Wall clock time and date at job start Tue Mar 31 2020 12:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 C 1.81393 * 103.00146 * 2 1 4 4 H 1.08999 * 110.43682 * 52.46570 * 3 2 1 5 5 C 1.54886 * 110.60364 * 289.84316 * 3 2 1 6 6 C 1.54890 * 102.75364 * 203.32551 * 5 3 2 7 7 C 1.54377 * 104.19716 * 37.96527 * 6 5 3 8 8 H 1.08995 * 110.07249 * 95.62612 * 7 6 5 9 9 N 1.46500 * 110.04628 * 217.09617 * 7 6 5 10 10 C 1.46498 * 120.00196 * 57.11088 * 9 7 6 11 11 C 1.34778 * 119.99581 * 237.10808 * 9 7 6 12 12 O 1.21542 * 120.00301 * 355.47470 * 11 9 7 13 13 C 1.47887 * 119.99926 * 175.47234 * 11 9 7 14 14 C 1.39915 * 120.02760 * 221.47623 * 13 11 9 15 15 C 1.38326 * 120.35871 * 179.78423 * 14 13 11 16 16 C 1.37747 * 120.41418 * 0.46969 * 15 14 13 17 17 C 1.40755 * 120.03691 * 359.78443 * 16 15 14 18 18 C 1.41440 * 120.17594 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99997 * 29.11134 * 18 17 16 20 20 C 1.39941 * 119.99684 * 209.11674 * 18 17 16 21 21 N 1.30819 * 120.00198 * 10.59239 * 20 18 17 22 22 Si 1.86803 * 119.99459 * 190.59280 * 20 18 17 23 23 H 1.48503 * 109.46927 * 60.00179 * 22 20 18 24 24 H 1.48506 * 109.46806 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47286 * 300.00090 * 22 20 18 26 26 C 1.39000 * 120.02217 * 41.74623 * 13 11 9 27 27 C 1.53876 * 106.54515 * 336.35749 * 7 6 5 28 28 H 1.09003 * 109.47337 * 59.99707 * 1 2 3 29 29 H 1.09003 * 109.47761 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47170 * 300.00125 * 1 2 3 31 31 H 1.09004 * 110.75550 * 321.63604 * 5 3 2 32 32 H 1.08997 * 110.75662 * 85.00510 * 5 3 2 33 33 H 1.08993 * 110.49290 * 156.61588 * 6 5 3 34 34 H 1.08997 * 110.48552 * 279.26623 * 6 5 3 35 35 H 1.09002 * 109.47331 * 95.24723 * 10 9 7 36 36 H 1.09002 * 109.46976 * 215.24309 * 10 9 7 37 37 H 1.08997 * 109.46989 * 335.24587 * 10 9 7 38 38 H 1.08005 * 119.81887 * 359.97438 * 14 13 11 39 39 H 1.08007 * 119.79057 * 180.22971 * 15 14 13 40 40 H 1.08004 * 119.98617 * 179.76435 * 16 15 14 41 41 H 0.97004 * 120.00182 * 179.97438 * 21 20 18 42 42 H 1.08000 * 120.20374 * 0.02562 * 26 13 11 43 43 H 1.08998 * 110.03377 * 240.73253 * 27 7 6 44 44 H 1.08993 * 110.03451 * 119.34648 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7674 0.0000 4 1 1.7013 2.2783 0.8099 5 6 1.8651 2.4092 -1.3637 6 6 2.7881 3.6522 -1.4086 7 6 4.1073 3.1675 -0.7699 8 1 4.8064 2.8560 -1.5459 9 7 4.6974 4.2381 0.0376 10 6 3.9279 4.8423 1.1280 11 6 5.9483 4.6671 -0.2228 12 8 6.6168 4.1115 -1.0723 13 6 6.5073 5.8140 0.5250 14 6 7.2586 6.7866 -0.1437 15 6 7.7809 7.8645 0.5482 16 6 7.5759 7.9880 1.9047 17 6 6.8272 7.0167 2.5954 18 6 6.6144 7.1408 3.9882 19 1 6.5841 8.1191 4.4448 20 6 6.4432 5.9960 4.7746 21 7 6.6836 4.8135 4.2695 22 14 5.8714 6.1566 6.5457 23 1 4.5416 6.8167 6.5786 24 1 5.7690 4.8071 7.1570 25 1 6.8486 6.9735 7.3092 26 6 6.2914 5.9235 1.8938 27 6 3.7463 1.9696 0.1259 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3635 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 2.0946 1.7280 -2.1831 32 1 0.8165 2.7056 -1.3885 33 1 2.9563 3.9656 -2.4389 34 1 2.3588 4.4674 -0.8262 35 1 4.1834 4.3527 2.0677 36 1 4.1651 5.9040 1.1952 37 1 2.8627 4.7196 0.9323 38 1 7.4290 6.6969 -1.2064 39 1 8.3564 8.6120 0.0222 40 1 7.9901 8.8304 2.4388 41 1 6.5653 4.0199 4.8147 42 1 5.7162 5.1725 2.4149 43 1 4.0100 2.1848 1.1614 44 1 4.2707 1.0770 -0.2149 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081226853.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:31 Heat of formation + Delta-G solvation = -20.791889 kcal Electronic energy + Delta-G solvation = -24748.531618 eV Core-core repulsion = 21370.318592 eV Total energy + Delta-G solvation = -3378.213026 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.92747 -37.95508 -36.84000 -34.28247 -33.68292 -30.37592 -29.71575 -29.24669 -28.89663 -27.75695 -26.27414 -25.31192 -22.56536 -21.21590 -20.97310 -20.01859 -18.77190 -17.33011 -16.90679 -16.38545 -16.06131 -15.25634 -15.13013 -14.80953 -14.56367 -14.51155 -13.96816 -13.62536 -13.55420 -13.26903 -13.18378 -12.71801 -12.63819 -12.34109 -12.08951 -11.95237 -11.78631 -11.56329 -11.52139 -11.28928 -11.16774 -11.11410 -10.95003 -10.74342 -10.64797 -10.53545 -10.13851 -10.00324 -9.71262 -9.31304 -8.95702 -8.23869 -7.84688 -7.63096 -7.47421 -6.79907 -4.49016 1.51585 2.28826 2.39220 2.77211 3.02271 3.04258 3.10782 3.42154 3.64292 3.87192 4.32552 4.41095 4.55919 4.88434 4.89362 4.95293 5.18355 5.26124 5.30513 5.34740 5.39567 5.44966 5.46503 5.50163 5.62563 5.66450 5.85503 5.93333 6.03715 6.13850 6.18290 6.20674 6.32929 6.42198 6.66347 6.92945 6.93352 7.04010 7.17013 7.35258 7.66642 7.71883 7.86547 7.96729 8.09703 8.44429 8.75391 8.78557 8.83618 10.14484 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.012506 B = 0.003990 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.407863 B = 7016.375707 C = 8721.239666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.260 6.260 3 C -0.055 4.055 4 H 0.091 0.909 5 C -0.114 4.114 6 C -0.133 4.133 7 C 0.142 3.858 8 H 0.105 0.895 9 N -0.609 5.609 10 C 0.077 3.923 11 C 0.573 3.427 12 O -0.555 6.555 13 C -0.124 4.124 14 C -0.184 4.184 15 C -0.105 4.105 16 C -0.201 4.201 17 C 0.099 3.901 18 C -0.464 4.464 19 H 0.078 0.922 20 C 0.075 3.925 21 N -0.805 5.805 22 Si 0.909 3.091 23 H -0.264 1.264 24 H -0.278 1.278 25 H -0.266 1.266 26 C -0.123 4.123 27 C -0.112 4.112 28 H 0.075 0.925 29 H 0.098 0.902 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.085 0.915 37 H 0.059 0.941 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.282 0.718 42 H 0.137 0.863 43 H 0.084 0.916 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.249 -5.309 -5.372 15.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.032 6.032 3 C -0.184 4.184 4 H 0.110 0.890 5 C -0.154 4.154 6 C -0.173 4.173 7 C 0.037 3.963 8 H 0.123 0.877 9 N -0.342 5.342 10 C -0.065 4.065 11 C 0.364 3.636 12 O -0.434 6.434 13 C -0.127 4.127 14 C -0.204 4.204 15 C -0.123 4.123 16 C -0.221 4.221 17 C 0.097 3.903 18 C -0.494 4.494 19 H 0.096 0.904 20 C -0.142 4.142 21 N -0.431 5.431 22 Si 0.734 3.266 23 H -0.189 1.189 24 H -0.203 1.203 25 H -0.190 1.190 26 C -0.143 4.143 27 C -0.152 4.152 28 H 0.094 0.906 29 H 0.116 0.884 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.104 0.896 37 H 0.078 0.922 38 H 0.114 0.886 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.093 0.907 42 H 0.154 0.846 43 H 0.103 0.897 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.232 -6.777 -5.708 15.104 hybrid contribution -1.038 0.954 1.042 1.753 sum -13.270 -5.823 -4.666 15.224 Atomic orbital electron populations 1.23354 0.94772 1.06196 1.04816 1.86950 1.06825 1.11537 1.97856 1.24050 1.00523 0.92876 1.00977 0.89032 1.22826 0.99451 0.97212 0.95922 1.22801 0.95008 0.97766 1.01698 1.21598 0.94967 0.86373 0.93336 0.87704 1.47790 1.15139 1.37223 1.34033 1.22047 0.94876 1.00202 0.89417 1.18948 0.80097 0.83109 0.81403 1.90654 1.59115 1.58435 1.35181 1.19460 1.03077 0.95278 0.94888 1.20340 1.05177 0.96710 0.98149 1.20496 1.00053 0.97156 0.94577 1.21216 1.04413 1.02487 0.93936 1.17562 0.88735 0.90782 0.93259 1.19507 1.44075 0.93741 0.92103 0.90386 1.25863 0.92698 0.94748 1.00864 1.69751 1.35930 0.99023 1.38373 0.86344 0.80244 0.78326 0.81700 1.18859 1.20326 1.19020 1.21896 1.01259 1.00621 0.90543 1.22370 0.91835 0.98848 1.02129 0.90568 0.88377 0.90628 0.89919 0.91290 0.90702 0.90442 0.91966 0.89603 0.92190 0.88621 0.88678 0.88539 0.90745 0.84560 0.89712 0.90232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.94 10.72 101.05 1.08 0.15 16 2 S -0.26 -2.86 21.64 -107.50 -2.33 -5.19 16 3 C -0.06 -0.60 3.36 -25.07 -0.08 -0.68 16 4 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 5 C -0.11 -1.09 6.30 -24.74 -0.16 -1.24 16 6 C -0.13 -1.50 6.32 -25.01 -0.16 -1.66 16 7 C 0.14 2.07 3.30 -66.75 -0.22 1.85 16 8 H 0.10 1.72 6.96 -51.93 -0.36 1.35 16 9 N -0.61 -10.64 2.75 -173.69 -0.48 -11.12 16 10 C 0.08 1.22 7.79 59.85 0.47 1.69 16 11 C 0.57 12.51 7.32 -12.31 -0.09 12.42 16 12 O -0.56 -13.42 16.30 5.33 0.09 -13.33 16 13 C -0.12 -2.89 5.15 -105.04 -0.54 -3.43 16 14 C -0.18 -4.19 9.65 -38.92 -0.38 -4.56 16 15 C -0.10 -2.29 10.01 -39.73 -0.40 -2.69 16 16 C -0.20 -4.69 9.78 -38.81 -0.38 -5.07 16 17 C 0.10 2.48 5.54 -106.87 -0.59 1.88 16 18 C -0.46 -11.53 9.06 -37.73 -0.34 -11.87 16 19 H 0.08 1.86 7.87 -52.48 -0.41 1.45 16 20 C 0.07 1.77 5.25 -17.35 -0.09 1.68 16 21 N -0.80 -19.82 10.86 55.55 0.60 -19.22 16 22 Si 0.91 17.77 29.57 -169.99 -5.03 12.74 16 23 H -0.26 -5.05 7.11 56.52 0.40 -4.64 16 24 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 25 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 26 C -0.12 -2.97 6.23 -38.44 -0.24 -3.21 16 27 C -0.11 -1.49 5.88 -25.61 -0.15 -1.64 16 28 H 0.08 0.51 8.14 -51.92 -0.42 0.09 16 29 H 0.10 0.65 8.14 -51.92 -0.42 0.22 16 30 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 31 H 0.08 0.79 8.06 -51.93 -0.42 0.37 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.08 0.86 6.19 -51.93 -0.32 0.54 16 35 H 0.06 1.05 6.79 -51.93 -0.35 0.70 16 36 H 0.09 1.50 6.01 -51.93 -0.31 1.19 16 37 H 0.06 0.75 6.34 -51.93 -0.33 0.42 16 38 H 0.10 2.09 8.06 -52.48 -0.42 1.66 16 39 H 0.10 1.79 8.06 -52.48 -0.42 1.37 16 40 H 0.10 2.10 8.06 -52.48 -0.42 1.67 16 41 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 42 H 0.14 3.26 3.72 -52.49 -0.20 3.06 16 43 H 0.08 1.24 7.36 -51.93 -0.38 0.85 16 44 H 0.08 1.10 7.80 -51.93 -0.40 0.69 16 LS Contribution 362.52 15.07 5.46 5.46 Total: -1.00 -28.19 362.52 -10.38 -38.56 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -6.43 Total: 8.48 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: -2.27 Total: -16.39 kcal Atomic # 7 Polarization: -30.47 SS G_CDS: 0.13 Total: -30.34 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: 0.09 Total: -13.33 kcal Atomic # 14 Polarization: 17.77 SS G_CDS: -5.03 Total: 12.74 kcal Atomic # 16 Polarization: -2.86 SS G_CDS: -2.33 Total: -5.19 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -28.19 -10.38 -38.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081226853.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.771 kcal (2) G-P(sol) polarization free energy of solvation -28.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds