Wall clock time and date at job start Tue Mar 31 2020 12:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81404 * 102.99861 * 2 1 4 4 C 1.50696 * 109.47095 * 180.02562 * 3 2 1 5 5 C 1.38360 * 119.85608 * 89.99813 * 4 3 2 6 6 C 1.37959 * 120.14366 * 179.97438 * 5 4 3 7 7 C 1.39577 * 119.85677 * 0.02602 * 6 5 4 8 8 C 1.47845 * 120.14443 * 179.97438 * 7 6 5 9 9 O 1.21548 * 120.00188 * 22.60707 * 8 7 6 10 10 N 1.34780 * 119.99385 * 202.60678 * 8 7 6 11 11 C 1.46500 * 119.99609 * 182.02465 * 10 8 7 12 12 C 1.50696 * 109.47232 * 270.00143 * 11 10 8 13 13 H 1.08003 * 119.99999 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00281 * 180.02562 * 12 11 10 15 15 N 1.31515 * 119.99706 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00164 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47056 * 89.99876 * 16 14 12 18 18 H 1.48494 * 109.47321 * 210.00017 * 16 14 12 19 19 H 1.48501 * 109.47111 * 330.00129 * 16 14 12 20 20 C 1.46494 * 120.00399 * 2.02166 * 10 8 7 21 21 C 1.52998 * 109.47363 * 259.87184 * 20 10 8 22 22 C 1.53004 * 117.49905 * 243.62121 * 21 20 10 23 23 C 1.52996 * 59.99997 * 252.51200 * 22 21 20 24 24 C 1.39581 * 119.70809 * 0.24946 * 7 6 5 25 25 C 1.37961 * 119.84968 * 359.47179 * 24 7 6 26 26 H 1.08997 * 109.46934 * 299.99604 * 1 2 3 27 27 H 1.09002 * 109.47152 * 60.00100 * 1 2 3 28 28 H 1.08998 * 109.47004 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46936 * 60.00127 * 3 2 1 30 30 H 1.09005 * 109.47136 * 300.00235 * 3 2 1 31 31 H 1.08003 * 119.92806 * 359.97438 * 5 4 3 32 32 H 1.08002 * 120.07350 * 179.97438 * 6 5 4 33 33 H 1.09003 * 109.47327 * 29.99742 * 11 10 8 34 34 H 1.08999 * 109.47079 * 149.99730 * 11 10 8 35 35 H 0.97002 * 119.99231 * 179.97438 * 15 14 12 36 36 H 1.09000 * 109.47075 * 139.86831 * 20 10 8 37 37 H 1.08995 * 109.47204 * 19.87654 * 20 10 8 38 38 H 1.09000 * 115.55166 * 29.32752 * 21 20 10 39 39 H 1.08994 * 117.49671 * 0.02562 * 22 21 20 40 40 H 1.09000 * 117.49496 * 145.02228 * 22 21 20 41 41 H 1.08998 * 117.49882 * 252.51120 * 23 22 21 42 42 H 1.09000 * 117.50168 * 107.49436 * 23 22 21 43 43 H 1.08000 * 120.07241 * 179.72416 * 24 7 6 44 44 H 1.08001 * 119.92020 * 180.27563 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 3.7194 1.9374 -0.0006 5 6 4.4033 2.0152 -1.2009 6 6 5.7740 2.1712 -1.2084 7 6 6.4710 2.2501 -0.0017 8 6 7.9400 2.4168 -0.0023 9 8 8.4979 2.8874 -0.9742 10 7 8.6605 2.0468 1.0750 11 6 10.1109 2.2528 1.0920 12 6 10.7978 1.0355 0.5287 13 1 10.2126 0.1925 0.1920 14 6 12.1734 0.9975 0.4440 15 7 12.8861 2.0238 0.8544 16 14 13.0249 -0.5116 -0.2537 17 1 13.1870 -0.3544 -1.7214 18 1 14.3601 -0.6632 0.3783 19 1 12.2046 -1.7171 0.0274 20 6 7.9934 1.4387 2.2288 21 6 7.7950 2.4946 3.3181 22 6 8.5219 2.2832 4.6477 23 6 7.0072 2.0849 4.5640 24 6 5.7756 2.1652 1.2056 25 6 4.4042 2.0150 1.1991 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8031 2.2371 0.8900 30 1 1.8030 2.2372 -0.8900 31 1 3.8628 1.9535 -2.1340 32 1 6.3067 2.2313 -2.1460 33 1 10.3613 3.1240 0.4866 34 1 10.4427 2.4154 2.1174 35 1 13.8539 1.9969 0.7951 36 1 8.6080 0.6267 2.6175 37 1 7.0239 1.0459 1.9226 38 1 7.6801 3.5192 2.9644 39 1 9.1418 1.3921 4.7462 40 1 8.8855 3.1688 5.1689 41 1 6.3742 2.8400 5.0301 42 1 6.6302 1.0631 4.6077 43 1 6.3095 2.2211 2.1427 44 1 3.8645 1.9537 2.1326 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103438155.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:51 Heat of formation + Delta-G solvation = 42.295404 kcal Electronic energy + Delta-G solvation = -24273.242937 eV Core-core repulsion = 20897.765581 eV Total energy + Delta-G solvation = -3375.477356 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.27518 -38.20430 -37.32293 -34.45574 -33.19603 -32.33205 -30.96972 -29.37893 -28.30231 -27.25132 -26.10685 -23.33445 -22.66215 -22.12525 -21.52343 -20.72163 -19.02074 -17.01133 -16.67849 -16.45967 -16.16602 -15.55042 -15.19444 -14.85381 -14.66367 -14.34321 -14.26213 -14.01889 -13.97030 -13.55850 -13.45899 -13.32960 -12.77374 -12.68804 -12.40586 -12.13495 -11.83855 -11.48371 -11.41650 -11.31773 -11.21827 -10.90137 -10.63355 -10.51941 -10.35060 -10.30317 -10.10735 -9.84077 -9.60259 -9.02726 -8.82050 -8.55907 -8.40846 -7.95929 -7.69186 -6.02284 -4.06540 0.70633 1.44345 1.66694 2.30281 3.33267 3.36841 3.39428 3.42716 3.73866 3.93510 4.17128 4.42287 4.47353 4.56539 4.77542 4.79882 4.82176 4.92689 5.00235 5.04608 5.11649 5.19628 5.24830 5.32547 5.34055 5.51298 5.59893 5.63131 5.71850 5.77312 5.89909 5.99925 6.05852 6.10166 6.26698 6.33900 6.44876 6.47988 6.53093 6.92986 7.12206 7.44858 7.53788 7.94187 8.25293 8.38620 8.90467 9.06502 9.58203 11.05871 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.014563 B = 0.003319 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.264592 B = 8433.346063 C = 9287.903028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 S -0.250 6.250 3 C -0.043 4.043 4 C -0.068 4.068 5 C -0.111 4.111 6 C -0.066 4.066 7 C -0.112 4.112 8 C 0.543 3.457 9 O -0.534 6.534 10 N -0.583 5.583 11 C 0.248 3.752 12 C -0.525 4.525 13 H 0.057 0.943 14 C 0.062 3.938 15 N -0.895 5.895 16 Si 0.897 3.103 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.274 1.274 20 C 0.112 3.888 21 C -0.177 4.177 22 C -0.166 4.166 23 C -0.182 4.182 24 C -0.124 4.124 25 C -0.111 4.111 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.100 0.900 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.126 0.874 32 H 0.135 0.865 33 H 0.043 0.957 34 H 0.037 0.963 35 H 0.263 0.737 36 H 0.080 0.920 37 H 0.099 0.901 38 H 0.107 0.893 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.171 0.829 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.772 -0.500 4.723 24.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 S -0.022 6.022 3 C -0.190 4.190 4 C -0.070 4.070 5 C -0.131 4.131 6 C -0.085 4.085 7 C -0.116 4.116 8 C 0.330 3.670 9 O -0.412 6.412 10 N -0.313 5.313 11 C 0.129 3.871 12 C -0.564 4.564 13 H 0.076 0.924 14 C -0.140 4.140 15 N -0.534 5.534 16 Si 0.725 3.275 17 H -0.205 1.205 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.012 4.012 21 C -0.196 4.196 22 C -0.203 4.203 23 C -0.220 4.220 24 C -0.141 4.141 25 C -0.131 4.131 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.119 0.881 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.144 0.856 32 H 0.153 0.847 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.072 0.928 36 H 0.099 0.901 37 H 0.116 0.884 38 H 0.125 0.875 39 H 0.117 0.883 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.114 0.886 43 H 0.187 0.813 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -22.621 -1.086 4.233 23.039 hybrid contribution -0.296 0.206 -0.349 0.502 sum -22.917 -0.880 3.884 23.261 Atomic orbital electron populations 1.23414 0.94956 1.06488 1.04779 1.87378 1.06291 1.10521 1.98010 1.22326 0.96203 0.94895 1.05619 1.19291 0.92669 1.00922 0.94124 1.20924 0.94027 1.00808 0.97321 1.21263 0.93504 0.95668 0.98074 1.20365 0.94567 1.02525 0.94152 1.18220 0.85834 0.79497 0.83467 1.90750 1.71984 1.45336 1.33176 1.48082 1.10348 1.58619 1.14207 1.19309 0.71995 0.97861 0.97962 1.21429 0.91481 1.01819 1.41690 0.92448 1.24919 0.97256 0.96488 0.95373 1.69938 1.06253 1.29960 1.47233 0.86512 0.78707 0.82941 0.79360 1.20539 1.21167 1.19907 1.21873 0.99154 0.94283 0.85848 1.22839 1.05619 1.01110 0.90039 1.22990 0.94062 1.03632 0.99612 1.22998 0.94950 1.02562 1.01471 1.22749 0.94450 0.97056 0.99881 1.20960 0.94092 1.00831 0.97177 0.90564 0.90571 0.88102 0.89153 0.89198 0.85603 0.84715 0.93890 0.94542 0.92756 0.90136 0.88386 0.87488 0.88252 0.88930 0.88863 0.88579 0.81259 0.85626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.78 10.76 101.05 1.09 0.31 16 2 S -0.25 -2.44 22.36 -107.50 -2.40 -4.84 16 3 C -0.04 -0.37 6.06 36.00 0.22 -0.15 16 4 C -0.07 -0.78 5.15 -104.54 -0.54 -1.31 16 5 C -0.11 -1.38 9.68 -39.64 -0.38 -1.77 16 6 C -0.07 -1.03 9.59 -39.18 -0.38 -1.40 16 7 C -0.11 -1.93 5.62 -104.97 -0.59 -2.52 16 8 C 0.54 11.92 7.53 -12.33 -0.09 11.83 16 9 O -0.53 -13.95 16.16 5.32 0.09 -13.86 16 10 N -0.58 -12.61 2.47 -176.18 -0.44 -13.04 16 11 C 0.25 6.51 5.14 -5.20 -0.03 6.49 16 12 C -0.53 -15.05 9.39 -34.44 -0.32 -15.38 16 13 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 14 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 15 N -0.89 -26.71 13.29 55.43 0.74 -25.97 16 16 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 17 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 20 C 0.11 1.87 5.12 -4.05 -0.02 1.85 16 21 C -0.18 -2.47 4.03 -90.62 -0.37 -2.84 16 22 C -0.17 -2.14 10.18 -26.73 -0.27 -2.42 16 23 C -0.18 -1.94 9.97 -26.73 -0.27 -2.21 16 24 C -0.12 -1.73 7.54 -39.18 -0.30 -2.03 16 25 C -0.11 -1.29 9.68 -39.64 -0.38 -1.68 16 26 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.08 0.39 8.14 -51.92 -0.42 -0.03 16 28 H 0.10 0.54 8.14 -51.92 -0.42 0.12 16 29 H 0.09 0.65 8.08 -51.92 -0.42 0.23 16 30 H 0.09 0.66 8.08 -51.92 -0.42 0.24 16 31 H 0.13 1.29 8.06 -52.48 -0.42 0.86 16 32 H 0.13 2.15 7.82 -52.49 -0.41 1.74 16 33 H 0.04 1.28 7.45 -51.93 -0.39 0.89 16 34 H 0.04 0.96 8.07 -51.93 -0.42 0.55 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.08 1.40 7.87 -51.93 -0.41 0.99 16 37 H 0.10 1.46 4.26 -51.93 -0.22 1.24 16 38 H 0.11 1.58 8.13 -51.93 -0.42 1.16 16 39 H 0.10 1.34 8.03 -51.93 -0.42 0.92 16 40 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.17 2.23 2.33 -52.49 -0.12 2.11 16 44 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 377.25 15.07 5.69 5.69 Total: -1.00 -33.38 377.25 -10.65 -44.03 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -6.57 Total: 2.45 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: -2.73 Total: -11.55 kcal Atomic # 7 Polarization: -39.32 SS G_CDS: 0.30 Total: -39.02 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: 0.09 Total: -13.86 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Atomic # 16 Polarization: -2.44 SS G_CDS: -2.40 Total: -4.84 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.38 -10.65 -44.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103438155.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.328 kcal (2) G-P(sol) polarization free energy of solvation -33.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds