Wall clock time and date at job start Tue Mar 31 2020 12:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81397 * 102.99916 * 2 1 4 4 H 1.09002 * 109.18467 * 55.43257 * 3 2 1 5 5 C 1.47089 * 109.32841 * 174.99838 * 3 2 1 6 6 C 1.52568 * 114.20936 * 183.13827 * 5 3 2 7 7 C 1.51032 * 109.28001 * 274.78368 * 6 5 3 8 8 C 1.53946 * 109.97005 * 92.06363 * 7 6 5 9 9 N 1.47603 * 112.14385 * 319.42255 * 8 7 6 10 10 C 1.34770 * 118.64655 * 137.84901 * 9 8 7 11 11 O 1.21550 * 120.00217 * 175.72183 * 10 9 8 12 12 C 1.47885 * 119.99909 * 355.71199 * 10 9 8 13 13 C 1.39917 * 120.02222 * 45.64524 * 12 10 9 14 14 C 1.38334 * 120.35480 * 179.78160 * 13 12 10 15 15 C 1.37747 * 120.41389 * 0.47062 * 14 13 12 16 16 C 1.40746 * 120.03933 * 359.78487 * 15 14 13 17 17 C 1.41443 * 120.17701 * 180.02562 * 16 15 14 18 18 H 1.07997 * 119.99712 * 25.01512 * 17 16 15 19 19 C 1.39934 * 119.99685 * 205.01772 * 17 16 15 20 20 N 1.30825 * 120.00277 * 17.04604 * 19 17 16 21 21 Si 1.86805 * 119.99649 * 197.05045 * 19 17 16 22 22 H 1.48495 * 109.47120 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.46962 * 120.00158 * 21 19 17 24 24 H 1.48500 * 109.46757 * 239.99828 * 21 19 17 25 25 C 1.38994 * 120.02777 * 225.91272 * 12 10 9 26 26 C 1.44584 * 122.70830 * 317.85945 * 9 8 7 27 27 H 1.08997 * 109.47138 * 60.00344 * 1 2 3 28 28 H 1.09001 * 109.46790 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47501 * 300.00019 * 1 2 3 30 30 H 1.08999 * 108.51477 * 304.31879 * 5 3 2 31 31 H 1.09003 * 108.51540 * 61.96655 * 5 3 2 32 32 H 1.09005 * 109.48660 * 34.88090 * 6 5 3 33 33 H 1.09003 * 109.49173 * 154.93972 * 6 5 3 34 34 H 1.08998 * 109.44330 * 331.90212 * 7 6 5 35 35 H 1.09004 * 109.31441 * 212.14359 * 7 6 5 36 36 H 1.08997 * 108.95044 * 198.73175 * 8 7 6 37 37 H 1.09004 * 108.94797 * 80.10292 * 8 7 6 38 38 H 1.07999 * 119.82230 * 359.97438 * 13 12 10 39 39 H 1.08004 * 119.79392 * 180.22962 * 14 13 12 40 40 H 1.08004 * 119.97907 * 179.76106 * 15 14 13 41 41 H 0.97007 * 120.00292 * 180.02562 * 20 19 17 42 42 H 1.08000 * 120.20086 * 0.02562 * 25 12 10 43 43 H 1.09000 * 109.45177 * 330.69619 * 26 9 8 44 44 H 1.08991 * 109.42899 * 210.75359 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7335 2.2479 0.8477 5 6 3.6788 1.9308 0.1210 6 6 4.1405 3.3824 0.2083 7 6 4.2905 3.9426 -1.1862 8 6 2.9795 4.6202 -1.6245 9 7 1.7900 3.8505 -1.2105 10 6 0.7293 4.5175 -0.7144 11 8 -0.2913 3.9176 -0.4386 12 6 0.8070 5.9795 -0.5052 13 6 1.3453 6.8015 -1.5013 14 6 1.4172 8.1703 -1.3148 15 6 0.9689 8.7389 -0.1430 16 6 0.4292 7.9275 0.8725 17 6 -0.0324 8.5083 2.0767 18 1 -0.3537 9.5393 2.0904 19 6 -0.0728 7.7471 3.2502 20 7 0.6082 6.6330 3.3309 21 14 -1.0993 8.3217 4.7013 22 1 -1.7682 9.6023 4.3583 23 1 -2.1253 7.2962 5.0188 24 1 -0.2197 8.5236 5.8806 25 6 0.3506 6.5373 0.6832 26 6 1.7161 2.4103 -1.3150 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 4.0126 1.4070 1.0167 31 1 4.1521 1.4687 -0.7454 32 1 3.4035 3.9658 0.7602 33 1 5.1004 3.4284 0.7227 34 1 4.5288 3.1348 -1.8781 35 1 5.0970 4.6760 -1.1953 36 1 2.9774 4.7182 -2.7100 37 1 2.9295 5.6146 -1.1809 38 1 1.7037 6.3653 -2.4220 39 1 1.8310 8.7967 -2.0913 40 1 1.0320 9.8080 -0.0033 41 1 0.5799 6.1050 4.1443 42 1 -0.0613 5.9061 1.4567 43 1 2.3368 2.0743 -2.1456 44 1 0.6825 2.1121 -1.4905 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178882070.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:00 Heat of formation + Delta-G solvation = -34.041980 kcal Electronic energy + Delta-G solvation = -25396.909854 eV Core-core repulsion = 22018.122260 eV Total energy + Delta-G solvation = -3378.787593 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.61437 -39.22266 -38.40449 -35.76739 -34.93793 -33.75661 -31.93364 -31.32804 -29.95607 -27.99717 -27.46069 -26.33754 -24.38570 -22.89066 -22.38467 -21.50152 -20.21592 -19.27119 -17.97376 -17.81482 -17.27803 -17.03335 -16.55274 -16.28423 -15.81877 -15.55431 -15.44915 -14.87906 -14.78377 -14.63958 -14.49369 -14.41070 -14.13375 -13.98648 -13.66476 -13.41264 -13.26692 -12.99993 -12.84072 -12.64500 -12.41677 -12.28612 -12.19037 -12.00996 -11.78644 -11.58070 -11.54905 -11.37543 -11.20088 -11.07463 -10.68533 -9.78180 -9.42821 -9.35529 -8.78026 -8.69523 -6.39919 0.51465 0.58163 0.98385 1.34159 1.40212 1.44160 1.49397 1.83153 2.15189 2.18020 2.70237 3.44822 3.60628 3.64456 3.74119 3.97180 4.00912 4.14576 4.18490 4.26159 4.30211 4.38454 4.46442 4.53907 4.60243 4.64985 4.73428 4.80552 4.86869 4.93117 5.06115 5.06780 5.10040 5.13762 5.19162 5.25638 5.30406 5.37900 5.49811 5.66526 5.83374 5.95381 6.02078 6.23432 6.31302 6.58802 6.86874 6.92563 7.15394 8.26994 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.012992 B = 0.004492 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.723903 B = 6231.523299 C = 7245.097226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 S -0.255 6.255 3 C -0.058 4.058 4 H 0.047 0.953 5 C -0.097 4.097 6 C -0.110 4.110 7 C -0.123 4.123 8 C 0.086 3.914 9 N -0.590 5.590 10 C 0.559 3.441 11 O -0.590 6.590 12 C -0.127 4.127 13 C -0.199 4.199 14 C -0.092 4.092 15 C -0.219 4.219 16 C 0.073 3.927 17 C -0.497 4.497 18 H 0.082 0.918 19 C 0.033 3.967 20 N -0.826 5.826 21 Si 0.978 3.022 22 H -0.252 1.252 23 H -0.273 1.273 24 H -0.262 1.262 25 C -0.137 4.137 26 C 0.128 3.872 27 H 0.076 0.924 28 H 0.123 0.877 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.092 0.908 32 H 0.030 0.970 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.135 0.865 39 H 0.139 0.861 40 H 0.107 0.893 41 H 0.285 0.715 42 H 0.089 0.911 43 H 0.116 0.884 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.298 -8.572 -8.492 14.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 S -0.027 6.027 3 C -0.188 4.188 4 H 0.066 0.934 5 C -0.135 4.135 6 C -0.149 4.149 7 C -0.161 4.161 8 C -0.035 4.035 9 N -0.321 5.321 10 C 0.350 3.650 11 O -0.472 6.472 12 C -0.130 4.130 13 C -0.218 4.218 14 C -0.109 4.109 15 C -0.238 4.238 16 C 0.071 3.929 17 C -0.526 4.526 18 H 0.100 0.900 19 C -0.182 4.182 20 N -0.452 5.452 21 Si 0.799 3.201 22 H -0.175 1.175 23 H -0.198 1.198 24 H -0.187 1.187 25 C -0.158 4.158 26 C 0.003 3.997 27 H 0.095 0.905 28 H 0.141 0.859 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.110 0.890 32 H 0.049 0.951 33 H 0.103 0.897 34 H 0.109 0.891 35 H 0.115 0.885 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.153 0.847 39 H 0.157 0.843 40 H 0.125 0.875 41 H 0.095 0.905 42 H 0.107 0.893 43 H 0.134 0.866 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.537 -10.016 -8.209 15.511 hybrid contribution -1.740 1.195 1.340 2.500 sum 6.796 -8.821 -6.869 13.084 Atomic orbital electron populations 1.23422 0.93137 1.07177 1.04823 1.86418 1.08679 1.09733 1.97837 1.22783 1.01545 0.93676 1.00791 0.93429 1.20249 0.91466 0.97799 1.03987 1.21053 1.01197 0.94431 0.98254 1.21832 0.96229 1.01860 0.96146 1.22749 0.83629 0.96281 1.00798 1.47654 1.15436 1.06567 1.62470 1.19029 0.82885 0.88051 0.75021 1.90639 1.32507 1.70815 1.53201 1.19654 1.04569 0.91658 0.97092 1.20879 1.08326 0.93522 0.99098 1.20905 0.98849 0.94517 0.96678 1.21384 1.06899 0.98938 0.96618 1.17881 0.89881 0.91611 0.93531 1.19883 1.39884 0.99356 0.93500 0.89978 1.26762 0.94314 0.94090 1.03014 1.69874 1.32318 1.13799 1.29221 0.85213 0.78492 0.79561 0.76850 1.17547 1.19767 1.18708 1.21212 1.02955 0.95838 0.95747 1.21785 1.02241 0.79206 0.96460 0.90464 0.85877 0.91941 0.91685 0.88992 0.95119 0.89734 0.89123 0.88503 0.89102 0.89220 0.84723 0.84322 0.87451 0.90499 0.89279 0.86596 0.91613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.88 10.43 113.37 1.18 -1.69 16 2 S -0.25 -6.52 21.74 -56.49 -1.23 -7.75 16 3 C -0.06 -1.66 2.53 29.40 0.07 -1.58 16 4 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 5 C -0.10 -2.26 4.38 28.61 0.13 -2.14 16 6 C -0.11 -2.67 5.51 29.81 0.16 -2.50 16 7 C -0.12 -2.37 5.72 30.27 0.17 -2.20 16 8 C 0.09 2.18 4.64 86.49 0.40 2.58 16 9 N -0.59 -19.19 2.23 -821.53 -1.83 -21.02 16 10 C 0.56 24.50 7.22 86.80 0.63 25.12 16 11 O -0.59 -29.92 16.40 -3.87 -0.06 -29.99 16 12 C -0.13 -5.90 5.02 -20.13 -0.10 -6.00 16 13 C -0.20 -7.68 7.31 22.70 0.17 -7.51 16 14 C -0.09 -3.53 10.01 22.18 0.22 -3.30 16 15 C -0.22 -10.02 9.78 22.77 0.22 -9.80 16 16 C 0.07 3.92 5.57 -21.32 -0.12 3.80 16 17 C -0.50 -26.86 9.05 23.47 0.21 -26.65 16 18 H 0.08 4.22 7.90 -2.91 -0.02 4.20 16 19 C 0.03 1.69 5.15 85.25 0.44 2.13 16 20 N -0.83 -44.96 10.94 21.82 0.24 -44.72 16 21 Si 0.98 39.49 29.59 68.60 2.03 41.52 16 22 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16 23 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 24 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 25 C -0.14 -7.49 8.33 23.01 0.19 -7.30 16 26 C 0.13 3.62 4.71 87.38 0.41 4.03 16 27 H 0.08 1.95 6.85 -2.39 -0.02 1.94 16 28 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.06 1.54 8.12 -2.39 -0.02 1.52 16 31 H 0.09 1.73 7.35 -2.39 -0.02 1.71 16 32 H 0.03 1.03 7.48 -2.38 -0.02 1.01 16 33 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.09 1.32 7.31 -2.39 -0.02 1.30 16 35 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 36 H 0.09 1.78 7.81 -2.39 -0.02 1.76 16 37 H 0.09 2.74 4.62 -2.38 -0.01 2.73 16 38 H 0.14 4.16 6.33 -2.91 -0.02 4.14 16 39 H 0.14 4.13 8.06 -2.91 -0.02 4.10 16 40 H 0.11 4.56 8.06 -2.91 -0.02 4.53 16 41 H 0.28 14.25 8.30 -92.70 -0.77 13.48 16 42 H 0.09 5.45 6.17 -2.91 -0.02 5.44 16 43 H 0.12 2.48 8.06 -2.39 -0.02 2.46 16 44 H 0.07 2.11 5.59 -2.39 -0.01 2.10 16 Total: -1.00 -66.60 356.31 4.53 -62.07 By element: Atomic # 1 Polarization: 31.89 SS G_CDS: 1.00 Total: 32.89 kcal Atomic # 6 Polarization: -37.40 SS G_CDS: 4.39 Total: -33.00 kcal Atomic # 7 Polarization: -64.14 SS G_CDS: -1.60 Total: -65.74 kcal Atomic # 8 Polarization: -29.92 SS G_CDS: -0.06 Total: -29.99 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 2.03 Total: 41.52 kcal Atomic # 16 Polarization: -6.52 SS G_CDS: -1.23 Total: -7.75 kcal Total: -66.60 4.53 -62.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178882070.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.028 kcal (2) G-P(sol) polarization free energy of solvation -66.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds