Wall clock time and date at job start Tue Mar 31 2020 12:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35351 * 117.00270 * 2 1 4 4 C 1.38997 * 126.41095 * 95.31368 * 3 2 1 5 5 C 1.46906 * 126.49775 * 0.02562 * 4 3 2 6 6 O 1.21675 * 119.99993 * 0.02562 * 5 4 3 7 7 N 1.34779 * 120.00324 * 180.02562 * 5 4 3 8 8 C 1.40121 * 120.00030 * 180.02562 * 7 5 4 9 9 C 1.40415 * 125.97610 * 0.29853 * 8 7 5 10 10 C 1.35239 * 107.86581 * 180.18979 * 9 8 7 11 11 C 1.50703 * 126.06873 * 179.84949 * 10 9 8 12 12 N 1.34975 * 107.86270 * 359.58121 * 10 9 8 13 13 C 1.46494 * 125.97283 * 180.23043 * 12 10 9 14 14 C 1.50700 * 109.47009 * 90.00219 * 13 12 10 15 15 H 1.08002 * 120.00261 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99879 * 180.02562 * 14 13 12 17 17 N 1.31518 * 120.00210 * 180.02562 * 16 14 13 18 18 Si 1.86807 * 119.99976 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.46659 * 90.00539 * 18 16 14 20 20 H 1.48500 * 109.46975 * 210.00269 * 18 16 14 21 21 H 1.48497 * 109.46926 * 330.00345 * 18 16 14 22 22 N 1.31229 * 125.97273 * 180.02562 * 8 7 5 23 23 C 1.41463 * 107.00626 * 180.28392 * 4 3 2 24 24 N 1.30311 * 108.13805 * 359.55383 * 23 4 3 25 25 N 1.34669 * 126.40151 * 275.33474 * 3 2 1 26 26 C 1.46496 * 125.74239 * 359.96255 * 25 3 2 27 27 H 1.08993 * 109.46852 * 64.89963 * 1 2 3 28 28 H 1.08999 * 109.47199 * 184.90184 * 1 2 3 29 29 H 1.09004 * 109.47113 * 304.90241 * 1 2 3 30 30 H 0.97004 * 119.99800 * 0.02562 * 7 5 4 31 31 H 1.07993 * 126.06586 * 0.02749 * 9 8 7 32 32 H 1.09001 * 109.46784 * 269.68681 * 11 10 9 33 33 H 1.08997 * 109.46876 * 149.68839 * 11 10 9 34 34 H 1.08996 * 109.46824 * 29.68322 * 11 10 9 35 35 H 1.09006 * 109.46982 * 210.00059 * 13 12 10 36 36 H 1.08996 * 109.47398 * 330.00113 * 13 12 10 37 37 H 0.96995 * 120.00093 * 179.97438 * 17 16 14 38 38 H 1.08006 * 125.93309 * 179.69839 * 23 4 3 39 39 H 1.09002 * 109.47522 * 94.33668 * 26 25 3 40 40 H 1.08999 * 109.46868 * 214.33521 * 26 25 3 41 41 H 1.08997 * 109.47626 * 334.32964 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2060 0.0000 4 6 2.5104 1.8940 1.1138 5 6 2.4307 1.4501 2.5119 6 8 1.9155 0.3815 2.7825 7 7 2.9282 2.2264 3.4949 8 6 2.8527 1.8026 4.8284 9 6 2.2937 0.5963 5.2802 10 6 2.4109 0.5635 6.6271 11 6 1.9414 -0.5466 7.5317 12 7 3.0284 1.6987 7.0167 13 6 3.3594 2.0687 8.3950 14 6 4.7342 1.5545 8.7367 15 1 5.3041 1.0065 8.0009 16 6 5.2639 1.7827 9.9890 17 7 6.4639 1.3345 10.2871 18 14 4.2779 2.7299 11.2619 19 1 3.4546 1.7824 12.0554 20 1 5.2052 3.4569 12.1657 21 1 3.3902 3.7031 10.5764 22 7 3.2964 2.4615 5.8729 23 6 3.0715 3.1056 0.6465 24 7 2.9562 3.1321 -0.6513 25 7 2.3166 1.9638 -1.0792 26 6 1.9978 1.6221 -2.4677 27 1 -0.3633 0.4359 -0.9306 28 1 -0.3633 -1.0239 0.0878 29 1 -0.3633 0.5880 0.8428 30 1 3.3386 3.0784 3.2793 31 1 1.8469 -0.1682 4.6620 32 1 0.9160 -0.3508 7.8451 33 1 2.5861 -0.5974 8.4092 34 1 1.9826 -1.4945 6.9952 35 1 3.3425 3.1541 8.4938 36 1 2.6284 1.6305 9.0744 37 1 6.8367 1.4954 11.1680 38 1 3.5199 3.8742 1.2587 39 1 1.0410 2.0670 -2.7409 40 1 2.7780 2.0063 -3.1247 41 1 1.9373 0.5386 -2.5706 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001435748714.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:18 Heat of formation + Delta-G solvation = 72.746449 kcal Electronic energy + Delta-G solvation = -26056.723059 eV Core-core repulsion = 22168.565696 eV Total energy + Delta-G solvation = -3888.157363 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.143 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.75399 -42.19068 -40.18418 -39.24064 -36.27504 -35.23394 -34.44591 -33.15667 -32.77463 -31.14012 -29.25677 -28.30581 -27.85964 -27.70366 -25.00455 -23.95298 -22.57189 -21.87582 -21.14566 -20.74469 -19.21357 -19.19972 -17.89840 -17.62451 -17.54310 -17.12848 -16.51714 -16.48251 -16.05832 -15.84571 -15.67249 -15.31661 -14.99612 -14.88496 -14.67167 -14.41899 -13.85994 -13.73365 -13.70295 -13.59285 -13.54824 -13.21905 -12.92689 -12.81815 -12.53715 -12.44788 -12.24348 -11.82331 -11.54580 -11.39144 -11.34942 -10.89184 -10.86719 -10.54872 -9.90361 -9.55277 -9.04984 -8.38594 -6.49816 0.03046 0.84928 0.98568 1.15280 1.35596 1.36932 1.45226 1.51436 1.81394 2.28633 2.32669 2.43884 2.58566 2.93718 3.29414 3.70362 3.89375 3.97571 4.11800 4.18304 4.29082 4.31629 4.34903 4.45349 4.54399 4.57123 4.62657 4.69377 4.78880 4.83237 4.88112 5.01504 5.02917 5.14707 5.23970 5.25821 5.32267 5.89887 6.02538 6.20969 6.27419 6.36898 6.40205 6.54577 7.00562 7.14130 7.14980 8.78188 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.027172 B = 0.002633 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.221640 B =10633.129020 C =11238.635813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.313 6.313 3 C 0.327 3.673 4 C -0.319 4.319 5 C 0.603 3.397 6 O -0.545 6.545 7 N -0.619 5.619 8 C 0.279 3.721 9 C -0.298 4.298 10 C 0.090 3.910 11 C -0.088 4.088 12 N -0.343 5.343 13 C 0.242 3.758 14 C -0.550 4.550 15 H 0.023 0.977 16 C 0.021 3.979 17 N -0.938 5.938 18 Si 0.951 3.049 19 H -0.250 1.250 20 H -0.279 1.279 21 H -0.244 1.244 22 N -0.354 5.354 23 C 0.102 3.898 24 N -0.289 5.289 25 N -0.364 5.364 26 C 0.081 3.919 27 H 0.076 0.924 28 H 0.124 0.876 29 H 0.045 0.955 30 H 0.423 0.577 31 H 0.166 0.834 32 H 0.102 0.898 33 H 0.068 0.932 34 H 0.098 0.902 35 H 0.050 0.950 36 H 0.073 0.927 37 H 0.273 0.727 38 H 0.225 0.775 39 H 0.102 0.898 40 H 0.108 0.892 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.771 0.894 -23.600 28.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.222 6.222 3 C 0.151 3.849 4 C -0.335 4.335 5 C 0.393 3.607 6 O -0.422 6.422 7 N -0.268 5.268 8 C 0.024 3.976 9 C -0.328 4.328 10 C -0.040 4.040 11 C -0.146 4.146 12 N -0.126 5.126 13 C 0.122 3.878 14 C -0.589 4.589 15 H 0.041 0.959 16 C -0.179 4.179 17 N -0.577 5.577 18 Si 0.772 3.228 19 H -0.174 1.174 20 H -0.204 1.204 21 H -0.167 1.167 22 N -0.184 5.184 23 C -0.085 4.085 24 N -0.112 5.112 25 N -0.152 5.152 26 C -0.058 4.058 27 H 0.094 0.906 28 H 0.143 0.857 29 H 0.064 0.936 30 H 0.261 0.739 31 H 0.184 0.816 32 H 0.121 0.879 33 H 0.087 0.913 34 H 0.116 0.884 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.242 0.758 39 H 0.120 0.880 40 H 0.127 0.873 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -15.166 1.579 -24.001 28.435 hybrid contribution 0.095 -0.368 0.985 1.056 sum -15.071 1.211 -23.015 27.537 Atomic orbital electron populations 1.23379 0.74670 1.05981 1.01919 1.86006 1.23246 1.20009 1.92955 1.19355 0.94356 0.84389 0.86777 1.19660 1.21812 1.00725 0.91327 1.17248 0.76797 0.82930 0.83727 1.90709 1.45001 1.22999 1.83505 1.42228 1.59825 1.23837 1.00959 1.19247 0.98636 0.94203 0.85482 1.21454 1.16953 1.01438 0.92980 1.21758 0.96363 0.90348 0.95525 1.20543 1.02294 0.94108 0.97660 1.48433 1.43863 1.14212 1.06057 1.19768 0.95979 0.97795 0.74239 1.21267 1.00967 1.37318 0.99311 0.95898 1.25851 0.95955 0.95813 1.00263 1.70041 1.17957 1.46781 1.22909 0.85669 0.79018 0.79666 0.78423 1.17399 1.20415 1.16697 1.77171 1.28734 1.21199 0.91343 1.24412 0.96005 0.96017 0.92019 1.77227 1.18652 1.01845 1.13450 1.49298 1.44156 1.13649 1.08146 1.22436 1.04384 1.03766 0.75215 0.90576 0.85747 0.93587 0.73871 0.81626 0.87931 0.91346 0.88381 0.93193 0.90945 0.91749 0.75824 0.87997 0.87322 0.87493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.13 113.37 1.26 1.74 16 2 O -0.31 -6.80 9.74 -79.48 -0.77 -7.58 16 3 C 0.33 7.32 6.98 84.44 0.59 7.91 16 4 C -0.32 -7.93 6.15 -20.03 -0.12 -8.06 16 5 C 0.60 19.01 7.76 86.51 0.67 19.68 16 6 O -0.55 -20.25 13.50 2.66 0.04 -20.22 16 7 N -0.62 -19.88 5.44 -310.89 -1.69 -21.57 16 8 C 0.28 11.54 8.11 133.34 1.08 12.62 16 9 C -0.30 -12.34 9.52 22.11 0.21 -12.13 16 10 C 0.09 3.75 6.92 41.38 0.29 4.04 16 11 C -0.09 -2.84 9.89 71.24 0.70 -2.14 16 12 N -0.34 -16.21 3.59 -338.45 -1.22 -17.43 16 13 C 0.24 11.65 4.88 85.63 0.42 12.06 16 14 C -0.55 -31.94 9.94 25.60 0.25 -31.68 16 15 H 0.02 1.55 8.06 -2.91 -0.02 1.52 16 16 C 0.02 1.17 5.47 84.65 0.46 1.64 16 17 N -0.94 -57.60 13.96 21.45 0.30 -57.30 16 18 Si 0.95 40.98 27.47 68.60 1.88 42.87 16 19 H -0.25 -9.92 7.11 99.48 0.71 -9.21 16 20 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 21 H -0.24 -9.68 6.54 99.48 0.65 -9.02 16 22 N -0.35 -16.51 12.59 -54.46 -0.69 -17.19 16 23 C 0.10 1.97 11.50 85.71 0.99 2.96 16 24 N -0.29 -5.74 12.47 -56.22 -0.70 -6.44 16 25 N -0.36 -6.42 3.99 -479.80 -1.91 -8.33 16 26 C 0.08 0.62 11.41 127.77 1.46 2.08 16 27 H 0.08 0.58 8.14 -2.39 -0.02 0.57 16 28 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.42 10.63 7.77 -92.71 -0.72 9.91 16 31 H 0.17 6.69 5.91 -2.91 -0.02 6.67 16 32 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 33 H 0.07 2.42 7.71 -2.39 -0.02 2.40 16 34 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 35 H 0.05 2.38 7.20 -2.38 -0.02 2.37 16 36 H 0.07 3.07 7.07 -2.39 -0.02 3.05 16 37 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 38 H 0.23 2.69 7.50 -2.91 -0.02 2.67 16 39 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 40 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.11 0.56 8.03 -2.39 -0.02 0.54 16 Total: -1.00 -83.06 357.72 3.80 -79.26 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: 0.30 Total: 23.23 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: 8.26 Total: 10.71 kcal Atomic # 7 Polarization: -122.36 SS G_CDS: -5.91 Total: -128.27 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -0.74 Total: -27.80 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 1.88 Total: 42.87 kcal Total: -83.06 3.80 -79.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001435748714.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.005 kcal (2) G-P(sol) polarization free energy of solvation -83.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds