Wall clock time and date at job start Tue Mar 31 2020 12:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.81399 * 103.00168 * 2 1 4 4 H 1.08995 * 109.33239 * 312.07336 * 3 2 1 5 5 C 1.47092 * 109.32650 * 192.41446 * 3 2 1 6 6 C 1.52574 * 114.32488 * 176.93464 * 5 3 2 7 7 C 1.50886 * 109.35367 * 85.02243 * 6 5 3 8 8 C 1.53946 * 110.09416 * 268.11298 * 7 6 5 9 9 N 1.47606 * 112.14330 * 40.56347 * 8 7 6 10 10 C 1.34771 * 118.64563 * 222.13117 * 9 8 7 11 11 O 1.21549 * 119.99700 * 12.05135 * 10 9 8 12 12 C 1.47887 * 120.00364 * 192.05658 * 10 9 8 13 13 C 1.39919 * 120.02172 * 331.90206 * 12 10 9 14 14 C 1.38330 * 120.35523 * 180.02562 * 13 12 10 15 15 C 1.37750 * 120.41156 * 359.69431 * 14 13 12 16 16 C 1.40746 * 120.03973 * 0.56410 * 15 14 13 17 17 C 1.41444 * 120.17788 * 179.74255 * 16 15 14 18 18 H 1.07997 * 119.99647 * 331.94011 * 17 16 15 19 19 C 1.39934 * 119.99953 * 151.66791 * 17 16 15 20 20 N 1.30826 * 120.00339 * 349.04498 * 19 17 16 21 21 Si 1.86802 * 119.99719 * 169.03868 * 19 17 16 22 22 H 1.48497 * 109.47076 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46863 * 120.00204 * 21 19 17 24 24 H 1.48501 * 109.47343 * 240.00204 * 21 19 17 25 25 C 1.38998 * 120.02591 * 151.88564 * 12 10 9 26 26 C 1.44585 * 122.71385 * 42.40774 * 9 8 7 27 27 H 1.09001 * 109.46827 * 283.66928 * 1 2 3 28 28 H 1.09001 * 109.46907 * 43.66712 * 1 2 3 29 29 H 1.09000 * 109.47257 * 163.66713 * 1 2 3 30 30 H 1.08998 * 108.50928 * 55.68843 * 5 3 2 31 31 H 1.08997 * 108.51552 * 298.18736 * 5 3 2 32 32 H 1.08998 * 109.49234 * 325.06284 * 6 5 3 33 33 H 1.09000 * 109.50915 * 205.00024 * 6 5 3 34 34 H 1.08991 * 109.36500 * 147.92136 * 7 6 5 35 35 H 1.08996 * 109.36104 * 28.30349 * 7 6 5 36 36 H 1.08995 * 108.94639 * 279.87840 * 8 7 6 37 37 H 1.09003 * 108.94662 * 161.24421 * 8 7 6 38 38 H 1.08000 * 119.82523 * 359.97438 * 13 12 10 39 39 H 1.08006 * 119.79153 * 179.97438 * 14 13 12 40 40 H 1.08004 * 119.97891 * 180.27701 * 15 14 13 41 41 H 0.96996 * 120.00314 * 180.02562 * 20 19 17 42 42 H 1.07997 * 120.19920 * 359.97438 * 25 12 10 43 43 H 1.09001 * 109.44453 * 29.04178 * 26 9 8 44 44 H 1.09002 * 109.44719 * 148.96043 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7675 0.0000 4 1 1.6318 2.2741 -0.7634 5 6 3.6525 1.9368 -0.2984 6 6 4.1056 3.3902 -0.3997 7 6 4.4277 3.9109 0.9793 8 6 3.1836 4.5731 1.5986 9 7 1.9500 3.8136 1.3154 10 6 0.8364 4.4930 0.9768 11 8 0.9066 5.6735 0.6958 12 6 -0.4710 3.8023 0.9470 13 6 -0.5317 2.4297 0.6828 14 6 -1.7509 1.7768 0.6528 15 6 -2.9184 2.4687 0.8888 16 6 -2.8775 3.8509 1.1509 17 6 -4.0750 4.5653 1.3883 18 1 -5.0021 4.2255 0.9510 19 6 -4.0593 5.7090 2.1943 20 7 -2.9957 5.9983 2.8990 21 14 -5.5572 6.8231 2.2640 22 1 -6.6205 6.2786 1.3820 23 1 -6.0592 6.8907 3.6600 24 1 -5.1828 8.1852 1.8061 25 6 -1.6403 4.5162 1.1819 26 6 1.8854 2.3712 1.3920 27 1 -0.3633 0.2429 0.9986 28 1 -0.3633 0.7434 -0.7096 29 1 -0.3634 -0.9862 -0.2890 30 1 3.8699 1.4399 -1.2438 31 1 4.2300 1.4482 0.4863 32 1 3.3079 3.9902 -0.8377 33 1 4.9939 3.4516 -1.0284 34 1 5.2309 4.6443 0.9102 35 1 4.7495 3.0836 1.6118 36 1 3.0801 5.5798 1.1940 37 1 3.3183 4.6393 2.6783 38 1 0.3781 1.8770 0.5004 39 1 -1.7872 0.7170 0.4475 40 1 -3.8661 1.9511 0.8681 41 1 -2.9850 6.7909 3.4580 42 1 -1.5980 5.5757 1.3870 43 1 2.6063 2.0143 2.1275 44 1 0.8820 2.0682 1.6911 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178882062.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:58 Heat of formation + Delta-G solvation = 30.480542 kcal Electronic energy + Delta-G solvation = -25818.091092 eV Core-core repulsion = 22442.101405 eV Total energy + Delta-G solvation = -3375.989687 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.95476 -39.23149 -38.69948 -36.08731 -34.91106 -34.15539 -32.49608 -31.68345 -29.46332 -28.07992 -27.24986 -26.31788 -24.49303 -23.02837 -22.28990 -21.42714 -20.33640 -19.34738 -18.00925 -17.94633 -17.36216 -16.95363 -16.82890 -16.20818 -16.02473 -15.58548 -15.22669 -15.12658 -14.78996 -14.56653 -14.45187 -14.31308 -14.01886 -13.73393 -13.41142 -13.31931 -13.24625 -12.96117 -12.76524 -12.68241 -12.37624 -12.22783 -11.97405 -11.89844 -11.79294 -11.65530 -11.45312 -11.25013 -11.09684 -10.82539 -10.64622 -9.82195 -9.47890 -9.30678 -8.66735 -8.63853 -6.43689 0.36151 0.62422 0.94024 1.34627 1.42315 1.50216 1.51732 1.89081 2.11526 2.17436 2.71746 3.45656 3.55466 3.64646 3.72377 3.94638 3.96304 4.14151 4.24636 4.30833 4.32167 4.40764 4.41864 4.52178 4.59260 4.69283 4.71074 4.86247 4.87994 5.00234 5.01615 5.04908 5.09572 5.16339 5.17739 5.21162 5.27960 5.38444 5.46956 5.60875 5.77681 5.86738 6.01663 6.22132 6.31513 6.57823 6.85398 6.90571 7.14838 8.30247 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.017075 B = 0.004529 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.470328 B = 6181.213931 C = 7558.087278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 S -0.255 6.255 3 C -0.067 4.067 4 H 0.070 0.930 5 C -0.099 4.099 6 C -0.108 4.108 7 C -0.119 4.119 8 C 0.101 3.899 9 N -0.592 5.592 10 C 0.554 3.446 11 O -0.588 6.588 12 C -0.140 4.140 13 C -0.244 4.244 14 C -0.109 4.109 15 C -0.210 4.210 16 C 0.069 3.931 17 C -0.495 4.495 18 H 0.084 0.916 19 C 0.027 3.973 20 N -0.835 5.835 21 Si 0.985 3.015 22 H -0.252 1.252 23 H -0.264 1.264 24 H -0.272 1.272 25 C -0.127 4.127 26 C 0.081 3.919 27 H 0.097 0.903 28 H 0.088 0.912 29 H 0.119 0.881 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.036 0.964 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.173 0.827 39 H 0.157 0.843 40 H 0.111 0.889 41 H 0.285 0.715 42 H 0.095 0.905 43 H 0.105 0.895 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.581 -10.078 -2.628 16.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.318 4.318 2 S -0.027 6.027 3 C -0.197 4.197 4 H 0.089 0.911 5 C -0.137 4.137 6 C -0.148 4.148 7 C -0.157 4.157 8 C -0.020 4.020 9 N -0.324 5.324 10 C 0.345 3.655 11 O -0.470 6.470 12 C -0.143 4.143 13 C -0.263 4.263 14 C -0.126 4.126 15 C -0.230 4.230 16 C 0.066 3.934 17 C -0.525 4.525 18 H 0.102 0.898 19 C -0.186 4.186 20 N -0.462 5.462 21 Si 0.805 3.195 22 H -0.175 1.175 23 H -0.188 1.188 24 H -0.197 1.197 25 C -0.147 4.147 26 C -0.044 4.044 27 H 0.116 0.884 28 H 0.107 0.893 29 H 0.137 0.863 30 H 0.095 0.905 31 H 0.104 0.896 32 H 0.055 0.945 33 H 0.110 0.890 34 H 0.115 0.885 35 H 0.106 0.894 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.189 0.811 39 H 0.174 0.826 40 H 0.129 0.871 41 H 0.095 0.905 42 H 0.113 0.887 43 H 0.123 0.877 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 13.427 -10.240 -2.591 17.084 hybrid contribution -1.855 2.147 0.221 2.846 sum 11.572 -8.093 -2.370 14.318 Atomic orbital electron populations 1.24857 0.92457 1.07651 1.06790 1.86584 1.09483 1.08827 1.97781 1.23042 1.02302 0.94268 1.00096 0.91131 1.20260 0.91944 0.97659 1.03847 1.21041 1.01329 0.94664 0.97737 1.21764 0.95593 1.01977 0.96356 1.22062 0.83579 0.95827 1.00534 1.47530 1.09552 1.07142 1.68146 1.19026 0.85364 0.85890 0.75177 1.90636 1.87271 1.18385 1.50666 1.19811 0.91868 0.95747 1.06846 1.22636 1.00004 0.92807 1.10825 1.21631 0.91521 1.00390 0.99109 1.21547 0.98444 0.93319 1.09701 1.17967 0.92941 0.92483 0.89972 1.19914 0.95546 1.09316 1.27741 0.89824 1.26829 1.00539 0.98501 0.92767 1.69865 1.30889 1.24831 1.20627 0.85113 0.77619 0.77442 0.79291 1.17469 1.18832 1.19698 1.21418 0.91811 0.98981 1.02521 1.23225 1.06201 0.78824 0.96131 0.88423 0.89299 0.86279 0.90536 0.89570 0.94482 0.88961 0.88487 0.89374 0.91631 0.90979 0.81104 0.82581 0.87062 0.90479 0.88653 0.87672 0.86871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.31 6.82 113.37 0.77 -2.54 16 2 S -0.26 -5.70 21.67 -56.49 -1.22 -6.93 16 3 C -0.07 -1.65 1.80 29.59 0.05 -1.60 16 4 H 0.07 2.11 7.44 -2.39 -0.02 2.09 16 5 C -0.10 -1.92 4.38 28.62 0.13 -1.79 16 6 C -0.11 -2.14 5.51 29.77 0.16 -1.98 16 7 C -0.12 -2.16 5.71 30.23 0.17 -1.99 16 8 C 0.10 2.78 6.16 86.49 0.53 3.31 16 9 N -0.59 -19.91 2.23 -820.40 -1.83 -21.74 16 10 C 0.55 25.13 7.40 86.80 0.64 25.77 16 11 O -0.59 -31.02 15.96 -3.87 -0.06 -31.08 16 12 C -0.14 -6.66 5.64 -20.13 -0.11 -6.78 16 13 C -0.24 -9.40 5.39 22.70 0.12 -9.28 16 14 C -0.11 -4.06 7.97 22.18 0.18 -3.88 16 15 C -0.21 -9.51 9.78 22.77 0.22 -9.29 16 16 C 0.07 3.69 5.56 -21.32 -0.12 3.57 16 17 C -0.50 -26.86 9.06 23.47 0.21 -26.64 16 18 H 0.08 4.28 7.87 -2.91 -0.02 4.26 16 19 C 0.03 1.41 5.25 85.25 0.45 1.86 16 20 N -0.84 -46.47 10.80 21.82 0.24 -46.23 16 21 Si 0.98 39.74 29.57 68.60 2.03 41.77 16 22 H -0.25 -9.65 7.11 99.48 0.71 -8.95 16 23 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 24 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 25 C -0.13 -7.06 8.20 23.01 0.19 -6.87 16 26 C 0.08 2.24 4.29 87.57 0.38 2.61 16 27 H 0.10 2.30 5.16 -2.39 -0.01 2.29 16 28 H 0.09 2.22 5.69 -2.39 -0.01 2.21 16 29 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.08 1.40 8.12 -2.39 -0.02 1.38 16 31 H 0.09 1.42 7.37 -2.39 -0.02 1.40 16 32 H 0.04 1.00 7.48 -2.39 -0.02 0.98 16 33 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.09 1.27 7.32 -2.39 -0.02 1.26 16 36 H 0.07 2.14 6.89 -2.39 -0.02 2.12 16 37 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.17 5.33 0.11 -2.92 0.00 5.33 16 39 H 0.16 4.38 4.96 -2.91 -0.01 4.36 16 40 H 0.11 4.60 8.06 -2.91 -0.02 4.58 16 41 H 0.28 14.56 8.30 -92.71 -0.77 13.79 16 42 H 0.10 5.97 5.99 -2.91 -0.02 5.95 16 43 H 0.11 2.36 8.07 -2.39 -0.02 2.35 16 44 H 0.11 3.59 3.94 -5.36 -0.02 3.57 16 Total: -1.00 -67.91 335.80 4.15 -63.76 By element: Atomic # 1 Polarization: 34.93 SS G_CDS: 1.02 Total: 35.95 kcal Atomic # 6 Polarization: -39.47 SS G_CDS: 3.98 Total: -35.49 kcal Atomic # 7 Polarization: -66.38 SS G_CDS: -1.59 Total: -67.97 kcal Atomic # 8 Polarization: -31.02 SS G_CDS: -0.06 Total: -31.08 kcal Atomic # 14 Polarization: 39.74 SS G_CDS: 2.03 Total: 41.77 kcal Atomic # 16 Polarization: -5.70 SS G_CDS: -1.22 Total: -6.93 kcal Total: -67.91 4.15 -63.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178882062.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.237 kcal (2) G-P(sol) polarization free energy of solvation -67.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds