Wall clock time and date at job start Tue Mar 31 2020 12:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81401 * 103.00050 * 2 1 4 4 H 1.08996 * 109.47015 * 55.00093 * 3 2 1 5 5 C 1.53000 * 109.47222 * 295.00354 * 3 2 1 6 6 C 1.52998 * 109.47024 * 180.02562 * 5 3 2 7 7 C 1.52994 * 109.47625 * 59.99815 * 6 5 3 8 8 C 1.53000 * 109.47071 * 300.00157 * 7 6 5 9 9 H 1.08998 * 109.47268 * 179.97438 * 8 7 6 10 10 N 1.46498 * 109.46968 * 299.99607 * 8 7 6 11 11 C 1.34771 * 120.00205 * 275.00039 * 10 8 7 12 12 O 1.21550 * 120.00143 * 0.02562 * 11 10 8 13 13 C 1.47888 * 120.00028 * 180.02562 * 11 10 8 14 14 C 1.39923 * 120.02660 * 359.97438 * 13 11 10 15 15 C 1.38328 * 120.35741 * 180.02562 * 14 13 11 16 16 C 1.37750 * 120.41335 * 359.97438 * 15 14 13 17 17 C 1.40747 * 120.04155 * 0.02562 * 16 15 14 18 18 C 1.41437 * 120.17790 * 180.02562 * 17 16 15 19 19 H 1.07998 * 119.99790 * 335.64106 * 18 17 16 20 20 C 1.39943 * 119.99888 * 155.64682 * 18 17 16 21 21 N 1.30826 * 119.99736 * 342.27001 * 20 18 17 22 22 Si 1.86799 * 119.99857 * 162.26929 * 20 18 17 23 23 H 1.48496 * 109.46875 * 179.97438 * 22 20 18 24 24 H 1.48499 * 109.47108 * 299.99890 * 22 20 18 25 25 H 1.48506 * 109.46824 * 59.99929 * 22 20 18 26 26 C 1.38998 * 120.02300 * 180.29943 * 13 11 10 27 27 C 1.53000 * 109.47169 * 174.99974 * 3 2 1 28 28 H 1.09001 * 109.47014 * 59.99438 * 1 2 3 29 29 H 1.08994 * 109.47174 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46652 * 300.00072 * 1 2 3 31 31 H 1.08998 * 109.47268 * 59.99733 * 5 3 2 32 32 H 1.09006 * 109.46911 * 299.99807 * 5 3 2 33 33 H 1.09006 * 109.46969 * 299.99588 * 6 5 3 34 34 H 1.09007 * 109.47152 * 180.02562 * 6 5 3 35 35 H 1.08995 * 109.47832 * 179.97438 * 7 6 5 36 36 H 1.09006 * 109.47132 * 59.99873 * 7 6 5 37 37 H 0.97005 * 119.99615 * 94.99905 * 10 8 7 38 38 H 1.08001 * 119.81509 * 0.02562 * 14 13 11 39 39 H 1.08001 * 119.78918 * 180.02562 * 15 14 13 40 40 H 1.08001 * 119.97624 * 180.02562 * 16 15 14 41 41 H 0.97008 * 119.99470 * 180.02562 * 21 20 18 42 42 H 1.07998 * 120.20777 * 359.97438 * 26 13 11 43 43 H 1.09006 * 109.46712 * 60.00566 * 27 3 2 44 44 H 1.08998 * 109.47337 * 300.00433 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 0.8418 5 6 1.7427 2.4016 -1.3073 6 6 2.0875 3.8923 -1.3075 7 6 3.6024 4.0654 -1.1821 8 6 4.0818 3.4313 0.1252 9 1 5.1611 3.5543 0.2143 10 7 3.4202 4.0858 1.2566 11 6 3.9313 5.2218 1.7709 12 8 4.9409 5.7038 1.2957 13 6 3.2637 5.8821 2.9135 14 6 2.1012 5.3281 3.4607 15 6 1.4709 5.9403 4.5291 16 6 1.9802 7.1016 5.0670 17 6 3.1487 7.6736 4.5300 18 6 3.6745 8.8657 5.0804 19 1 3.0271 9.5452 5.6147 20 6 5.0337 9.1646 4.9326 21 7 5.8793 8.2209 4.6073 22 14 5.6403 10.9110 5.2000 23 1 7.1087 10.9632 4.9850 24 1 4.9662 11.8215 4.2399 25 1 5.3282 11.3363 6.5882 26 6 3.7869 7.0572 3.4403 27 6 3.7370 1.9412 0.1257 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.6635 2.2779 -1.3969 32 1 2.2354 1.9150 -2.1492 33 1 1.5952 4.3792 -0.4656 34 1 1.7456 4.3441 -2.2387 35 1 3.8481 5.1273 -1.1828 36 1 4.0947 3.5785 -2.0240 37 1 2.6143 3.7013 1.6356 38 1 1.6938 4.4176 3.0465 39 1 0.5743 5.5045 4.9445 40 1 1.4827 7.5734 5.9014 41 1 6.8215 8.4281 4.5052 42 1 4.6813 7.4910 3.0181 43 1 4.2295 1.4546 -0.7162 44 1 4.0785 1.4894 1.0570 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172200852.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:33 Heat of formation + Delta-G solvation = -41.188471 kcal Electronic energy + Delta-G solvation = -24480.533658 eV Core-core repulsion = 21101.436170 eV Total energy + Delta-G solvation = -3379.097488 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.95353 -38.08831 -36.80015 -33.82932 -33.35090 -31.04014 -30.74043 -29.55431 -29.38201 -28.70168 -25.32871 -23.31140 -22.86127 -22.25324 -20.96806 -19.96702 -18.99800 -17.87547 -16.75525 -16.22408 -15.57854 -15.40289 -15.15177 -14.85772 -14.68413 -14.27306 -13.98270 -13.84751 -13.53213 -13.47382 -13.21289 -12.94139 -12.78142 -12.51248 -12.35105 -12.19976 -12.00785 -11.74378 -11.64505 -11.17146 -11.09981 -10.92445 -10.77606 -10.66690 -10.53105 -10.31306 -10.03804 -9.91993 -9.71248 -9.22375 -9.01706 -8.65751 -7.91356 -7.64576 -7.53957 -6.81518 -4.43044 1.44425 2.20133 2.33516 2.80768 3.06526 3.08159 3.15402 3.66010 3.85687 3.90964 4.41304 4.42995 4.62646 4.78660 4.86543 4.89540 4.97062 5.03364 5.15443 5.24119 5.36353 5.46202 5.50284 5.59469 5.63187 5.75032 5.79283 5.82245 6.00201 6.04945 6.14550 6.22348 6.25339 6.26119 6.70417 6.88732 6.97613 7.00792 7.19781 7.36567 7.68263 7.74375 7.90920 8.08154 8.17748 8.48896 8.78634 8.81913 8.95326 10.13080 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.021952 B = 0.003046 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.219413 B = 9191.070653 C = 9885.684897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.267 6.267 3 C -0.050 4.050 4 H 0.087 0.913 5 C -0.111 4.111 6 C -0.116 4.116 7 C -0.131 4.131 8 C 0.153 3.847 9 H 0.092 0.908 10 N -0.731 5.731 11 C 0.565 3.435 12 O -0.545 6.545 13 C -0.128 4.128 14 C -0.219 4.219 15 C -0.097 4.097 16 C -0.213 4.213 17 C 0.099 3.901 18 C -0.460 4.460 19 H 0.081 0.919 20 C 0.073 3.927 21 N -0.782 5.782 22 Si 0.911 3.089 23 H -0.277 1.277 24 H -0.263 1.263 25 H -0.265 1.265 26 C -0.092 4.092 27 C -0.106 4.106 28 H 0.076 0.924 29 H 0.098 0.902 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.396 0.604 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.285 0.715 42 H 0.134 0.866 43 H 0.085 0.915 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.337 -12.026 -10.204 17.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.039 6.039 3 C -0.179 4.179 4 H 0.105 0.895 5 C -0.151 4.151 6 C -0.156 4.156 7 C -0.170 4.170 8 C 0.046 3.954 9 H 0.110 0.890 10 N -0.385 5.385 11 C 0.356 3.644 12 O -0.423 6.423 13 C -0.131 4.131 14 C -0.239 4.239 15 C -0.115 4.115 16 C -0.233 4.233 17 C 0.097 3.903 18 C -0.489 4.489 19 H 0.099 0.901 20 C -0.146 4.146 21 N -0.406 5.406 22 Si 0.735 3.265 23 H -0.202 1.202 24 H -0.187 1.187 25 H -0.190 1.190 26 C -0.112 4.112 27 C -0.145 4.145 28 H 0.095 0.905 29 H 0.117 0.883 30 H 0.096 0.904 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.232 0.768 38 H 0.104 0.896 39 H 0.110 0.890 40 H 0.113 0.887 41 H 0.096 0.904 42 H 0.152 0.848 43 H 0.103 0.897 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.675 -12.668 -10.563 17.443 hybrid contribution -1.019 1.428 0.424 1.805 sum -6.694 -11.240 -10.138 16.551 Atomic orbital electron populations 1.23387 0.94282 1.06288 1.05048 1.86838 1.07356 1.11721 1.97941 1.23206 1.00331 0.92920 1.01401 0.89502 1.21867 1.00702 0.96295 0.96205 1.21524 0.96672 0.95024 1.02337 1.21941 0.95681 1.02256 0.97125 1.20793 0.98550 0.89863 0.86171 0.88960 1.46078 1.30766 1.27123 1.34555 1.18837 0.83486 0.79472 0.82618 1.90691 1.25183 1.64390 1.62033 1.19482 0.97566 0.98589 0.97463 1.20299 0.99024 1.01825 1.02780 1.20421 0.98337 0.96251 0.96527 1.21089 1.01523 0.98097 1.02565 1.17597 0.90732 0.92134 0.89853 1.19565 0.93615 1.04553 1.31174 0.90118 1.25969 0.96908 0.98967 0.92754 1.69785 1.04491 1.33546 1.32815 0.86323 0.77998 0.82317 0.79882 1.20202 1.18715 1.18960 1.21641 1.00474 0.93976 0.95137 1.21649 0.92545 0.96255 1.04039 0.90465 0.88280 0.90399 0.92023 0.90674 0.91431 0.91638 0.90824 0.91241 0.76805 0.89552 0.88996 0.88654 0.90356 0.84848 0.89667 0.90203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.90 10.45 101.05 1.06 0.15 16 2 S -0.27 -2.68 21.79 -107.50 -2.34 -5.02 16 3 C -0.05 -0.49 2.48 -26.73 -0.07 -0.56 16 4 H 0.09 0.90 6.51 -51.93 -0.34 0.56 16 5 C -0.11 -1.00 5.11 -26.73 -0.14 -1.14 16 6 C -0.12 -1.22 5.76 -26.74 -0.15 -1.37 16 7 C -0.13 -1.58 5.60 -26.73 -0.15 -1.73 16 8 C 0.15 2.03 2.78 -67.96 -0.19 1.84 16 9 H 0.09 1.39 7.58 -51.93 -0.39 1.00 16 10 N -0.73 -11.56 4.18 -54.76 -0.23 -11.79 16 11 C 0.57 12.00 7.74 -12.31 -0.10 11.91 16 12 O -0.55 -13.28 16.00 5.32 0.09 -13.19 16 13 C -0.13 -2.97 5.87 -105.03 -0.62 -3.59 16 14 C -0.22 -4.54 9.55 -38.92 -0.37 -4.92 16 15 C -0.10 -2.05 10.01 -39.73 -0.40 -2.45 16 16 C -0.21 -5.02 9.78 -38.81 -0.38 -5.40 16 17 C 0.10 2.61 5.57 -106.87 -0.60 2.02 16 18 C -0.46 -12.03 9.05 -37.73 -0.34 -12.37 16 19 H 0.08 2.00 7.91 -52.49 -0.41 1.58 16 20 C 0.07 1.85 5.14 -17.34 -0.09 1.76 16 21 N -0.78 -20.64 10.96 55.55 0.61 -20.03 16 22 Si 0.91 18.71 29.59 -169.99 -5.03 13.68 16 23 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 24 H -0.26 -5.36 7.11 56.52 0.40 -4.95 16 25 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 26 C -0.09 -2.44 8.24 -38.44 -0.32 -2.75 16 27 C -0.11 -1.13 4.89 -26.76 -0.13 -1.26 16 28 H 0.08 0.51 7.14 -51.92 -0.37 0.14 16 29 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.08 0.56 8.14 -51.92 -0.42 0.14 16 31 H 0.06 0.51 6.92 -51.93 -0.36 0.15 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.80 7.60 -51.93 -0.39 0.41 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.40 5.60 4.88 -40.82 -0.20 5.40 16 38 H 0.09 1.48 6.38 -52.49 -0.33 1.15 16 39 H 0.09 1.65 8.06 -52.49 -0.42 1.22 16 40 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 41 H 0.29 6.94 8.30 -40.82 -0.34 6.60 16 42 H 0.13 3.82 5.75 -52.49 -0.30 3.52 16 43 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 362.09 15.07 5.46 5.46 Total: -1.00 -28.92 362.09 -10.89 -39.81 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -6.47 Total: 10.96 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: -2.97 Total: -19.87 kcal Atomic # 7 Polarization: -32.20 SS G_CDS: 0.38 Total: -31.82 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.09 Total: -13.19 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.68 kcal Atomic # 16 Polarization: -2.68 SS G_CDS: -2.34 Total: -5.02 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -28.92 -10.89 -39.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172200852.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.374 kcal (2) G-P(sol) polarization free energy of solvation -28.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds