045 0.955 37 H 0.268 0.732 38 H 0.198 0.802 39 H 0.079 0.921 40 H 0.096 0.904 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.519 0.185 -22.696 26.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.203 6.203 3 C 0.152 3.848 4 C -0.307 4.307 5 C 0.388 3.612 6 O -0.389 6.389 7 N -0.274 5.274 8 C 0.019 3.981 9 C -0.316 4.316 10 C -0.037 4.037 11 C -0.149 4.149 12 N -0.100 5.100 13 C 0.113 3.887 14 C -0.579 4.579 15 H 0.099 0.901 16 C -0.125 4.125 17 N -0.524 5.524 18 Si 0.698 3.302 19 H -0.196 1.196 20 H -0.205 1.205 21 H -0.188 1.188 22 N -0.149 5.149 23 C -0.093 4.093 24 N -0.100 5.100 25 N -0.161 5.161 26 C -0.048 4.048 27 H 0.065 0.935 28 H 0.126 0.874 29 H 0.080 0.920 30 H 0.244 0.756 31 H 0.179 0.821 32 H 0.089 0.911 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.079 0.921 38 H 0.215 0.785 39 H 0.098 0.902 40 H 0.115 0.885 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.901 0.858 -23.024 26.406 hybrid contribution -0.621 -0.037 0.957 1.141 sum -13.523 0.822 -22.067 25.894 Atomic orbital electron populations 1.23155 0.76550 1.04845 1.01024 1.86046 1.21425 1.20051 1.92808 1.19262 0.94846 0.84428 0.86297 1.19830 1.19138 0.98918 0.92775 1.16809 0.77939 0.83560 0.82846 1.90746 1.43589 1.21653 1.82910 1.42159 1.59695 1.23016 1.02555 1.18918 1.00331 0.94553 0.84262 1.21278 1.16392 1.01085 0.92853 1.21058 0.97641 0.90396 0.94644 1.20399 1.01055 0.94594 0.98814 1.48496 1.42242 1.13008 1.06247 1.19976 0.97853 0.97956 0.72921 1.21197 0.99183 1.37393 1.00099 0.90071 1.24814 0.94879 0.95024 0.97830 1.69876 1.15624 1.45026 1.21852 0.86908 0.80498 0.80824 0.81948 1.19636 1.20534 1.18773 1.77257 1.26919 1.19941 0.90755 1.24011 0.96925 0.96414 0.91980 1.77240 1.18188 1.01163 1.13366 1.48971 1.45453 1.14547 1.07087 1.22009 1.02809 1.02503 0.77468 0.93545 0.87361 0.92007 0.75605 0.82095 0.91141 0.89882 0.90373 0.93229 0.93704 0.92143 0.78488 0.90238 0.88531 0.88818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 11.13 101.05 1.12 1.42 16 2 O -0.29 -3.36 9.74 -24.99 -0.24 -3.60 16 3 C 0.33 3.82 6.98 -16.03 -0.11 3.71 16 4 C -0.29 -3.71 6.15 -104.88 -0.64 -4.35 16 5 C 0.60 9.46 7.76 -12.75 -0.10 9.36 16 6 O -0.51 -9.45 13.50 -2.04 -0.03 -9.48 16 7 N -0.63 -10.03 5.44 -12.25 -0.07 -10.10 16 8 C 0.27 5.56 8.11 -154.41 -1.25 4.31 16 9 C -0.29 -5.87 9.52 -39.83 -0.38 -6.25 16 10 C 0.09 1.95 6.92 -82.28 -0.57 1.38 16 11 C -0.09 -1.51 9.89 36.01 0.36 -1.16 16 12 N -0.32 -7.42 3.59 -58.33 -0.21 -7.63 16 13 C 0.23 5.60 4.88 -5.20 -0.03 5.58 16 14 C -0.54 -15.20 9.94 -34.44 -0.34 -15.54 16 15 H 0.08 2.59 8.06 -52.49 -0.42 2.17 16 16 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 17 N -0.89 -26.46 13.96 55.43 0.77 -25.68 16 18 Si 0.87 20.16 27.47 -169.99 -4.67 15.49 16 19 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.26 -5.82 6.54 56.52 0.37 -5.45 16 22 N -0.32 -7.28 12.59 31.43 0.40 -6.89 16 23 C 0.09 0.97 11.50 -16.97 -0.20 0.77 16 24 N -0.28 -3.00 12.47 30.88 0.39 -2.61 16 25 N -0.37 -3.63 3.99 -67.67 -0.27 -3.90 16 26 C 0.09 0.48 11.41 59.84 0.68 1.16 16 27 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.41 5.18 7.77 -40.82 -0.32 4.87 16 31 H 0.16 3.23 5.91 -52.49 -0.31 2.92 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.08 1.49 7.71 -51.93 -0.40 1.09 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.05 1.20 7.20 -51.93 -0.37 0.83 16 36 H 0.05 0.99 7.07 -51.93 -0.37 0.63 16 37 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.20 1.36 7.50 -52.48 -0.39 0.96 16 39 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.09 0.37 8.03 -51.93 -0.42 -0.05 16 LS Contribution 357.72 15.07 5.39 5.39 Total: -1.00 -36.65 357.72 -5.22 -41.87 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -5.13 Total: 4.64 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: -1.55 Total: 2.50 kcal Atomic # 7 Polarization: -57.82 SS G_CDS: 1.01 Total: -56.82 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: -0.27 Total: -13.08 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -4.67 Total: 15.49 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -36.65 -5.22 -41.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001435748714.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.958 kcal (2) G-P(sol) polarization free energy of solvation -36.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds