Wall clock time and date at job start Tue Mar 31 2020 12:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.81399 * 103.00168 * 2 1 4 4 H 1.08995 * 109.33239 * 312.07336 * 3 2 1 5 5 C 1.47092 * 109.32650 * 192.41446 * 3 2 1 6 6 C 1.52574 * 114.32488 * 176.93464 * 5 3 2 7 7 C 1.50886 * 109.35367 * 85.02243 * 6 5 3 8 8 C 1.53946 * 110.09416 * 268.11298 * 7 6 5 9 9 N 1.47606 * 112.14330 * 40.56347 * 8 7 6 10 10 C 1.34771 * 118.64563 * 222.13117 * 9 8 7 11 11 O 1.21549 * 119.99700 * 12.05135 * 10 9 8 12 12 C 1.47887 * 120.00364 * 192.05658 * 10 9 8 13 13 C 1.39919 * 120.02172 * 331.90206 * 12 10 9 14 14 C 1.38330 * 120.35523 * 180.02562 * 13 12 10 15 15 C 1.37750 * 120.41156 * 359.69431 * 14 13 12 16 16 C 1.40746 * 120.03973 * 0.56410 * 15 14 13 17 17 C 1.41444 * 120.17788 * 179.74255 * 16 15 14 18 18 H 1.07997 * 119.99647 * 331.94011 * 17 16 15 19 19 C 1.39934 * 119.99953 * 151.66791 * 17 16 15 20 20 N 1.30826 * 120.00339 * 349.04498 * 19 17 16 21 21 Si 1.86802 * 119.99719 * 169.03868 * 19 17 16 22 22 H 1.48497 * 109.47076 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46863 * 120.00204 * 21 19 17 24 24 H 1.48501 * 109.47343 * 240.00204 * 21 19 17 25 25 C 1.38998 * 120.02591 * 151.88564 * 12 10 9 26 26 C 1.44585 * 122.71385 * 42.40774 * 9 8 7 27 27 H 1.09001 * 109.46827 * 283.66928 * 1 2 3 28 28 H 1.09001 * 109.46907 * 43.66712 * 1 2 3 29 29 H 1.09000 * 109.47257 * 163.66713 * 1 2 3 30 30 H 1.08998 * 108.50928 * 55.68843 * 5 3 2 31 31 H 1.08997 * 108.51552 * 298.18736 * 5 3 2 32 32 H 1.08998 * 109.49234 * 325.06284 * 6 5 3 33 33 H 1.09000 * 109.50915 * 205.00024 * 6 5 3 34 34 H 1.08991 * 109.36500 * 147.92136 * 7 6 5 35 35 H 1.08996 * 109.36104 * 28.30349 * 7 6 5 36 36 H 1.08995 * 108.94639 * 279.87840 * 8 7 6 37 37 H 1.09003 * 108.94662 * 161.24421 * 8 7 6 38 38 H 1.08000 * 119.82523 * 359.97438 * 13 12 10 39 39 H 1.08006 * 119.79153 * 179.97438 * 14 13 12 40 40 H 1.08004 * 119.97891 * 180.27701 * 15 14 13 41 41 H 0.96996 * 120.00314 * 180.02562 * 20 19 17 42 42 H 1.07997 * 120.19920 * 359.97438 * 25 12 10 43 43 H 1.09001 * 109.44453 * 29.04178 * 26 9 8 44 44 H 1.09002 * 109.44719 * 148.96043 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7675 0.0000 4 1 1.6318 2.2741 -0.7634 5 6 3.6525 1.9368 -0.2984 6 6 4.1056 3.3902 -0.3997 7 6 4.4277 3.9109 0.9793 8 6 3.1836 4.5731 1.5986 9 7 1.9500 3.8136 1.3154 10 6 0.8364 4.4930 0.9768 11 8 0.9066 5.6735 0.6958 12 6 -0.4710 3.8023 0.9470 13 6 -0.5317 2.4297 0.6828 14 6 -1.7509 1.7768 0.6528 15 6 -2.9184 2.4687 0.8888 16 6 -2.8775 3.8509 1.1509 17 6 -4.0750 4.5653 1.3883 18 1 -5.0021 4.2255 0.9510 19 6 -4.0593 5.7090 2.1943 20 7 -2.9957 5.9983 2.8990 21 14 -5.5572 6.8231 2.2640 22 1 -6.6205 6.2786 1.3820 23 1 -6.0592 6.8907 3.6600 24 1 -5.1828 8.1852 1.8061 25 6 -1.6403 4.5162 1.1819 26 6 1.8854 2.3712 1.3920 27 1 -0.3633 0.2429 0.9986 28 1 -0.3633 0.7434 -0.7096 29 1 -0.3634 -0.9862 -0.2890 30 1 3.8699 1.4399 -1.2438 31 1 4.2300 1.4482 0.4863 32 1 3.3079 3.9902 -0.8377 33 1 4.9939 3.4516 -1.0284 34 1 5.2309 4.6443 0.9102 35 1 4.7495 3.0836 1.6118 36 1 3.0801 5.5798 1.1940 37 1 3.3183 4.6393 2.6783 38 1 0.3781 1.8770 0.5004 39 1 -1.7872 0.7170 0.4475 40 1 -3.8661 1.9511 0.8681 41 1 -2.9850 6.7909 3.4580 42 1 -1.5980 5.5757 1.3870 43 1 2.6063 2.0143 2.1275 44 1 0.8820 2.0682 1.6911 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178882062.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:58 Heat of formation + Delta-G solvation = 44.391035 kcal Electronic energy + Delta-G solvation = -25817.487888 eV Core-core repulsion = 22442.101405 eV Total energy + Delta-G solvation = -3375.386482 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.46976 -37.66228 -37.14295 -34.48305 -33.50178 -32.85888 -30.98426 -29.98271 -28.00217 -26.85247 -25.74903 -24.88869 -22.97900 -21.40580 -20.84650 -20.31295 -18.81788 -17.70016 -16.65942 -16.51189 -15.81776 -15.46700 -15.23542 -14.84061 -14.66253 -14.36072 -13.93767 -13.55939 -13.36990 -13.31707 -13.07570 -12.90894 -12.45727 -12.34133 -12.22818 -12.04830 -11.64784 -11.50598 -11.27178 -11.15104 -11.01033 -10.83348 -10.76331 -10.59228 -10.44396 -10.28187 -10.09874 -9.71531 -9.53132 -9.31430 -8.98457 -8.38428 -7.70143 -7.63741 -7.46322 -6.82916 -4.50937 1.70582 2.15716 2.61249 2.70723 3.03877 3.05914 3.08929 3.44688 3.67602 3.87284 4.50974 4.57194 4.71960 4.86669 4.95571 5.10370 5.27443 5.32845 5.43482 5.44842 5.50842 5.53212 5.65441 5.68584 5.73989 5.90265 5.95545 5.99617 6.00485 6.09576 6.12883 6.16591 6.21173 6.31477 6.61561 6.89595 6.90982 6.97820 7.13624 7.28941 7.55373 7.65815 7.79658 7.93803 8.09441 8.43245 8.73467 8.74698 8.81188 10.10796 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.017075 B = 0.004529 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.470328 B = 6181.213931 C = 7558.087278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 S -0.278 6.278 3 C -0.068 4.068 4 H 0.095 0.905 5 C -0.100 4.100 6 C -0.109 4.109 7 C -0.130 4.130 8 C 0.109 3.891 9 N -0.607 5.607 10 C 0.563 3.437 11 O -0.545 6.545 12 C -0.125 4.125 13 C -0.270 4.270 14 C -0.115 4.115 15 C -0.207 4.207 16 C 0.100 3.900 17 C -0.458 4.458 18 H 0.081 0.919 19 C 0.071 3.929 20 N -0.794 5.794 21 Si 0.913 3.087 22 H -0.260 1.260 23 H -0.273 1.273 24 H -0.271 1.271 25 C -0.089 4.089 26 C 0.086 3.914 27 H 0.103 0.897 28 H 0.100 0.900 29 H 0.090 0.910 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.089 0.911 37 H 0.059 0.941 38 H 0.136 0.864 39 H 0.110 0.890 40 H 0.096 0.904 41 H 0.283 0.717 42 H 0.133 0.867 43 H 0.075 0.925 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.643 -7.091 -2.365 13.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 S -0.049 6.049 3 C -0.198 4.198 4 H 0.113 0.887 5 C -0.139 4.139 6 C -0.149 4.149 7 C -0.168 4.168 8 C -0.013 4.013 9 N -0.340 5.340 10 C 0.355 3.645 11 O -0.422 6.422 12 C -0.128 4.128 13 C -0.289 4.289 14 C -0.134 4.134 15 C -0.227 4.227 16 C 0.098 3.902 17 C -0.487 4.487 18 H 0.099 0.901 19 C -0.147 4.147 20 N -0.419 5.419 21 Si 0.738 3.262 22 H -0.184 1.184 23 H -0.199 1.199 24 H -0.196 1.196 25 C -0.109 4.109 26 C -0.039 4.039 27 H 0.122 0.878 28 H 0.119 0.881 29 H 0.109 0.891 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.108 0.892 37 H 0.077 0.923 38 H 0.153 0.847 39 H 0.127 0.873 40 H 0.114 0.886 41 H 0.094 0.906 42 H 0.151 0.849 43 H 0.093 0.907 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 11.454 -7.197 -2.330 13.727 hybrid contribution -1.442 1.427 0.185 2.037 sum 10.012 -5.771 -2.145 11.754 Atomic orbital electron populations 1.24871 0.92002 1.06219 1.07622 1.86580 1.09934 1.10480 1.97921 1.23095 1.00857 0.93653 1.02196 0.88723 1.20243 0.93544 0.97371 1.02708 1.21025 1.01380 0.95311 0.97146 1.21770 0.97308 1.00926 0.96782 1.21781 0.83354 0.96725 0.99436 1.47516 1.09980 1.06226 1.70283 1.19040 0.84362 0.86273 0.74831 1.90672 1.86583 1.16641 1.48347 1.19490 0.91880 0.94229 1.07185 1.22076 0.98170 0.94217 1.14434 1.21102 0.92877 0.98249 1.01150 1.21220 0.96490 0.94285 1.10672 1.17637 0.92963 0.90817 0.88799 1.19650 0.95260 1.07603 1.26181 0.90064 1.25950 0.97666 0.97431 0.93605 1.69751 1.28714 1.24077 1.19375 0.86170 0.81270 0.79900 0.78891 1.18366 1.19872 1.19597 1.21652 0.90049 1.00218 0.98995 1.23122 1.06429 0.80191 0.94200 0.87806 0.88092 0.89096 0.91448 0.91435 0.91187 0.91493 0.90799 0.91606 0.89227 0.92319 0.84688 0.87259 0.88563 0.90591 0.84922 0.90677 0.84880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 6.82 101.05 0.69 -1.11 16 2 S -0.28 -3.63 21.67 -107.50 -2.33 -5.96 16 3 C -0.07 -0.93 1.80 -28.28 -0.05 -0.98 16 4 H 0.09 1.48 7.44 -51.92 -0.39 1.10 16 5 C -0.10 -1.16 4.38 -29.79 -0.13 -1.29 16 6 C -0.11 -1.23 5.51 -28.01 -0.15 -1.39 16 7 C -0.13 -1.39 5.71 -27.30 -0.16 -1.55 16 8 C 0.11 1.55 6.16 -2.94 -0.02 1.53 16 9 N -0.61 -10.27 2.23 -173.28 -0.39 -10.66 16 10 C 0.56 12.19 7.40 -12.31 -0.09 12.10 16 11 O -0.54 -13.39 15.96 5.32 0.08 -13.30 16 12 C -0.12 -2.85 5.64 -105.04 -0.59 -3.44 16 13 C -0.27 -5.25 5.39 -38.92 -0.21 -5.46 16 14 C -0.12 -2.23 7.97 -39.73 -0.32 -2.55 16 15 C -0.21 -4.64 9.78 -38.81 -0.38 -5.02 16 16 C 0.10 2.57 5.56 -106.87 -0.59 1.97 16 17 C -0.46 -11.75 9.06 -37.73 -0.34 -12.09 16 18 H 0.08 1.99 7.87 -52.49 -0.41 1.57 16 19 C 0.07 1.77 5.25 -17.35 -0.09 1.68 16 20 N -0.79 -20.58 10.80 55.55 0.60 -19.98 16 21 Si 0.91 18.54 29.57 -169.99 -5.03 13.51 16 22 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 23 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 24 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 25 C -0.09 -2.31 8.20 -38.44 -0.32 -2.62 16 26 C 0.09 1.28 4.29 -3.78 -0.02 1.27 16 27 H 0.10 1.42 5.16 -51.92 -0.27 1.15 16 28 H 0.10 1.42 5.69 -51.92 -0.30 1.13 16 29 H 0.09 0.99 8.14 -51.92 -0.42 0.57 16 30 H 0.07 0.75 8.12 -51.93 -0.42 0.33 16 31 H 0.07 0.74 7.37 -51.93 -0.38 0.35 16 32 H 0.07 0.97 7.48 -51.93 -0.39 0.59 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.65 7.32 -51.93 -0.38 0.27 16 36 H 0.09 1.42 6.89 -51.93 -0.36 1.06 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.14 2.21 0.11 -52.49 -0.01 2.21 16 39 H 0.11 1.73 4.96 -52.48 -0.26 1.47 16 40 H 0.10 2.02 8.06 -52.48 -0.42 1.59 16 41 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 42 H 0.13 3.77 5.99 -52.49 -0.31 3.46 16 43 H 0.07 1.00 8.07 -51.93 -0.42 0.58 16 44 H 0.13 2.23 3.94 -55.10 -0.22 2.02 16 LS Contribution 335.80 15.07 5.06 5.06 Total: -1.00 -28.02 335.80 -10.52 -38.54 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -5.76 Total: 11.74 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: -2.77 Total: -18.95 kcal Atomic # 7 Polarization: -30.85 SS G_CDS: 0.21 Total: -30.64 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: 0.08 Total: -13.30 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.51 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -2.33 Total: -5.96 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.02 -10.52 -38.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178882062.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.934 kcal (2) G-P(sol) polarization free energy of solvation -28.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds