Wall clock time and date at job start Tue Mar 31 2020 12:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34774 * 119.99869 * 2 1 4 4 O 1.21547 * 119.99844 * 174.80151 * 3 2 1 5 5 C 1.47864 * 120.00214 * 354.79838 * 3 2 1 6 6 C 1.39677 * 120.10155 * 335.43008 * 5 3 2 7 7 C 1.38033 * 120.03799 * 179.97438 * 6 5 3 8 8 C 1.38182 * 120.24582 * 359.73030 * 7 6 5 9 9 C 1.39187 * 120.19825 * 0.52558 * 8 7 6 10 10 S 1.76197 * 120.01825 * 179.76343 * 9 8 7 11 11 C 1.76202 * 99.99863 * 265.73045 * 10 9 8 12 12 H 1.07999 * 119.99865 * 5.21742 * 11 10 9 13 13 C 1.38730 * 119.99986 * 185.21730 * 11 10 9 14 14 N 1.31627 * 119.99791 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00124 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46561 * 90.00290 * 15 13 11 17 17 H 1.48494 * 109.47536 * 210.00134 * 15 13 11 18 18 H 1.48504 * 109.46957 * 330.00465 * 15 13 11 19 19 C 1.38872 * 119.96008 * 359.47696 * 9 8 7 20 20 C 1.46502 * 119.99941 * 180.02562 * 2 1 3 21 21 C 1.52999 * 109.46956 * 59.99793 * 20 2 1 22 22 C 1.53003 * 109.47199 * 180.02562 * 21 20 2 23 23 C 1.53002 * 109.47179 * 59.99793 * 22 21 20 24 24 C 1.53003 * 109.46851 * 300.00553 * 23 22 21 25 25 C 1.52998 * 109.47547 * 60.00065 * 24 23 22 26 26 H 1.08999 * 109.46898 * 95.81247 * 1 2 3 27 27 H 1.09003 * 109.46783 * 215.81221 * 1 2 3 28 28 H 1.09005 * 109.46832 * 335.81026 * 1 2 3 29 29 H 1.08002 * 119.97574 * 359.94601 * 6 5 3 30 30 H 1.08004 * 119.87980 * 180.02562 * 7 6 5 31 31 H 1.08000 * 119.89977 * 180.25826 * 8 7 6 32 32 H 0.97005 * 119.99837 * 180.02562 * 14 13 11 33 33 H 1.07995 * 120.12427 * 180.23830 * 19 9 8 34 34 H 1.08995 * 109.46862 * 179.97438 * 20 2 1 35 35 H 1.09002 * 109.47474 * 300.00098 * 21 20 2 36 36 H 1.09001 * 109.47552 * 59.99758 * 21 20 2 37 37 H 1.09002 * 109.46969 * 300.00384 * 22 21 20 38 38 H 1.09002 * 109.47339 * 179.97438 * 22 21 20 39 39 H 1.08995 * 109.47276 * 180.02562 * 23 22 21 40 40 H 1.09003 * 109.47096 * 60.00069 * 23 22 21 41 41 H 1.09002 * 109.47366 * 299.99451 * 24 23 22 42 42 H 1.09007 * 109.46778 * 180.02562 * 24 23 22 43 43 H 1.09002 * 109.47206 * 180.02562 * 25 24 23 44 44 H 1.09002 * 109.47290 * 59.99339 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3506 1.1693 0.0954 5 6 1.4042 2.4451 -0.1161 6 6 0.1457 2.4771 -0.7213 7 6 -0.5392 3.6707 -0.8285 8 6 0.0128 4.8369 -0.3337 9 6 1.2684 4.8174 0.2665 10 16 1.9705 6.3083 0.8902 11 6 2.9363 6.7967 -0.5002 12 1 2.8794 6.2355 -1.4212 13 6 3.7700 7.9021 -0.4119 14 7 3.8398 8.5857 0.7108 15 14 4.7945 8.4195 -1.8857 16 1 4.0210 9.3796 -2.7135 17 1 6.0457 9.0667 -1.4162 18 1 5.1309 7.2234 -2.6991 19 6 1.9650 3.6213 0.3788 20 6 2.1976 -1.2688 -0.0006 21 6 1.8279 -2.0705 -1.2501 22 6 2.5924 -3.3958 -1.2505 23 6 2.2222 -4.1984 -0.0015 24 6 2.5919 -3.3966 1.2480 25 6 1.8274 -2.0713 1.2483 26 1 -0.3633 -0.1041 -1.0224 27 1 -0.3633 -0.8334 0.6013 28 1 -0.3633 0.9375 0.4211 29 1 -0.2913 1.5675 -1.1060 30 1 -1.5123 3.6925 -1.2966 31 1 -0.5299 5.7669 -0.4169 32 1 4.4224 9.3588 0.7724 33 1 2.9377 3.6025 0.8475 34 1 3.2692 -1.0695 -0.0009 35 1 0.7562 -2.2696 -1.2503 36 1 2.0911 -1.4985 -2.1399 37 1 3.6641 -3.1970 -1.2501 38 1 2.3287 -3.9672 -2.1405 39 1 2.7672 -5.1424 -0.0015 40 1 1.1505 -4.3972 -0.0018 41 1 3.6636 -3.1978 1.2483 42 1 2.3286 -3.9686 2.1378 43 1 2.0911 -1.4999 2.1383 44 1 0.7556 -2.2701 1.2480 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079380063.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:13 Heat of formation + Delta-G solvation = -14.354499 kcal Electronic energy + Delta-G solvation = -24105.216456 eV Core-core repulsion = 20727.282576 eV Total energy + Delta-G solvation = -3377.933880 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.57342 -38.68614 -37.49735 -35.27228 -32.48958 -31.49077 -31.06506 -30.61079 -29.32944 -27.19595 -25.54836 -23.99053 -22.91531 -22.37836 -21.88051 -19.98790 -19.55227 -17.94752 -16.93796 -16.75534 -16.19833 -15.43370 -15.27746 -14.83593 -14.78196 -14.47432 -14.37860 -14.20312 -13.72064 -13.33422 -13.28859 -13.01853 -12.98177 -12.74019 -12.53938 -12.45080 -12.04753 -11.46340 -11.42023 -11.26457 -11.14575 -11.08070 -11.04166 -10.94078 -10.68383 -10.58043 -10.51551 -9.91925 -9.69780 -9.14371 -8.94107 -8.76204 -8.52801 -7.99023 -6.69990 -6.27018 -4.00898 1.22450 1.67862 2.87162 3.00634 3.21301 3.24669 3.29996 3.49027 4.06830 4.25920 4.34989 4.47566 4.59703 4.65364 4.85332 4.88803 4.93531 5.09393 5.10955 5.17660 5.19602 5.21574 5.29805 5.32807 5.34368 5.45641 5.49157 5.53872 5.71176 5.73459 5.75484 5.81782 5.83557 5.89100 5.92142 6.00666 6.05701 6.13778 6.27968 6.47808 6.61737 6.66825 6.94717 7.21272 7.36275 7.59674 8.26266 8.34867 9.19054 10.79738 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.020269 B = 0.002880 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.097834 B = 9720.714416 C =10277.285249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.612 5.612 3 C 0.564 3.436 4 O -0.534 6.534 5 C -0.153 4.153 6 C -0.107 4.107 7 C -0.144 4.144 8 C -0.056 4.056 9 C -0.107 4.107 10 S -0.037 6.037 11 C -0.518 4.518 12 H 0.076 0.924 13 C 0.073 3.927 14 N -0.871 5.871 15 Si 0.921 3.079 16 H -0.276 1.276 17 H -0.281 1.281 18 H -0.271 1.271 19 C -0.021 4.021 20 C 0.140 3.860 21 C -0.127 4.127 22 C -0.117 4.117 23 C -0.120 4.120 24 C -0.117 4.117 25 C -0.128 4.128 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.092 0.908 29 H 0.137 0.863 30 H 0.123 0.877 31 H 0.130 0.870 32 H 0.269 0.731 33 H 0.136 0.864 34 H 0.101 0.899 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.456 -23.253 -2.012 25.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.345 5.345 3 C 0.355 3.645 4 O -0.410 6.410 5 C -0.158 4.158 6 C -0.126 4.126 7 C -0.163 4.163 8 C -0.077 4.077 9 C -0.217 4.217 10 S 0.198 5.802 11 C -0.666 4.666 12 H 0.094 0.906 13 C -0.136 4.136 14 N -0.506 5.506 15 Si 0.747 3.253 16 H -0.202 1.202 17 H -0.206 1.206 18 H -0.195 1.195 19 C -0.042 4.042 20 C 0.037 3.963 21 C -0.165 4.165 22 C -0.155 4.155 23 C -0.158 4.158 24 C -0.155 4.155 25 C -0.166 4.166 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.110 0.890 29 H 0.154 0.846 30 H 0.141 0.859 31 H 0.148 0.852 32 H 0.079 0.921 33 H 0.153 0.847 34 H 0.119 0.881 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.817 -22.513 -0.814 24.192 hybrid contribution 0.647 -0.283 -2.119 2.234 sum -8.170 -22.796 -2.933 24.393 Atomic orbital electron populations 1.22379 0.80136 1.04021 1.01279 1.47741 1.06788 1.05501 1.74469 1.18545 0.87021 0.83515 0.75452 1.90762 1.13875 1.87055 1.49357 1.19816 0.96322 0.93302 1.06338 1.21881 0.93575 0.98831 0.98270 1.21092 1.00422 0.92616 1.02204 1.21959 0.94603 0.98067 0.93119 1.22821 0.96979 1.00568 1.01357 1.83572 1.57119 1.15767 1.23764 1.22838 1.29211 1.16318 0.98194 0.90618 1.25001 0.96024 0.95497 0.97061 1.69990 1.37452 1.18078 1.25127 0.86121 0.79149 0.78830 0.81249 1.20171 1.20646 1.19517 1.21903 0.98607 0.89955 0.93771 1.21086 0.98438 0.82260 0.94514 1.21878 1.00621 0.96117 0.97903 1.21502 1.00577 0.95479 0.97956 1.21562 1.01306 0.98301 0.94599 1.21502 1.00601 0.95484 0.97925 1.21879 1.00578 0.96134 0.97997 0.92359 0.91514 0.88954 0.84564 0.85909 0.85169 0.92079 0.84664 0.88055 0.91681 0.91581 0.91646 0.91713 0.91931 0.92000 0.91631 0.91696 0.91434 0.91634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.57 7.78 59.85 0.47 1.03 16 2 N -0.61 -7.56 2.76 -175.03 -0.48 -8.05 16 3 C 0.56 9.52 7.49 -12.32 -0.09 9.42 16 4 O -0.53 -10.98 15.94 5.32 0.08 -10.89 16 5 C -0.15 -2.64 5.49 -104.99 -0.58 -3.22 16 6 C -0.11 -1.49 7.53 -39.12 -0.29 -1.79 16 7 C -0.14 -2.06 10.02 -39.68 -0.40 -2.46 16 8 C -0.06 -1.02 9.79 -39.25 -0.38 -1.40 16 9 C -0.11 -2.30 5.45 -38.99 -0.21 -2.52 16 10 S -0.04 -0.96 21.41 -107.50 -2.30 -3.26 16 11 C -0.52 -14.85 9.46 30.91 0.29 -14.55 16 12 H 0.08 2.16 7.79 -52.49 -0.41 1.75 16 13 C 0.07 2.08 5.49 -17.46 -0.10 1.98 16 14 N -0.87 -25.73 13.22 55.49 0.73 -24.99 16 15 Si 0.92 21.79 29.55 -169.99 -5.02 16.77 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 19 C -0.02 -0.43 9.34 -38.92 -0.36 -0.79 16 20 C 0.14 1.52 2.52 -67.93 -0.17 1.35 16 21 C -0.13 -1.11 5.20 -26.73 -0.14 -1.25 16 22 C -0.12 -0.86 5.92 -26.73 -0.16 -1.02 16 23 C -0.12 -0.79 5.92 -26.73 -0.16 -0.95 16 24 C -0.12 -0.87 5.92 -26.73 -0.16 -1.03 16 25 C -0.13 -1.14 5.17 -26.73 -0.14 -1.27 16 26 H 0.06 0.42 7.13 -51.93 -0.37 0.05 16 27 H 0.07 0.46 6.45 -51.93 -0.34 0.13 16 28 H 0.09 0.87 5.12 -51.93 -0.27 0.61 16 29 H 0.14 1.42 4.43 -52.49 -0.23 1.19 16 30 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 31 H 0.13 2.24 8.06 -52.49 -0.42 1.81 16 32 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.14 3.03 7.84 -52.49 -0.41 2.62 16 34 H 0.10 1.37 6.91 -51.93 -0.36 1.01 16 35 H 0.06 0.49 7.67 -51.93 -0.40 0.10 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.43 8.14 -51.92 -0.42 0.00 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.07 0.51 6.70 -51.93 -0.35 0.16 16 LS Contribution 362.31 15.07 5.46 5.46 Total: -1.00 -32.84 362.31 -10.60 -43.45 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -6.49 Total: -0.02 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: -2.58 Total: -18.47 kcal Atomic # 7 Polarization: -33.29 SS G_CDS: 0.25 Total: -33.04 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.08 Total: -10.89 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: -0.96 SS G_CDS: -2.30 Total: -3.26 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.84 -10.60 -43.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079380063.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.091 kcal (2) G-P(sol) polarization free energy of solvation -32.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds