Wall clock time and date at job start Tue Mar 31 2020 12:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81401 * 103.00050 * 2 1 4 4 H 1.08996 * 109.47015 * 55.00093 * 3 2 1 5 5 C 1.53000 * 109.47222 * 295.00354 * 3 2 1 6 6 C 1.52998 * 109.47024 * 180.02562 * 5 3 2 7 7 C 1.52994 * 109.47625 * 59.99815 * 6 5 3 8 8 C 1.53000 * 109.47071 * 300.00157 * 7 6 5 9 9 H 1.08998 * 109.47268 * 179.97438 * 8 7 6 10 10 N 1.46498 * 109.46968 * 299.99607 * 8 7 6 11 11 C 1.34771 * 120.00205 * 275.00039 * 10 8 7 12 12 O 1.21550 * 120.00143 * 0.02562 * 11 10 8 13 13 C 1.47888 * 120.00028 * 180.02562 * 11 10 8 14 14 C 1.39923 * 120.02660 * 359.97438 * 13 11 10 15 15 C 1.38328 * 120.35741 * 180.02562 * 14 13 11 16 16 C 1.37750 * 120.41335 * 359.97438 * 15 14 13 17 17 C 1.40747 * 120.04155 * 0.02562 * 16 15 14 18 18 C 1.41437 * 120.17790 * 180.02562 * 17 16 15 19 19 H 1.07998 * 119.99790 * 335.64106 * 18 17 16 20 20 C 1.39943 * 119.99888 * 155.64682 * 18 17 16 21 21 N 1.30826 * 119.99736 * 342.27001 * 20 18 17 22 22 Si 1.86799 * 119.99857 * 162.26929 * 20 18 17 23 23 H 1.48496 * 109.46875 * 179.97438 * 22 20 18 24 24 H 1.48499 * 109.47108 * 299.99890 * 22 20 18 25 25 H 1.48506 * 109.46824 * 59.99929 * 22 20 18 26 26 C 1.38998 * 120.02300 * 180.29943 * 13 11 10 27 27 C 1.53000 * 109.47169 * 174.99974 * 3 2 1 28 28 H 1.09001 * 109.47014 * 59.99438 * 1 2 3 29 29 H 1.08994 * 109.47174 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46652 * 300.00072 * 1 2 3 31 31 H 1.08998 * 109.47268 * 59.99733 * 5 3 2 32 32 H 1.09006 * 109.46911 * 299.99807 * 5 3 2 33 33 H 1.09006 * 109.46969 * 299.99588 * 6 5 3 34 34 H 1.09007 * 109.47152 * 180.02562 * 6 5 3 35 35 H 1.08995 * 109.47832 * 179.97438 * 7 6 5 36 36 H 1.09006 * 109.47132 * 59.99873 * 7 6 5 37 37 H 0.97005 * 119.99615 * 94.99905 * 10 8 7 38 38 H 1.08001 * 119.81509 * 0.02562 * 14 13 11 39 39 H 1.08001 * 119.78918 * 180.02562 * 15 14 13 40 40 H 1.08001 * 119.97624 * 180.02562 * 16 15 14 41 41 H 0.97008 * 119.99470 * 180.02562 * 21 20 18 42 42 H 1.07998 * 120.20777 * 359.97438 * 26 13 11 43 43 H 1.09006 * 109.46712 * 60.00566 * 27 3 2 44 44 H 1.08998 * 109.47337 * 300.00433 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 0.8418 5 6 1.7427 2.4016 -1.3073 6 6 2.0875 3.8923 -1.3075 7 6 3.6024 4.0654 -1.1821 8 6 4.0818 3.4313 0.1252 9 1 5.1611 3.5543 0.2143 10 7 3.4202 4.0858 1.2566 11 6 3.9313 5.2218 1.7709 12 8 4.9409 5.7038 1.2957 13 6 3.2637 5.8821 2.9135 14 6 2.1012 5.3281 3.4607 15 6 1.4709 5.9403 4.5291 16 6 1.9802 7.1016 5.0670 17 6 3.1487 7.6736 4.5300 18 6 3.6745 8.8657 5.0804 19 1 3.0271 9.5452 5.6147 20 6 5.0337 9.1646 4.9326 21 7 5.8793 8.2209 4.6073 22 14 5.6403 10.9110 5.2000 23 1 7.1087 10.9632 4.9850 24 1 4.9662 11.8215 4.2399 25 1 5.3282 11.3363 6.5882 26 6 3.7869 7.0572 3.4403 27 6 3.7370 1.9412 0.1257 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.6635 2.2779 -1.3969 32 1 2.2354 1.9150 -2.1492 33 1 1.5952 4.3792 -0.4656 34 1 1.7456 4.3441 -2.2387 35 1 3.8481 5.1273 -1.1828 36 1 4.0947 3.5785 -2.0240 37 1 2.6143 3.7013 1.6356 38 1 1.6938 4.4176 3.0465 39 1 0.5743 5.5045 4.9445 40 1 1.4827 7.5734 5.9014 41 1 6.8215 8.4281 4.5052 42 1 4.6813 7.4910 3.0181 43 1 4.2295 1.4546 -0.7162 44 1 4.0785 1.4894 1.0570 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172200852.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:32 Heat of formation + Delta-G solvation = -55.769143 kcal Electronic energy + Delta-G solvation = -24481.165923 eV Core-core repulsion = 21101.436170 eV Total energy + Delta-G solvation = -3379.729754 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.34244 -39.52325 -38.48116 -35.64898 -34.73205 -32.29917 -31.91654 -31.30583 -30.62463 -29.47007 -27.20559 -24.78621 -23.75645 -23.39462 -22.77118 -21.50118 -20.19688 -19.59888 -18.08840 -17.51381 -16.97359 -16.76381 -16.44064 -16.37957 -15.97109 -15.58509 -15.17868 -15.04227 -14.87211 -14.47979 -14.31110 -14.27075 -14.19251 -13.88339 -13.48687 -13.26428 -13.20912 -12.94333 -12.84131 -12.80089 -12.58596 -12.50829 -12.21257 -11.90365 -11.80279 -11.55793 -11.52269 -11.22346 -11.07360 -10.76562 -10.70985 -10.07916 -9.47495 -9.39337 -8.67361 -8.65634 -6.39031 0.38368 0.73044 1.00615 1.35584 1.47192 1.50036 1.66080 2.11184 2.18783 2.25086 2.78448 3.56076 3.62246 3.69963 3.81225 4.04111 4.06719 4.11832 4.29346 4.36375 4.36750 4.39434 4.41013 4.56392 4.58287 4.60085 4.76438 4.88429 4.90938 4.97788 5.01360 5.06820 5.08469 5.18281 5.21034 5.25691 5.31089 5.35357 5.50784 5.58318 5.85678 5.91896 6.04582 6.28032 6.50328 6.68053 6.87078 6.94008 7.33033 8.29133 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.021952 B = 0.003046 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.219413 B = 9191.070653 C = 9885.684897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 S -0.297 6.297 3 C -0.045 4.045 4 H 0.084 0.916 5 C -0.103 4.103 6 C -0.111 4.111 7 C -0.128 4.128 8 C 0.150 3.850 9 H 0.070 0.930 10 N -0.706 5.706 11 C 0.562 3.438 12 O -0.587 6.587 13 C -0.138 4.138 14 C -0.199 4.199 15 C -0.095 4.095 16 C -0.218 4.218 17 C 0.068 3.932 18 C -0.498 4.498 19 H 0.084 0.916 20 C 0.030 3.970 21 N -0.824 5.824 22 Si 0.982 3.018 23 H -0.272 1.272 24 H -0.260 1.260 25 H -0.252 1.252 26 C -0.131 4.131 27 C -0.096 4.096 28 H 0.088 0.912 29 H 0.110 0.890 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.053 0.947 34 H 0.078 0.922 35 H 0.040 0.960 36 H 0.092 0.908 37 H 0.407 0.593 38 H 0.132 0.868 39 H 0.138 0.862 40 H 0.108 0.892 41 H 0.287 0.713 42 H 0.098 0.902 43 H 0.100 0.900 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.903 -13.940 -10.871 20.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 S -0.069 6.069 3 C -0.173 4.173 4 H 0.102 0.898 5 C -0.142 4.142 6 C -0.151 4.151 7 C -0.167 4.167 8 C 0.044 3.956 9 H 0.088 0.912 10 N -0.359 5.359 11 C 0.352 3.648 12 O -0.468 6.468 13 C -0.142 4.142 14 C -0.218 4.218 15 C -0.113 4.113 16 C -0.238 4.238 17 C 0.066 3.934 18 C -0.528 4.528 19 H 0.102 0.898 20 C -0.186 4.186 21 N -0.450 5.450 22 Si 0.803 3.197 23 H -0.197 1.197 24 H -0.185 1.185 25 H -0.176 1.176 26 C -0.151 4.151 27 C -0.135 4.135 28 H 0.107 0.893 29 H 0.128 0.872 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.071 0.929 34 H 0.096 0.904 35 H 0.059 0.941 36 H 0.110 0.890 37 H 0.245 0.755 38 H 0.149 0.851 39 H 0.155 0.845 40 H 0.126 0.874 41 H 0.097 0.903 42 H 0.116 0.884 43 H 0.119 0.881 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.287 -14.631 -11.234 20.222 hybrid contribution -0.372 1.809 0.572 1.934 sum -8.659 -12.822 -10.662 18.790 Atomic orbital electron populations 1.23463 0.91602 1.07339 1.05847 1.86984 1.10345 1.11527 1.98026 1.23122 0.99253 0.93110 1.01858 0.89782 1.21820 1.01752 0.94692 0.95913 1.21485 0.94824 0.96353 1.02424 1.21900 0.97472 1.00251 0.97038 1.20968 0.97208 0.91715 0.85716 0.91217 1.45877 1.30495 1.25123 1.34429 1.18693 0.83055 0.80646 0.82389 1.90669 1.27042 1.65884 1.63205 1.19809 0.98441 0.97886 0.98028 1.20787 0.97100 1.02412 1.01549 1.20904 0.99385 0.95036 0.95933 1.21396 1.00587 0.99004 1.02835 1.17942 0.92172 0.92957 0.90334 1.19852 0.94536 1.05514 1.32849 0.89781 1.26861 0.96723 1.02982 0.91986 1.69890 1.04724 1.35709 1.34649 0.85246 0.77442 0.76806 0.80232 1.19673 1.18475 1.17600 1.21444 1.00739 0.96216 0.96731 1.21551 0.93771 0.93656 1.04508 0.89285 0.87161 0.89956 0.90464 0.89809 0.92853 0.90367 0.94088 0.88954 0.75460 0.85078 0.84450 0.87396 0.90296 0.88354 0.88125 0.90751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 10.45 113.37 1.19 -0.09 16 2 S -0.30 -5.08 21.79 -56.49 -1.23 -6.31 16 3 C -0.04 -0.75 2.48 30.59 0.08 -0.67 16 4 H 0.08 1.45 6.51 -2.39 -0.02 1.44 16 5 C -0.10 -1.49 5.11 30.59 0.16 -1.33 16 6 C -0.11 -2.07 5.76 30.59 0.18 -1.90 16 7 C -0.13 -2.97 5.60 30.59 0.17 -2.80 16 8 C 0.15 3.88 2.78 44.98 0.13 4.00 16 9 H 0.07 2.16 7.58 -2.39 -0.02 2.14 16 10 N -0.71 -21.80 4.18 -445.45 -1.86 -23.66 16 11 C 0.56 24.47 7.74 86.80 0.67 25.14 16 12 O -0.59 -30.27 16.00 -3.87 -0.06 -30.33 16 13 C -0.14 -6.53 5.87 -20.13 -0.12 -6.65 16 14 C -0.20 -7.76 9.55 22.70 0.22 -7.55 16 15 C -0.09 -3.73 10.01 22.18 0.22 -3.51 16 16 C -0.22 -10.20 9.78 22.77 0.22 -9.98 16 17 C 0.07 3.72 5.57 -21.32 -0.12 3.60 16 18 C -0.50 -27.24 9.05 23.47 0.21 -27.03 16 19 H 0.08 4.32 7.91 -2.91 -0.02 4.30 16 20 C 0.03 1.55 5.14 85.26 0.44 1.99 16 21 N -0.82 -46.30 10.96 21.83 0.24 -46.06 16 22 Si 0.98 39.80 29.59 68.60 2.03 41.83 16 23 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 24 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 25 H -0.25 -9.59 7.11 99.48 0.71 -8.88 16 26 C -0.13 -7.28 8.24 23.01 0.19 -7.09 16 27 C -0.10 -1.86 4.89 30.58 0.15 -1.71 16 28 H 0.09 0.80 7.14 -2.39 -0.02 0.79 16 29 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.08 0.94 6.92 -2.39 -0.02 0.92 16 32 H 0.08 1.13 8.14 -2.38 -0.02 1.12 16 33 H 0.05 1.15 7.60 -2.38 -0.02 1.13 16 34 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 35 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 37 H 0.41 10.55 4.88 -92.70 -0.45 10.09 16 38 H 0.13 3.90 6.38 -2.91 -0.02 3.88 16 39 H 0.14 4.20 8.06 -2.91 -0.02 4.18 16 40 H 0.11 4.65 8.06 -2.91 -0.02 4.63 16 41 H 0.29 14.88 8.30 -92.70 -0.77 14.11 16 42 H 0.10 6.11 5.75 -2.91 -0.02 6.10 16 43 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 44 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -68.15 362.09 3.64 -64.51 By element: Atomic # 1 Polarization: 35.04 SS G_CDS: 0.55 Total: 35.59 kcal Atomic # 6 Polarization: -39.55 SS G_CDS: 3.98 Total: -35.57 kcal Atomic # 7 Polarization: -68.10 SS G_CDS: -1.62 Total: -69.72 kcal Atomic # 8 Polarization: -30.27 SS G_CDS: -0.06 Total: -30.33 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 2.03 Total: 41.83 kcal Atomic # 16 Polarization: -5.08 SS G_CDS: -1.23 Total: -6.31 kcal Total: -68.15 3.64 -64.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172200852.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.743 kcal (2) G-P(sol) polarization free energy of solvation -68.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds