Wall clock time and date at job start Tue Mar 31 2020 12:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 C 1.81393 * 103.00146 * 2 1 4 4 H 1.08999 * 110.43682 * 52.46570 * 3 2 1 5 5 C 1.54886 * 110.60364 * 289.84316 * 3 2 1 6 6 C 1.54890 * 102.75364 * 203.32551 * 5 3 2 7 7 C 1.54377 * 104.19716 * 37.96527 * 6 5 3 8 8 H 1.08995 * 110.07249 * 95.62612 * 7 6 5 9 9 N 1.46500 * 110.04628 * 217.09617 * 7 6 5 10 10 C 1.46498 * 120.00196 * 57.11088 * 9 7 6 11 11 C 1.34778 * 119.99581 * 237.10808 * 9 7 6 12 12 O 1.21542 * 120.00301 * 355.47470 * 11 9 7 13 13 C 1.47887 * 119.99926 * 175.47234 * 11 9 7 14 14 C 1.39915 * 120.02760 * 221.47623 * 13 11 9 15 15 C 1.38326 * 120.35871 * 179.78423 * 14 13 11 16 16 C 1.37747 * 120.41418 * 0.46969 * 15 14 13 17 17 C 1.40755 * 120.03691 * 359.78443 * 16 15 14 18 18 C 1.41440 * 120.17594 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99997 * 29.11134 * 18 17 16 20 20 C 1.39941 * 119.99684 * 209.11674 * 18 17 16 21 21 N 1.30819 * 120.00198 * 10.59239 * 20 18 17 22 22 Si 1.86803 * 119.99459 * 190.59280 * 20 18 17 23 23 H 1.48503 * 109.46927 * 60.00179 * 22 20 18 24 24 H 1.48506 * 109.46806 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47286 * 300.00090 * 22 20 18 26 26 C 1.39000 * 120.02217 * 41.74623 * 13 11 9 27 27 C 1.53876 * 106.54515 * 336.35749 * 7 6 5 28 28 H 1.09003 * 109.47337 * 59.99707 * 1 2 3 29 29 H 1.09003 * 109.47761 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47170 * 300.00125 * 1 2 3 31 31 H 1.09004 * 110.75550 * 321.63604 * 5 3 2 32 32 H 1.08997 * 110.75662 * 85.00510 * 5 3 2 33 33 H 1.08993 * 110.49290 * 156.61588 * 6 5 3 34 34 H 1.08997 * 110.48552 * 279.26623 * 6 5 3 35 35 H 1.09002 * 109.47331 * 95.24723 * 10 9 7 36 36 H 1.09002 * 109.46976 * 215.24309 * 10 9 7 37 37 H 1.08997 * 109.46989 * 335.24587 * 10 9 7 38 38 H 1.08005 * 119.81887 * 359.97438 * 14 13 11 39 39 H 1.08007 * 119.79057 * 180.22971 * 15 14 13 40 40 H 1.08004 * 119.98617 * 179.76435 * 16 15 14 41 41 H 0.97004 * 120.00182 * 179.97438 * 21 20 18 42 42 H 1.08000 * 120.20374 * 0.02562 * 26 13 11 43 43 H 1.08998 * 110.03377 * 240.73253 * 27 7 6 44 44 H 1.08993 * 110.03451 * 119.34648 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7674 0.0000 4 1 1.7013 2.2783 0.8099 5 6 1.8651 2.4092 -1.3637 6 6 2.7881 3.6522 -1.4086 7 6 4.1073 3.1675 -0.7699 8 1 4.8064 2.8560 -1.5459 9 7 4.6974 4.2381 0.0376 10 6 3.9279 4.8423 1.1280 11 6 5.9483 4.6671 -0.2228 12 8 6.6168 4.1115 -1.0723 13 6 6.5073 5.8140 0.5250 14 6 7.2586 6.7866 -0.1437 15 6 7.7809 7.8645 0.5482 16 6 7.5759 7.9880 1.9047 17 6 6.8272 7.0167 2.5954 18 6 6.6144 7.1408 3.9882 19 1 6.5841 8.1191 4.4448 20 6 6.4432 5.9960 4.7746 21 7 6.6836 4.8135 4.2695 22 14 5.8714 6.1566 6.5457 23 1 4.5416 6.8167 6.5786 24 1 5.7690 4.8071 7.1570 25 1 6.8486 6.9735 7.3092 26 6 6.2914 5.9235 1.8938 27 6 3.7463 1.9696 0.1259 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3635 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 2.0946 1.7280 -2.1831 32 1 0.8165 2.7056 -1.3885 33 1 2.9563 3.9656 -2.4389 34 1 2.3588 4.4674 -0.8262 35 1 4.1834 4.3527 2.0677 36 1 4.1651 5.9040 1.1952 37 1 2.8627 4.7196 0.9323 38 1 7.4290 6.6969 -1.2064 39 1 8.3564 8.6120 0.0222 40 1 7.9901 8.8304 2.4388 41 1 6.5653 4.0199 4.8147 42 1 5.7162 5.1725 2.4149 43 1 4.0100 2.1848 1.1614 44 1 4.2707 1.0770 -0.2149 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081226853.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:30 Heat of formation + Delta-G solvation = -33.482143 kcal Electronic energy + Delta-G solvation = -24749.081909 eV Core-core repulsion = 21370.318592 eV Total energy + Delta-G solvation = -3378.763317 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.43334 -39.38358 -38.49234 -35.69766 -35.49974 -32.05190 -31.46631 -30.04354 -29.81632 -28.90996 -27.69462 -27.13104 -24.16463 -22.90105 -21.96628 -21.47168 -20.21396 -19.01505 -18.32538 -17.57832 -17.44319 -16.88104 -16.58391 -16.33561 -15.90881 -15.67431 -15.22950 -14.83015 -14.70186 -14.37505 -14.35433 -14.14821 -14.10339 -13.85553 -13.59470 -13.06335 -12.93985 -12.89533 -12.84241 -12.74444 -12.62858 -12.46922 -12.20676 -12.16103 -11.96515 -11.93216 -11.64691 -11.47862 -11.08139 -10.79860 -10.68993 -9.72080 -9.43164 -9.31273 -8.68936 -8.59137 -6.37980 0.47543 0.73667 1.00975 1.42756 1.50523 1.53645 1.65180 1.87255 2.03547 2.23294 2.75297 3.35759 3.45208 3.64950 3.79797 4.00253 4.17754 4.22045 4.30069 4.32134 4.33209 4.38319 4.39746 4.42231 4.53081 4.59824 4.65755 4.75281 4.85564 4.88065 4.93039 4.97480 5.04228 5.11199 5.15140 5.21087 5.25609 5.34436 5.48570 5.66090 5.84352 5.95702 6.04313 6.27515 6.32668 6.58818 6.92144 6.93501 7.15206 8.36705 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.012506 B = 0.003990 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.407863 B = 7016.375707 C = 8721.239666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 S -0.310 6.310 3 C -0.043 4.043 4 H 0.102 0.898 5 C -0.101 4.101 6 C -0.124 4.124 7 C 0.135 3.865 8 H 0.082 0.918 9 N -0.598 5.598 10 C 0.081 3.919 11 C 0.565 3.435 12 O -0.589 6.589 13 C -0.135 4.135 14 C -0.195 4.195 15 C -0.100 4.100 16 C -0.214 4.214 17 C 0.070 3.930 18 C -0.492 4.492 19 H 0.081 0.919 20 C 0.039 3.961 21 N -0.836 5.836 22 Si 0.979 3.021 23 H -0.254 1.254 24 H -0.273 1.273 25 H -0.264 1.264 26 C -0.131 4.131 27 C -0.107 4.107 28 H 0.091 0.909 29 H 0.108 0.892 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.049 0.951 36 H 0.069 0.931 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.129 0.871 40 H 0.109 0.891 41 H 0.287 0.713 42 H 0.133 0.867 43 H 0.067 0.933 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.755 -5.141 -5.067 17.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 S -0.083 6.083 3 C -0.172 4.172 4 H 0.120 0.880 5 C -0.141 4.141 6 C -0.164 4.164 7 C 0.031 3.969 8 H 0.100 0.900 9 N -0.328 5.328 10 C -0.061 4.061 11 C 0.356 3.644 12 O -0.471 6.471 13 C -0.138 4.138 14 C -0.215 4.215 15 C -0.118 4.118 16 C -0.234 4.234 17 C 0.068 3.932 18 C -0.522 4.522 19 H 0.099 0.901 20 C -0.175 4.175 21 N -0.462 5.462 22 Si 0.801 3.199 23 H -0.178 1.178 24 H -0.198 1.198 25 H -0.188 1.188 26 C -0.150 4.150 27 C -0.147 4.147 28 H 0.110 0.890 29 H 0.127 0.873 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.116 0.884 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.147 0.853 40 H 0.127 0.873 41 H 0.097 0.903 42 H 0.151 0.849 43 H 0.086 0.914 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.774 -6.608 -5.408 17.064 hybrid contribution -0.248 0.868 0.892 1.269 sum -15.022 -5.740 -4.516 16.703 Atomic orbital electron populations 1.23416 0.90959 1.07333 1.05995 1.87174 1.11023 1.12058 1.98006 1.23929 0.98194 0.92837 1.02213 0.88003 1.22789 1.00483 0.95875 0.94956 1.22755 0.93128 0.98828 1.01673 1.21830 0.96055 0.86166 0.92822 0.90002 1.47813 1.13881 1.37110 1.34014 1.22041 0.96880 0.98788 0.88361 1.18885 0.81372 0.83002 0.81159 1.90623 1.60327 1.59491 1.36646 1.19733 1.03186 0.95968 0.94943 1.20604 1.05215 0.97033 0.98692 1.20810 0.99421 0.97367 0.94187 1.21452 1.04499 1.02690 0.94736 1.17955 0.89505 0.91710 0.94022 1.19767 1.45485 0.94449 0.92481 0.90131 1.26653 0.91996 0.93954 1.04887 1.69825 1.36499 0.99808 1.40114 0.85280 0.79961 0.78421 0.76279 1.17821 1.19768 1.18847 1.21862 1.01771 1.00635 0.90774 1.22238 0.94218 0.97692 1.00557 0.89045 0.87302 0.89726 0.89877 0.88433 0.90202 0.89581 0.93245 0.91240 0.88057 0.87906 0.85348 0.87319 0.90284 0.84918 0.91383 0.91335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 10.72 113.37 1.22 -0.10 16 2 S -0.31 -6.37 21.64 -56.49 -1.22 -7.59 16 3 C -0.04 -0.84 3.36 31.67 0.11 -0.74 16 4 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 5 C -0.10 -1.63 6.30 31.88 0.20 -1.43 16 6 C -0.12 -2.55 6.32 31.71 0.20 -2.35 16 7 C 0.14 3.93 3.30 45.75 0.15 4.08 16 8 H 0.08 2.78 6.96 -2.39 -0.02 2.76 16 9 N -0.60 -21.17 2.75 -821.70 -2.26 -23.43 16 10 C 0.08 2.56 7.79 127.77 0.99 3.55 16 11 C 0.56 25.43 7.32 86.80 0.64 26.07 16 12 O -0.59 -29.51 16.30 -3.85 -0.06 -29.57 16 13 C -0.14 -6.47 5.15 -20.13 -0.10 -6.57 16 14 C -0.20 -8.99 9.65 22.70 0.22 -8.77 16 15 C -0.10 -4.33 10.01 22.17 0.22 -4.11 16 16 C -0.21 -10.04 9.78 22.77 0.22 -9.82 16 17 C 0.07 3.59 5.54 -21.32 -0.12 3.47 16 18 C -0.49 -24.76 9.06 23.47 0.21 -24.55 16 19 H 0.08 3.87 7.87 -2.91 -0.02 3.85 16 20 C 0.04 1.84 5.25 85.26 0.45 2.29 16 21 N -0.84 -41.88 10.86 21.82 0.24 -41.64 16 22 Si 0.98 36.04 29.57 68.60 2.03 38.07 16 23 H -0.25 -8.90 7.11 99.48 0.71 -8.19 16 24 H -0.27 -9.72 7.11 99.48 0.71 -9.02 16 25 H -0.26 -9.59 7.11 99.48 0.71 -8.89 16 26 C -0.13 -6.47 6.23 23.01 0.14 -6.33 16 27 C -0.11 -2.85 5.88 31.32 0.18 -2.67 16 28 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.08 1.38 8.06 -2.38 -0.02 1.36 16 32 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.09 1.65 6.19 -2.39 -0.01 1.63 16 35 H 0.05 1.70 6.79 -2.39 -0.02 1.68 16 36 H 0.07 2.45 6.01 -2.39 -0.01 2.44 16 37 H 0.10 2.31 6.34 -2.39 -0.02 2.29 16 38 H 0.10 4.51 8.06 -2.91 -0.02 4.49 16 39 H 0.13 4.61 8.06 -2.91 -0.02 4.59 16 40 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 41 H 0.29 13.23 8.30 -92.71 -0.77 12.46 16 42 H 0.13 6.57 3.72 -2.91 -0.01 6.56 16 43 H 0.07 2.02 7.36 -2.39 -0.02 2.01 16 44 H 0.07 1.96 7.80 -2.39 -0.02 1.94 16 Total: -1.00 -62.87 362.52 4.65 -58.22 By element: Atomic # 1 Polarization: 32.91 SS G_CDS: 1.00 Total: 33.91 kcal Atomic # 6 Polarization: -32.90 SS G_CDS: 4.93 Total: -27.96 kcal Atomic # 7 Polarization: -63.05 SS G_CDS: -2.02 Total: -65.07 kcal Atomic # 8 Polarization: -29.51 SS G_CDS: -0.06 Total: -29.57 kcal Atomic # 14 Polarization: 36.04 SS G_CDS: 2.03 Total: 38.07 kcal Atomic # 16 Polarization: -6.37 SS G_CDS: -1.22 Total: -7.59 kcal Total: -62.87 4.65 -58.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081226853.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.735 kcal (2) G-P(sol) polarization free energy of solvation -62.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds