Wall clock time and date at job start Tue Mar 31 2020 12:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35949 * 117.00463 * 2 1 4 4 C 1.38664 * 120.06132 * 359.71744 * 3 2 1 5 5 C 1.38176 * 119.96947 * 180.27745 * 4 3 2 6 6 C 1.38256 * 120.09986 * 359.97438 * 5 4 3 7 7 C 1.50702 * 119.94157 * 180.02562 * 6 5 4 8 8 N 1.46908 * 109.46779 * 264.42102 * 7 6 5 9 9 C 1.46898 * 110.99868 * 75.82501 * 8 7 6 10 10 C 1.50704 * 109.46936 * 189.99668 * 9 8 7 11 11 H 1.08002 * 119.99867 * 359.97438 * 10 9 8 12 12 C 1.37880 * 119.99926 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99560 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99918 * 180.02562 * 12 10 9 15 15 H 1.48492 * 109.47018 * 89.99893 * 14 12 10 16 16 H 1.48503 * 109.46976 * 209.99974 * 14 12 10 17 17 H 1.48501 * 109.46783 * 329.99606 * 14 12 10 18 18 C 1.46901 * 110.99345 * 199.77687 * 8 7 6 19 19 C 1.50700 * 109.46976 * 75.60500 * 18 8 7 20 20 C 1.34516 * 125.79043 * 84.71333 * 19 18 8 21 21 C 1.41379 * 106.84083 * 179.88623 * 20 19 18 22 22 C 1.34519 * 106.84188 * 0.36963 * 21 20 19 23 23 O 1.34299 * 125.78827 * 265.01783 * 19 18 8 24 24 C 1.38264 * 120.12201 * 0.04438 * 6 5 4 25 25 C 1.38326 * 120.02988 * 359.95092 * 24 6 5 26 26 F 1.35102 * 120.04575 * 179.97438 * 25 24 6 27 27 H 1.09005 * 109.47043 * 60.00192 * 1 2 3 28 28 H 1.08996 * 109.47648 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47255 * 300.00382 * 1 2 3 30 30 H 1.08002 * 120.01686 * 0.25567 * 4 3 2 31 31 H 1.08008 * 119.95288 * 179.97438 * 5 4 3 32 32 H 1.08992 * 109.46881 * 24.41840 * 7 6 5 33 33 H 1.08996 * 109.47153 * 144.42420 * 7 6 5 34 34 H 1.09002 * 109.47145 * 309.99806 * 9 8 7 35 35 H 1.09007 * 109.47324 * 69.99785 * 9 8 7 36 36 H 0.97006 * 119.99269 * 180.02562 * 13 12 10 37 37 H 1.09004 * 109.46436 * 195.60328 * 18 8 7 38 38 H 1.08995 * 109.47429 * 315.59658 * 18 8 7 39 39 H 1.07993 * 126.57822 * 0.02562 * 20 19 18 40 40 H 1.07995 * 126.58279 * 180.16536 * 21 20 19 41 41 H 1.07996 * 125.79342 * 179.74781 * 22 21 20 42 42 H 1.07998 * 119.98006 * 179.97438 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2924 2.3751 -0.0059 5 6 1.9218 3.6051 -0.0117 6 6 3.3025 3.6776 -0.0111 7 6 3.9852 5.0211 -0.0168 8 7 4.3281 5.3901 -1.3968 9 6 3.1376 5.8336 -2.1343 10 6 3.4739 5.9676 -3.5972 11 1 4.4724 5.7459 -3.9442 12 6 2.5073 6.3742 -4.4924 13 7 1.2917 6.6446 -4.0697 14 14 2.9241 6.5396 -6.3058 15 1 2.6647 5.2490 -6.9930 16 1 2.0817 7.6015 -6.9124 17 1 4.3571 6.8998 -6.4534 18 6 5.3763 6.4190 -1.4215 19 6 6.7067 5.7885 -1.1001 20 6 7.5206 5.1773 -1.9797 21 6 8.6521 4.7388 -1.2544 22 6 8.4584 5.1009 0.0266 23 8 7.2783 5.7363 0.1140 24 6 4.0581 2.5197 -0.0056 25 6 3.4334 1.2855 0.0003 26 9 4.1714 0.1538 0.0052 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 0.2138 2.3201 -0.0064 31 1 1.3344 4.5115 -0.0167 32 1 3.3153 5.7708 0.4041 33 1 4.8945 4.9691 0.5819 34 1 2.3397 5.1013 -2.0105 35 1 2.8087 6.7981 -1.7473 36 1 0.6115 6.9303 -4.6996 37 1 5.4183 6.8711 -2.4125 38 1 5.1496 7.1865 -0.6815 39 1 7.3445 5.0485 -3.0373 40 1 9.5065 4.2111 -1.6517 41 1 9.1364 4.9123 0.8458 42 1 5.1364 2.5789 -0.0055 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078667479.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:16 Heat of formation + Delta-G solvation = -32.700914 kcal Electronic energy + Delta-G solvation = -26676.061853 eV Core-core repulsion = 22731.119237 eV Total energy + Delta-G solvation = -3944.942616 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.49239 -42.16123 -39.85782 -37.97482 -36.21233 -32.71121 -32.60480 -31.13351 -30.49214 -29.67842 -27.78443 -26.94859 -25.48614 -23.84860 -22.53863 -21.58868 -21.34770 -20.52887 -19.74467 -18.11744 -16.99533 -16.76267 -16.66323 -16.25849 -15.98266 -15.72184 -14.90191 -14.84387 -14.70629 -14.56998 -14.20072 -14.06047 -13.96672 -13.35247 -13.06192 -12.52756 -12.39741 -12.30045 -12.20507 -11.99571 -11.96738 -11.64136 -11.39366 -11.16815 -11.07957 -10.94293 -10.76735 -10.66722 -10.59614 -9.97362 -9.53737 -9.30388 -8.63931 -8.50018 -8.09797 -7.86784 -7.41918 -6.09677 -4.10753 1.43023 1.49281 2.10230 3.01463 3.23956 3.28987 3.35550 3.36977 3.38644 3.80576 4.38615 4.46391 4.87715 4.93733 5.01141 5.10354 5.13306 5.25547 5.28378 5.37809 5.38592 5.42044 5.45660 5.55179 5.71663 5.75197 5.85743 6.07583 6.14342 6.17266 6.25886 6.35041 6.38523 6.44177 6.53462 6.84036 6.87283 6.89837 7.11441 7.20270 7.43175 7.55051 7.71549 7.94830 8.06080 8.41395 8.96027 9.53802 11.00978 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.007738 B = 0.005500 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3617.802462 B = 5089.530004 C = 7672.916961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.315 6.315 3 C 0.086 3.914 4 C -0.180 4.180 5 C -0.072 4.072 6 C -0.065 4.065 7 C 0.091 3.909 8 N -0.526 5.526 9 C 0.191 3.809 10 C -0.511 4.511 11 H 0.064 0.936 12 C 0.059 3.941 13 N -0.896 5.896 14 Si 0.895 3.105 15 H -0.280 1.280 16 H -0.287 1.287 17 H -0.273 1.273 18 C 0.137 3.863 19 C 0.011 3.989 20 C -0.199 4.199 21 C -0.212 4.212 22 C -0.061 4.061 23 O -0.183 6.183 24 C -0.092 4.092 25 C 0.062 3.938 26 F -0.139 7.139 27 H 0.058 0.942 28 H 0.098 0.902 29 H 0.055 0.945 30 H 0.134 0.866 31 H 0.132 0.868 32 H 0.042 0.958 33 H 0.073 0.927 34 H 0.042 0.958 35 H -0.006 1.006 36 H 0.261 0.739 37 H 0.119 0.881 38 H 0.040 0.960 39 H 0.147 0.853 40 H 0.141 0.859 41 H 0.194 0.806 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.865 -6.301 10.554 12.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.229 6.229 3 C 0.040 3.960 4 C -0.199 4.199 5 C -0.091 4.091 6 C -0.066 4.066 7 C -0.036 4.036 8 N -0.251 5.251 9 C 0.067 3.933 10 C -0.549 4.549 11 H 0.082 0.918 12 C -0.143 4.143 13 N -0.536 5.536 14 Si 0.723 3.277 15 H -0.206 1.206 16 H -0.213 1.213 17 H -0.198 1.198 18 C 0.010 3.990 19 C -0.040 4.040 20 C -0.219 4.219 21 C -0.232 4.232 22 C -0.129 4.129 23 O -0.080 6.080 24 C -0.112 4.112 25 C 0.042 3.958 26 F -0.118 7.118 27 H 0.077 0.923 28 H 0.116 0.884 29 H 0.073 0.927 30 H 0.152 0.848 31 H 0.150 0.850 32 H 0.060 0.940 33 H 0.091 0.909 34 H 0.059 0.941 35 H 0.012 0.988 36 H 0.071 0.929 37 H 0.137 0.863 38 H 0.058 0.942 39 H 0.165 0.835 40 H 0.159 0.841 41 H 0.211 0.789 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.830 -6.753 10.507 13.064 hybrid contribution -0.166 0.486 -0.923 1.056 sum 3.665 -6.267 9.584 12.023 Atomic orbital electron populations 1.23060 0.78351 1.03763 1.01577 1.86085 1.21408 1.26206 1.89171 1.18922 0.90730 0.85370 1.01003 1.21044 0.99992 0.91440 1.07443 1.20989 0.94134 0.97324 0.96607 1.19528 0.92921 0.94773 0.99359 1.21013 0.98565 0.92138 0.91930 1.62066 1.11912 1.40296 1.10781 1.19851 0.86219 0.94368 0.92866 1.21139 0.97374 1.44702 0.91687 0.91758 1.24947 0.94942 0.95412 0.98994 1.69944 1.02512 1.46270 1.34849 0.86534 0.78382 0.77759 0.84994 1.20649 1.21324 1.19764 1.20553 0.84007 0.91588 1.02882 1.22819 0.96852 1.02735 0.81557 1.21563 0.94985 1.04049 1.01275 1.21802 1.00939 1.06468 0.93951 1.23827 0.88164 1.01840 0.99023 1.84003 1.29707 1.61190 1.33067 1.20787 1.00820 0.89505 1.00068 1.16899 0.85812 0.82826 1.10223 1.91457 1.76552 1.49234 1.94533 0.92334 0.88367 0.92662 0.84804 0.84986 0.94002 0.90870 0.94050 0.98822 0.92896 0.86278 0.94222 0.83549 0.84110 0.78888 0.84455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.31 -4.72 10.36 -19.58 -0.20 -4.93 16 3 C 0.09 1.39 6.69 -39.18 -0.26 1.12 16 4 C -0.18 -2.72 9.04 -39.45 -0.36 -3.07 16 5 C -0.07 -1.17 8.39 -39.60 -0.33 -1.50 16 6 C -0.06 -1.11 5.04 -104.61 -0.53 -1.64 16 7 C 0.09 1.58 4.94 -4.97 -0.02 1.56 16 8 N -0.53 -10.58 4.34 -238.96 -1.04 -11.61 16 9 C 0.19 4.59 4.54 -4.98 -0.02 4.56 16 10 C -0.51 -13.49 8.24 -34.44 -0.28 -13.77 16 11 H 0.06 1.69 7.31 -52.49 -0.38 1.30 16 12 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 13 N -0.90 -25.37 13.29 55.43 0.74 -24.63 16 14 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 18 C 0.14 2.53 5.33 -4.98 -0.03 2.50 16 19 C 0.01 0.19 6.16 -35.62 -0.22 -0.03 16 20 C -0.20 -3.30 10.81 -39.70 -0.43 -3.73 16 21 C -0.21 -2.97 10.91 -39.70 -0.43 -3.41 16 22 C -0.06 -0.80 12.09 29.42 0.36 -0.44 16 23 O -0.18 -2.90 10.17 5.71 0.06 -2.84 16 24 C -0.09 -1.56 9.70 -39.54 -0.38 -1.95 16 25 C 0.06 1.07 7.31 -39.30 -0.29 0.78 16 26 F -0.14 -2.45 17.11 2.25 0.04 -2.41 16 27 H 0.06 0.58 7.65 -51.93 -0.40 0.18 16 28 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.48 7.67 -51.93 -0.40 0.08 16 30 H 0.13 1.65 6.30 -52.49 -0.33 1.32 16 31 H 0.13 2.08 7.99 -52.48 -0.42 1.66 16 32 H 0.04 0.70 7.90 -51.93 -0.41 0.29 16 33 H 0.07 1.19 6.87 -51.93 -0.36 0.84 16 34 H 0.04 1.06 6.33 -51.93 -0.33 0.73 16 35 H -0.01 -0.15 8.12 -51.93 -0.42 -0.57 16 36 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 37 H 0.12 2.35 6.58 -51.93 -0.34 2.01 16 38 H 0.04 0.69 8.00 -51.93 -0.42 0.27 16 39 H 0.15 2.44 8.06 -52.49 -0.42 2.02 16 40 H 0.14 1.62 8.06 -52.49 -0.42 1.20 16 41 H 0.19 1.72 8.06 -52.49 -0.42 1.30 16 42 H 0.14 2.22 8.06 -52.49 -0.42 1.80 16 LS Contribution 359.98 15.07 5.42 5.42 Total: -1.00 -30.36 359.98 -7.79 -38.15 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -5.45 Total: 3.09 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: -2.34 Total: -16.24 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: -0.30 Total: -36.24 kcal Atomic # 8 Polarization: -7.62 SS G_CDS: -0.14 Total: -7.76 kcal Atomic # 9 Polarization: -2.45 SS G_CDS: 0.04 Total: -2.41 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.36 -7.79 -38.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078667479.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.452 kcal (2) G-P(sol) polarization free energy of solvation -30.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds