Wall clock time and date at job start Tue Mar 31 2020 12:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81404 * 103.00163 * 2 1 4 4 C 1.50697 * 109.46969 * 179.97438 * 3 2 1 5 5 C 1.38374 * 119.84847 * 269.71837 * 4 3 2 6 6 C 1.37935 * 120.15509 * 179.76902 * 5 4 3 7 7 C 1.39644 * 119.84154 * 0.53154 * 6 5 4 8 8 C 1.47732 * 120.14895 * 179.69760 * 7 6 5 9 9 O 1.21591 * 119.99989 * 239.80332 * 8 7 6 10 10 N 1.34778 * 119.99559 * 59.80903 * 8 7 6 11 11 C 1.36879 * 120.00014 * 87.22724 * 10 8 7 12 12 H 1.07994 * 119.99751 * 326.10381 * 11 10 8 13 13 C 1.39039 * 119.99710 * 146.10067 * 11 10 8 14 14 N 1.31363 * 120.00491 * 354.27820 * 13 11 10 15 15 Si 1.86806 * 119.99853 * 174.28047 * 13 11 10 16 16 H 1.48503 * 109.47077 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47515 * 120.00134 * 15 13 11 18 18 H 1.48508 * 109.47003 * 240.00027 * 15 13 11 19 19 C 1.46494 * 120.00119 * 267.22579 * 10 8 7 20 20 C 1.54262 * 110.03397 * 117.14489 * 19 10 8 21 21 C 1.54973 * 104.15913 * 217.13920 * 20 19 10 22 22 C 1.54882 * 102.77838 * 37.88912 * 21 20 19 23 23 C 1.53874 * 110.03289 * 359.92550 * 19 10 8 24 24 C 1.39646 * 119.70218 * 359.72710 * 7 6 5 25 25 C 1.37935 * 119.84660 * 359.97438 * 24 7 6 26 26 H 1.08996 * 109.47004 * 60.00148 * 1 2 3 27 27 H 1.09005 * 109.47029 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47043 * 299.99654 * 1 2 3 29 29 H 1.08998 * 109.46995 * 59.99857 * 3 2 1 30 30 H 1.08994 * 109.46804 * 299.99982 * 3 2 1 31 31 H 1.08005 * 119.92522 * 0.02562 * 5 4 3 32 32 H 1.07997 * 120.07956 * 180.23713 * 6 5 4 33 33 H 0.96999 * 120.00452 * 185.02560 * 14 13 11 34 34 H 1.09002 * 110.02067 * 238.53591 * 19 10 8 35 35 H 1.09003 * 110.48937 * 335.78025 * 20 19 10 36 36 H 1.08998 * 110.49345 * 98.42713 * 20 19 10 37 37 H 1.08996 * 110.71672 * 279.57062 * 21 20 19 38 38 H 1.09000 * 110.92035 * 156.29665 * 21 20 19 39 39 H 1.09003 * 110.48762 * 203.40982 * 22 21 20 40 40 H 1.08991 * 110.60191 * 80.81400 * 22 21 20 41 41 H 1.08997 * 110.03983 * 238.57156 * 23 19 10 42 42 H 1.09009 * 110.03208 * 359.95384 * 23 19 10 43 43 H 1.08004 * 120.08083 * 180.02562 * 24 7 6 44 44 H 1.07995 * 119.92920 * 180.02562 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7195 1.9373 0.0006 5 6 4.4026 2.0209 1.2011 6 6 5.7737 2.1715 1.2091 7 6 6.4711 2.2508 0.0019 8 6 7.9388 2.4189 0.0025 9 8 8.4395 3.3920 -0.5273 10 7 8.7227 1.4934 0.5902 11 6 9.1425 0.4012 -0.1201 12 1 8.4999 -0.0341 -0.8710 13 6 10.3961 -0.1478 0.1253 14 7 11.2221 0.4461 0.9565 15 14 10.9060 -1.7299 -0.7270 16 1 9.8039 -2.1958 -1.6065 17 1 12.1211 -1.4827 -1.5440 18 1 11.1982 -2.7695 0.2926 19 6 9.1256 1.6563 1.9892 20 6 8.5612 0.4997 2.8398 21 6 8.1823 1.1686 4.1854 22 6 7.6243 2.5430 3.7397 23 6 8.5307 2.9550 2.5612 24 6 5.7748 2.1712 -1.2060 25 6 4.4044 2.0143 -1.1993 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8032 2.2371 0.8900 30 1 1.8032 2.2371 -0.8900 31 1 3.8615 1.9638 2.1341 32 1 6.3060 2.2327 2.1467 33 1 12.1225 0.1045 1.0724 34 1 10.2128 1.6790 2.0643 35 1 7.6782 0.0722 2.3647 36 1 9.3210 -0.2663 2.9944 37 1 9.0632 1.2950 4.8147 38 1 7.4176 0.5915 4.7053 39 1 7.7007 3.2670 4.5509 40 1 6.5897 2.4483 3.4102 41 1 9.3290 3.6076 2.9146 42 1 7.9428 3.4645 1.7976 43 1 6.3080 2.2314 -2.1433 44 1 3.8646 1.9522 -2.1326 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125382165.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:52 Heat of formation + Delta-G solvation = 4.984255 kcal Electronic energy + Delta-G solvation = -25222.331776 eV Core-core repulsion = 21845.236487 eV Total energy + Delta-G solvation = -3377.095289 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.57000 -39.62542 -38.52025 -35.82359 -33.99134 -32.99849 -32.02511 -29.86178 -29.55378 -28.74505 -28.30329 -26.26763 -23.74387 -23.60506 -21.64877 -21.46824 -20.41878 -19.07426 -18.08816 -17.42646 -17.27960 -16.90240 -16.55495 -16.30249 -16.00125 -15.59395 -15.11617 -15.05307 -14.93042 -14.56708 -14.52491 -14.10194 -13.90551 -13.71109 -13.39452 -13.33962 -13.27905 -13.00947 -12.87437 -12.51745 -12.23559 -12.16911 -12.03186 -11.96641 -11.79415 -11.75002 -11.35396 -11.12119 -11.05377 -10.96388 -10.69300 -9.93108 -9.63798 -9.00762 -8.66045 -7.84785 -5.68570 -0.19414 0.43671 0.88639 1.30144 1.43214 1.45554 1.55406 1.73760 2.39062 2.80367 3.05629 3.22210 3.63296 3.74651 3.83775 3.90759 3.95789 4.05110 4.22359 4.28734 4.40198 4.40373 4.40898 4.53881 4.59018 4.62012 4.77973 4.81580 4.83896 4.94224 4.97775 5.01035 5.04965 5.16844 5.20173 5.28729 5.32342 5.45541 5.48171 5.51453 5.61657 5.68239 5.94618 6.00214 6.39341 6.74187 7.05528 7.72750 8.07675 9.04460 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.012917 B = 0.004240 C = 0.003867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.196274 B = 6601.807274 C = 7239.365699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 S -0.316 6.316 3 C -0.028 4.028 4 C -0.067 4.067 5 C -0.101 4.101 6 C -0.115 4.115 7 C -0.148 4.148 8 C 0.633 3.367 9 O -0.537 6.537 10 N -0.603 5.603 11 C -0.290 4.290 12 H 0.061 0.939 13 C -0.013 4.013 14 N -0.909 5.909 15 Si 0.968 3.032 16 H -0.269 1.269 17 H -0.286 1.286 18 H -0.279 1.279 19 C 0.163 3.837 20 C -0.110 4.110 21 C -0.114 4.114 22 C -0.120 4.120 23 C -0.147 4.147 24 C -0.101 4.101 25 C -0.101 4.101 26 H 0.088 0.912 27 H 0.106 0.894 28 H 0.090 0.910 29 H 0.112 0.888 30 H 0.109 0.891 31 H 0.156 0.844 32 H 0.155 0.845 33 H 0.257 0.743 34 H 0.084 0.916 35 H 0.049 0.951 36 H 0.036 0.964 37 H 0.068 0.932 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.061 0.939 42 H 0.042 0.958 43 H 0.115 0.885 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.178 1.679 4.391 21.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 S -0.088 6.088 3 C -0.175 4.175 4 C -0.068 4.068 5 C -0.120 4.120 6 C -0.133 4.133 7 C -0.153 4.153 8 C 0.427 3.573 9 O -0.412 6.412 10 N -0.336 5.336 11 C -0.417 4.417 12 H 0.079 0.921 13 C -0.211 4.211 14 N -0.552 5.552 15 Si 0.794 3.206 16 H -0.194 1.194 17 H -0.213 1.213 18 H -0.205 1.205 19 C 0.060 3.940 20 C -0.149 4.149 21 C -0.152 4.152 22 C -0.156 4.156 23 C -0.185 4.185 24 C -0.120 4.120 25 C -0.120 4.120 26 H 0.107 0.893 27 H 0.125 0.875 28 H 0.109 0.891 29 H 0.131 0.869 30 H 0.127 0.873 31 H 0.174 0.826 32 H 0.172 0.828 33 H 0.068 0.932 34 H 0.101 0.899 35 H 0.068 0.932 36 H 0.054 0.946 37 H 0.086 0.914 38 H 0.104 0.896 39 H 0.109 0.891 40 H 0.102 0.898 41 H 0.080 0.920 42 H 0.060 0.940 43 H 0.133 0.867 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -20.153 1.281 4.176 20.621 hybrid contribution 0.440 0.141 -0.924 1.033 sum -19.713 1.422 3.252 20.030 Atomic orbital electron populations 1.23441 0.90985 1.07332 1.06112 1.87714 1.10696 1.12216 1.98222 1.22286 0.93690 0.93874 1.07650 1.19568 0.94543 0.99460 0.93223 1.21227 0.92973 0.98937 0.98895 1.22183 0.95438 0.97629 0.98002 1.20880 0.94194 1.03994 0.96256 1.19020 0.87858 0.79376 0.71018 1.90579 1.78569 1.32539 1.39485 1.42350 1.56783 1.23953 1.10534 1.19061 0.98864 1.04579 1.19202 0.92126 1.25900 0.95166 1.01806 0.98240 1.69716 1.06080 1.42082 1.37310 0.85224 0.77960 0.79160 0.78243 1.19388 1.21282 1.20466 1.21664 1.00951 0.92066 0.79343 1.22498 0.98973 0.97825 0.95606 1.22472 1.00971 0.95714 0.96022 1.22597 0.98473 0.97788 0.96774 1.22731 0.99493 0.97761 0.98553 1.21212 0.95257 0.99188 0.96363 1.21111 0.92590 0.99296 0.99039 0.89276 0.87505 0.89105 0.86939 0.87302 0.82624 0.82819 0.93222 0.89877 0.93243 0.94559 0.91351 0.89625 0.89099 0.89781 0.92004 0.93951 0.86678 0.83167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 10.76 113.37 1.22 0.02 16 2 S -0.32 -6.33 22.36 -56.49 -1.26 -7.59 16 3 C -0.03 -0.47 6.06 71.23 0.43 -0.04 16 4 C -0.07 -1.61 5.15 -19.80 -0.10 -1.71 16 5 C -0.10 -2.62 9.68 22.23 0.22 -2.41 16 6 C -0.12 -3.88 9.27 22.54 0.21 -3.67 16 7 C -0.15 -6.02 5.69 -20.09 -0.11 -6.14 16 8 C 0.63 31.88 3.45 86.75 0.30 32.17 16 9 O -0.54 -30.17 17.74 -4.00 -0.07 -30.24 16 10 N -0.60 -31.91 2.60 -612.76 -1.60 -33.51 16 11 C -0.29 -16.43 9.08 84.10 0.76 -15.67 16 12 H 0.06 3.46 7.84 -2.91 -0.02 3.43 16 13 C -0.01 -0.70 5.27 84.96 0.45 -0.25 16 14 N -0.91 -52.32 10.51 21.68 0.23 -52.09 16 15 Si 0.97 44.78 29.56 68.60 2.03 46.81 16 16 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 17 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 18 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 19 C 0.16 7.79 2.86 45.72 0.13 7.92 16 20 C -0.11 -4.59 6.02 31.70 0.19 -4.40 16 21 C -0.11 -3.49 6.91 31.91 0.22 -3.26 16 22 C -0.12 -3.47 6.26 31.67 0.20 -3.28 16 23 C -0.15 -5.84 5.53 31.32 0.17 -5.67 16 24 C -0.10 -3.64 9.79 22.54 0.22 -3.42 16 25 C -0.10 -2.76 9.68 22.23 0.22 -2.54 16 26 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.11 1.39 8.08 -2.39 -0.02 1.37 16 30 H 0.11 1.41 8.08 -2.39 -0.02 1.39 16 31 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 32 H 0.16 5.03 2.29 -2.91 -0.01 5.03 16 33 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 34 H 0.08 4.68 5.50 -2.39 -0.01 4.67 16 35 H 0.05 2.14 8.05 -2.39 -0.02 2.12 16 36 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.08 2.23 5.10 -2.39 -0.01 2.22 16 41 H 0.06 2.40 8.14 -2.39 -0.02 2.39 16 42 H 0.04 1.80 4.67 -2.38 -0.01 1.79 16 43 H 0.12 4.21 8.06 -2.91 -0.02 4.19 16 44 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 Total: -1.00 -71.25 362.77 5.04 -66.20 By element: Atomic # 1 Polarization: 21.76 SS G_CDS: 1.00 Total: 22.76 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: 4.72 Total: -12.35 kcal Atomic # 7 Polarization: -84.23 SS G_CDS: -1.37 Total: -85.60 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -0.07 Total: -30.24 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Atomic # 16 Polarization: -6.33 SS G_CDS: -1.26 Total: -7.59 kcal Total: -71.25 5.04 -66.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125382165.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.187 kcal (2) G-P(sol) polarization free energy of solvation -71.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds