Wall clock time and date at job start Tue Mar 31 2020 12:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35957 * 117.00141 * 2 1 4 4 C 1.38656 * 120.06287 * 359.97438 * 3 2 1 5 5 C 1.38183 * 119.97130 * 179.97438 * 4 3 2 6 6 C 1.38262 * 120.09349 * 0.02562 * 5 4 3 7 7 C 1.38248 * 120.12616 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.98622 * 179.97438 * 7 6 5 9 9 N 1.46903 * 109.47205 * 260.00373 * 8 7 6 10 10 C 1.46900 * 110.99982 * 66.04776 * 9 8 7 11 11 C 1.50693 * 109.47231 * 64.00211 * 10 9 8 12 12 H 1.07998 * 120.00601 * 4.43897 * 11 10 9 13 13 C 1.37881 * 119.99841 * 184.43505 * 11 10 9 14 14 N 1.31519 * 120.00067 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00086 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47052 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.47180 * 120.00057 * 15 13 11 18 18 H 1.48502 * 109.47145 * 240.00021 * 15 13 11 19 19 C 1.46910 * 110.99920 * 189.99780 * 9 8 7 20 20 C 1.50699 * 109.47124 * 163.70059 * 19 9 8 21 21 C 1.34505 * 125.78708 * 93.54679 * 20 19 9 22 22 C 1.41389 * 106.83947 * 179.88957 * 21 20 19 23 23 C 1.34517 * 106.84009 * 0.37501 * 22 21 20 24 24 O 1.34301 * 125.78742 * 273.85814 * 20 19 9 25 25 C 1.38339 * 120.03173 * 0.02562 * 7 6 5 26 26 F 1.35099 * 120.04801 * 179.97438 * 25 7 6 27 27 H 1.09004 * 109.46797 * 59.99533 * 1 2 3 28 28 H 1.08997 * 109.47052 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47298 * 300.00253 * 1 2 3 30 30 H 1.08005 * 120.01654 * 359.97438 * 4 3 2 31 31 H 1.08004 * 119.95260 * 179.97438 * 5 4 3 32 32 H 1.08000 * 119.93322 * 179.72103 * 6 5 4 33 33 H 1.09000 * 109.46981 * 20.00176 * 8 7 6 34 34 H 1.08997 * 109.47536 * 140.00076 * 8 7 6 35 35 H 1.08997 * 109.46961 * 184.00337 * 10 9 8 36 36 H 1.09002 * 109.46683 * 303.99997 * 10 9 8 37 37 H 0.96994 * 119.99838 * 180.02562 * 14 13 11 38 38 H 1.08997 * 109.46785 * 283.70278 * 19 9 8 39 39 H 1.09000 * 109.46993 * 43.70122 * 19 9 8 40 40 H 1.08003 * 126.58801 * 0.03090 * 21 20 19 41 41 H 1.07998 * 126.57847 * 180.16847 * 22 21 20 42 42 H 1.07996 * 125.79398 * 179.74837 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2924 2.3751 -0.0005 5 6 1.9217 3.6053 0.0000 6 6 3.3024 3.6777 0.0005 7 6 4.0580 2.5199 0.0011 8 6 5.5627 2.6024 0.0011 9 7 6.0648 2.3886 -1.3628 10 6 5.6548 3.4833 -2.2524 11 6 6.2868 4.7705 -1.7892 12 1 6.9849 4.7636 -0.9652 13 6 5.9738 5.9573 -2.4175 14 7 5.1233 5.9660 -3.4207 15 14 6.7566 7.5531 -1.8429 16 1 7.6702 7.2749 -0.7058 17 1 7.5268 8.1569 -2.9598 18 1 5.6955 8.4961 -1.4068 19 6 7.5249 2.2258 -1.3668 20 6 7.9595 1.6218 -2.6772 21 6 8.3606 2.3056 -3.7639 22 6 8.6753 1.3492 -4.7565 23 6 8.4397 0.1385 -4.2197 24 8 8.0063 0.3098 -2.9601 25 6 3.4333 1.2855 0.0005 26 9 4.1713 0.1539 0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 0.2137 2.3201 -0.0014 31 1 1.3342 4.5115 -0.0008 32 1 3.7916 4.6405 -0.0036 33 1 5.8725 3.5867 0.3522 34 1 5.9686 1.8366 0.6619 35 1 5.9787 3.2651 -3.2701 36 1 4.5696 3.5826 -2.2299 37 1 4.9035 6.8008 -3.8628 38 1 7.9992 3.1990 -1.2401 39 1 7.8194 1.5688 -0.5484 40 1 8.4312 3.3791 -3.8592 41 1 9.0328 1.5519 -5.7552 42 1 8.5756 -0.8104 -4.7173 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192934843.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:18 Heat of formation + Delta-G solvation = -29.451344 kcal Electronic energy + Delta-G solvation = -27159.900520 eV Core-core repulsion = 23215.098816 eV Total energy + Delta-G solvation = -3944.801704 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.22161 -41.89322 -39.72960 -37.86754 -36.28026 -32.57846 -32.38199 -31.39195 -29.95140 -29.30771 -27.43874 -26.96015 -25.54335 -24.10548 -22.21793 -21.74153 -21.07081 -20.22121 -19.50658 -17.79955 -16.91936 -16.64995 -16.48415 -16.18804 -15.94212 -15.57263 -14.98927 -14.76645 -14.44915 -14.18701 -14.14822 -14.09644 -13.66672 -13.35242 -12.63525 -12.54624 -12.21512 -12.12539 -12.05255 -12.01993 -11.88770 -11.32841 -11.22931 -11.03166 -10.95904 -10.88876 -10.60863 -10.58133 -10.31893 -10.06702 -9.69447 -9.26846 -8.47929 -8.37930 -7.85787 -7.82630 -7.26532 -6.07294 -4.17115 1.49663 1.66506 2.34957 3.21080 3.24760 3.30913 3.31089 3.32523 3.63692 3.95210 4.34510 4.64278 4.93056 5.04640 5.12457 5.16915 5.22935 5.30518 5.38880 5.41996 5.54879 5.62021 5.64573 5.66017 5.74858 5.92157 6.12652 6.20410 6.31376 6.38220 6.42354 6.55046 6.64984 6.71879 6.75100 6.91247 6.98080 7.14544 7.21103 7.51161 7.55116 7.77973 7.87891 7.97639 8.15275 8.22568 8.93044 9.49203 10.97368 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.009430 B = 0.005536 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2968.662651 B = 5056.184913 C = 7285.982684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.314 6.314 3 C 0.078 3.922 4 C -0.188 4.188 5 C -0.097 4.097 6 C -0.097 4.097 7 C -0.058 4.058 8 C 0.100 3.900 9 N -0.533 5.533 10 C 0.181 3.819 11 C -0.550 4.550 12 H 0.058 0.942 13 C 0.071 3.929 14 N -0.884 5.884 15 Si 0.882 3.118 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C 0.134 3.866 20 C 0.020 3.980 21 C -0.199 4.199 22 C -0.214 4.214 23 C -0.062 4.062 24 O -0.175 6.175 25 C 0.088 3.912 26 F -0.130 7.130 27 H 0.055 0.945 28 H 0.097 0.903 29 H 0.053 0.947 30 H 0.129 0.871 31 H 0.127 0.873 32 H 0.141 0.859 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.034 0.966 36 H 0.040 0.960 37 H 0.261 0.739 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.150 0.850 41 H 0.139 0.861 42 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.193 -8.065 5.545 10.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.228 6.228 3 C 0.033 3.967 4 C -0.207 4.207 5 C -0.115 4.115 6 C -0.116 4.116 7 C -0.059 4.059 8 C -0.027 4.027 9 N -0.257 5.257 10 C 0.056 3.944 11 C -0.589 4.589 12 H 0.076 0.924 13 C -0.133 4.133 14 N -0.522 5.522 15 Si 0.710 3.290 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.210 1.210 19 C 0.006 3.994 20 C -0.031 4.031 21 C -0.219 4.219 22 C -0.233 4.233 23 C -0.130 4.130 24 O -0.071 6.071 25 C 0.067 3.933 26 F -0.108 7.108 27 H 0.073 0.927 28 H 0.115 0.885 29 H 0.072 0.928 30 H 0.147 0.853 31 H 0.145 0.855 32 H 0.159 0.841 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.052 0.948 36 H 0.058 0.942 37 H 0.071 0.929 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.167 0.833 41 H 0.157 0.843 42 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -4.458 -8.855 5.443 11.310 hybrid contribution 0.519 1.872 -0.045 1.943 sum -3.939 -6.984 5.398 9.666 Atomic orbital electron populations 1.23014 0.78718 1.03612 1.01234 1.86104 1.21073 1.26287 1.89348 1.18916 0.90770 0.85252 1.01808 1.20995 0.99597 0.91715 1.08430 1.20938 0.94757 0.96817 0.99024 1.21092 0.93166 0.98572 0.98724 1.19719 0.96868 0.90511 0.98836 1.20809 0.89038 1.01172 0.91725 1.62501 1.08447 1.46927 1.07799 1.19895 0.97169 0.85272 0.92114 1.21679 1.26776 0.93096 1.17329 0.92428 1.24899 0.94850 0.98735 0.94796 1.69964 1.33374 1.26897 1.21930 0.86702 0.79380 0.84147 0.78780 1.19791 1.21009 1.20981 1.20414 0.90526 0.98810 0.89624 1.22419 1.02373 0.79743 0.98550 1.21669 1.06497 1.00915 0.92835 1.21776 1.07808 0.92767 1.00999 1.23794 1.05505 0.99814 0.83919 1.84000 1.66239 1.27454 1.29438 1.16775 0.85397 0.82857 1.08233 1.91467 1.76525 1.48741 1.94072 0.92680 0.88481 0.92830 0.85300 0.85531 0.84075 0.91833 0.91440 0.94757 0.94168 0.92864 0.89926 0.91268 0.83272 0.84275 0.79037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.31 -4.88 10.36 -19.60 -0.20 -5.08 16 3 C 0.08 1.31 6.69 -39.18 -0.26 1.05 16 4 C -0.19 -2.75 9.04 -39.45 -0.36 -3.11 16 5 C -0.10 -1.49 10.04 -39.59 -0.40 -1.89 16 6 C -0.10 -1.73 8.61 -39.57 -0.34 -2.07 16 7 C -0.06 -1.09 4.58 -104.58 -0.48 -1.57 16 8 C 0.10 1.90 4.64 -4.97 -0.02 1.88 16 9 N -0.53 -11.35 4.65 -238.96 -1.11 -12.46 16 10 C 0.18 4.45 4.73 -4.98 -0.02 4.42 16 11 C -0.55 -13.76 7.34 -34.44 -0.25 -14.02 16 12 H 0.06 1.41 5.95 -52.49 -0.31 1.10 16 13 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 14 N -0.88 -24.62 13.29 55.43 0.74 -23.88 16 15 Si 0.88 20.12 29.54 -169.99 -5.02 15.10 16 16 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 C 0.13 2.61 5.34 -4.97 -0.03 2.58 16 20 C 0.02 0.39 6.31 -35.63 -0.22 0.17 16 21 C -0.20 -3.94 9.82 -39.70 -0.39 -4.33 16 22 C -0.21 -3.65 10.91 -39.70 -0.43 -4.08 16 23 C -0.06 -1.00 12.09 29.42 0.36 -0.65 16 24 O -0.18 -3.36 10.65 5.70 0.06 -3.30 16 25 C 0.09 1.65 7.25 -39.30 -0.29 1.37 16 26 F -0.13 -2.58 16.51 2.25 0.04 -2.54 16 27 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 28 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 30 H 0.13 1.46 6.30 -52.48 -0.33 1.13 16 31 H 0.13 1.63 8.06 -52.48 -0.42 1.21 16 32 H 0.14 2.63 8.04 -52.49 -0.42 2.21 16 33 H 0.06 1.22 6.52 -51.93 -0.34 0.88 16 34 H 0.07 1.17 7.66 -51.93 -0.40 0.77 16 35 H 0.03 0.94 6.74 -51.93 -0.35 0.59 16 36 H 0.04 1.08 6.42 -51.93 -0.33 0.74 16 37 H 0.26 6.95 8.31 -40.82 -0.34 6.62 16 38 H 0.08 1.65 6.08 -51.93 -0.32 1.34 16 39 H 0.07 1.19 7.80 -51.93 -0.41 0.79 16 40 H 0.15 3.09 8.06 -52.48 -0.42 2.67 16 41 H 0.14 2.00 8.06 -52.49 -0.42 1.58 16 42 H 0.19 2.20 8.06 -52.49 -0.42 1.78 16 LS Contribution 354.49 15.07 5.34 5.34 Total: -1.00 -30.40 354.49 -7.65 -38.05 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -5.25 Total: 5.96 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: -2.25 Total: -17.20 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: -0.37 Total: -36.34 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: -0.14 Total: -8.37 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.04 Total: -2.54 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.40 -7.65 -38.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192934843.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.602 kcal (2) G-P(sol) polarization free energy of solvation -30.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds