Wall clock time and date at job start Tue Mar 31 2020 12:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46504 * 119.99636 * 2 1 4 4 C 1.50697 * 109.47059 * 269.99732 * 3 2 1 5 5 H 1.08007 * 120.00226 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00580 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99489 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 120.00558 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.46943 * 90.00177 * 8 6 4 10 10 H 1.48498 * 109.47089 * 210.00097 * 8 6 4 11 11 H 1.48497 * 109.47025 * 330.00721 * 8 6 4 12 12 C 1.34773 * 120.00777 * 179.97438 * 2 1 3 13 13 O 1.21274 * 120.00597 * 175.59887 * 12 2 1 14 14 C 1.50710 * 119.99533 * 355.60101 * 12 2 1 15 15 S 1.81400 * 110.43339 * 48.89909 * 14 12 2 16 16 C 1.76196 * 102.99983 * 55.22775 * 15 14 12 17 17 C 1.38974 * 120.08249 * 5.29967 * 16 15 14 18 18 C 1.38078 * 119.91833 * 179.67651 * 17 16 15 19 19 C 1.38309 * 120.08136 * 0.62680 * 18 17 16 20 20 C 1.38307 * 120.15815 * 359.67832 * 19 18 17 21 21 C 1.38080 * 120.07936 * 359.97438 * 20 19 18 22 22 C 1.54886 * 110.48327 * 286.35957 * 14 12 2 23 23 C 1.55245 * 102.58656 * 279.18646 * 22 14 12 24 24 C 1.54264 * 104.23128 * 322.08476 * 23 22 14 25 25 C 1.53875 * 106.60039 * 23.61295 * 24 23 22 26 26 H 1.09003 * 109.47342 * 95.15710 * 1 2 3 27 27 H 1.09002 * 109.46722 * 215.15070 * 1 2 3 28 28 H 1.08997 * 109.47389 * 335.15067 * 1 2 3 29 29 H 1.08998 * 109.47050 * 150.00041 * 3 2 1 30 30 H 1.08995 * 109.47306 * 29.99785 * 3 2 1 31 31 H 0.97004 * 120.00029 * 180.02562 * 7 6 4 32 32 H 1.07997 * 120.03525 * 0.02562 * 17 16 15 33 33 H 1.08004 * 119.96310 * 180.32047 * 18 17 16 34 34 H 1.07993 * 119.92052 * 179.69427 * 19 18 17 35 35 H 1.07998 * 119.95732 * 180.02562 * 20 19 18 36 36 H 1.07996 * 120.03660 * 180.02562 * 21 20 19 37 37 H 1.09001 * 110.76180 * 37.57875 * 22 14 12 38 38 H 1.08997 * 110.75600 * 160.95158 * 22 14 12 39 39 H 1.08998 * 110.46533 * 203.39897 * 23 22 14 40 40 H 1.08996 * 110.58046 * 80.83216 * 23 22 14 41 41 H 1.08992 * 110.03374 * 264.32846 * 24 23 22 42 42 H 1.08996 * 110.03108 * 142.89261 * 24 23 22 43 43 H 1.08994 * 110.03371 * 240.71635 * 25 24 23 44 44 H 1.08997 * 110.03508 * 119.28005 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0974 1.0962 -2.2418 6 6 3.1258 2.8780 -1.6729 7 7 3.5531 3.6182 -0.6733 8 14 3.4378 3.4169 -3.4341 9 1 2.3076 4.2591 -3.9016 10 1 4.6977 4.2004 -3.4962 11 1 3.5560 2.2195 -4.3044 12 6 2.1390 -1.1671 0.0005 13 8 3.3491 -1.1686 -0.0801 14 6 1.3888 -2.4703 0.1012 15 16 0.0222 -2.5082 -1.0910 16 6 0.8262 -2.1886 -2.6259 17 6 2.2118 -2.0954 -2.6803 18 6 2.8388 -1.8515 -3.8861 19 6 2.0889 -1.6870 -5.0366 20 6 0.7095 -1.7727 -4.9851 21 6 0.0760 -2.0235 -3.7841 22 6 0.8581 -2.6804 1.5411 23 6 2.1088 -3.2175 2.2876 24 6 2.7994 -4.1361 1.2586 25 6 2.3417 -3.6611 -0.1316 26 1 -0.3634 -0.0924 -1.0235 27 1 -0.3633 -0.8403 0.5917 28 1 -0.3634 0.9325 0.4318 29 1 3.1498 1.1385 0.5138 30 1 1.6083 2.0284 0.5138 31 1 4.0292 4.4446 -0.8506 32 1 2.7976 -2.2193 -1.7816 33 1 3.9158 -1.7841 -3.9302 34 1 2.5817 -1.4914 -5.9774 35 1 0.1271 -1.6442 -5.8855 36 1 -1.0011 -2.0908 -3.7447 37 1 0.5241 -1.7362 1.9713 38 1 0.0549 -3.4171 1.5531 39 1 1.8117 -3.7868 3.1683 40 1 2.7685 -2.3969 2.5696 41 1 2.4954 -5.1705 1.4184 42 1 3.8821 -4.0468 1.3458 43 1 1.8156 -4.4650 -0.6464 44 1 3.2023 -3.3413 -0.7190 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265264204.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:00 Heat of formation + Delta-G solvation = 1.526162 kcal Electronic energy + Delta-G solvation = -26190.830627 eV Core-core repulsion = 22813.585384 eV Total energy + Delta-G solvation = -3377.245243 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.09175 -38.50027 -36.80196 -34.92143 -32.61023 -31.02430 -30.65556 -29.50598 -28.67832 -27.47928 -25.79046 -23.43693 -22.52656 -22.33229 -21.07994 -20.44055 -18.55474 -17.69868 -16.90010 -16.48133 -15.84959 -15.63831 -15.36081 -14.86647 -14.58351 -14.36490 -14.14567 -13.69553 -13.35451 -13.03557 -12.94209 -12.77620 -12.41400 -12.21212 -12.07888 -11.99994 -11.63954 -11.37731 -11.23638 -11.21766 -10.97901 -10.90384 -10.89707 -10.57554 -10.55430 -10.31584 -10.17792 -10.10166 -9.61913 -9.35367 -8.95291 -8.64479 -8.41615 -7.64489 -6.99134 -6.02576 -4.05756 1.46335 1.59410 1.69034 2.36277 3.30894 3.36465 3.38709 3.44810 3.81807 4.02547 4.40741 4.45420 4.51734 4.88304 5.11404 5.15864 5.21225 5.32061 5.33170 5.36404 5.39813 5.46729 5.61277 5.66122 5.72915 5.83424 5.85033 5.91255 5.97160 6.03883 6.08766 6.17113 6.17633 6.29443 6.39631 6.43760 6.57506 6.66095 6.83619 7.02299 7.20392 7.39094 7.53029 7.94118 8.24733 8.35066 8.86042 9.03109 9.58785 11.05719 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.011498 B = 0.006761 C = 0.005120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.717520 B = 4140.683202 C = 5467.511129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.586 5.586 3 C 0.247 3.753 4 C -0.517 4.517 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.897 5.897 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.273 1.273 12 C 0.520 3.480 13 O -0.530 6.530 14 C -0.077 4.077 15 S -0.100 6.100 16 C -0.086 4.086 17 C -0.127 4.127 18 C -0.094 4.094 19 C -0.124 4.124 20 C -0.110 4.110 21 C -0.103 4.103 22 C -0.093 4.093 23 C -0.119 4.119 24 C -0.115 4.115 25 C -0.109 4.109 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.042 0.958 30 H 0.033 0.967 31 H 0.262 0.738 32 H 0.150 0.850 33 H 0.122 0.878 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.078 0.922 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.634 -15.027 0.229 16.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.316 5.316 3 C 0.128 3.872 4 C -0.556 4.556 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.536 5.536 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.197 1.197 12 C 0.303 3.697 13 O -0.408 6.408 14 C -0.190 4.190 15 S 0.148 5.852 16 C -0.199 4.199 17 C -0.149 4.149 18 C -0.114 4.114 19 C -0.145 4.145 20 C -0.130 4.130 21 C -0.126 4.126 22 C -0.132 4.132 23 C -0.158 4.158 24 C -0.154 4.154 25 C -0.148 4.148 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.167 0.833 33 H 0.140 0.860 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.140 0.860 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.096 0.904 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.130 -15.022 0.552 17.090 hybrid contribution 1.392 0.900 -1.427 2.188 sum -6.737 -14.122 -0.876 15.671 Atomic orbital electron populations 1.22091 0.80922 1.01000 1.02095 1.48006 1.06520 1.07230 1.69890 1.19343 0.92298 0.77784 0.97733 1.21390 1.35937 1.06055 0.92182 0.92356 1.24897 0.95479 0.96430 0.97203 1.69931 1.38753 1.14341 1.30615 0.86561 0.77618 0.78677 0.85072 1.20677 1.21167 1.19735 1.19586 0.87743 0.84272 0.78055 1.90663 1.13471 1.86313 1.50388 1.24301 0.97465 0.98741 0.98534 1.84967 1.14102 1.89120 0.97029 1.21629 0.96459 1.05209 0.96557 1.22024 0.93220 0.99447 1.00227 1.21064 1.00059 0.97968 0.92308 1.21151 0.94155 1.00783 0.98395 1.20951 0.94651 1.00257 0.97164 1.20630 0.99050 1.01616 0.91346 1.22494 0.98544 1.02387 0.89803 1.22409 0.96074 0.99576 0.97720 1.22051 1.00922 0.98728 0.93664 1.22591 0.98885 0.94578 0.98781 0.92009 0.92317 0.91948 0.94040 0.94909 0.92824 0.83317 0.85992 0.86295 0.86020 0.86023 0.89896 0.89723 0.90995 0.90871 0.91675 0.91196 0.90360 0.89327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.45 8.68 59.85 0.52 1.97 16 2 N -0.59 -12.59 2.86 -182.96 -0.52 -13.12 16 3 C 0.25 6.49 5.17 -5.19 -0.03 6.46 16 4 C -0.52 -14.77 9.39 -34.44 -0.32 -15.09 16 5 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 6 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 7 N -0.90 -26.80 13.29 55.43 0.74 -26.07 16 8 Si 0.89 22.30 29.54 -169.99 -5.02 17.28 16 9 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 12 C 0.52 10.62 4.21 -10.98 -0.05 10.57 16 13 O -0.53 -12.72 14.09 5.56 0.08 -12.64 16 14 C -0.08 -1.20 0.25 -90.11 -0.02 -1.22 16 15 S -0.10 -1.49 16.51 -107.50 -1.78 -3.26 16 16 C -0.09 -1.48 5.98 -39.03 -0.23 -1.71 16 17 C -0.13 -2.38 8.03 -39.37 -0.32 -2.69 16 18 C -0.09 -1.68 10.04 -39.61 -0.40 -2.07 16 19 C -0.12 -1.95 10.04 -39.53 -0.40 -2.35 16 20 C -0.11 -1.62 10.04 -39.61 -0.40 -2.02 16 21 C -0.10 -1.59 9.79 -39.37 -0.39 -1.97 16 22 C -0.09 -1.19 5.12 -24.55 -0.13 -1.31 16 23 C -0.12 -1.44 6.62 -24.88 -0.16 -1.60 16 24 C -0.11 -1.40 6.80 -25.61 -0.17 -1.57 16 25 C -0.11 -1.57 4.69 -25.61 -0.12 -1.69 16 26 H 0.06 1.11 6.95 -51.93 -0.36 0.75 16 27 H 0.06 0.85 4.28 -51.90 -0.22 0.63 16 28 H 0.06 1.04 7.83 -51.93 -0.41 0.63 16 29 H 0.04 1.21 7.49 -51.93 -0.39 0.83 16 30 H 0.03 0.87 7.86 -51.93 -0.41 0.47 16 31 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.15 2.96 1.98 -52.49 -0.10 2.86 16 33 H 0.12 2.05 8.06 -52.48 -0.42 1.62 16 34 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 35 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 36 H 0.12 1.61 8.06 -52.49 -0.42 1.18 16 37 H 0.08 1.08 6.65 -51.93 -0.35 0.73 16 38 H 0.08 0.90 8.06 -51.93 -0.42 0.48 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.08 1.01 7.80 -51.93 -0.40 0.61 16 44 H 0.09 1.48 5.31 -51.93 -0.28 1.20 16 LS Contribution 353.05 15.07 5.32 5.32 Total: -1.00 -32.40 353.05 -10.16 -42.55 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -6.26 Total: 4.57 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: -2.71 Total: -14.63 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: 0.21 Total: -39.19 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: 0.08 Total: -12.64 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -1.78 Total: -3.26 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.40 -10.16 -42.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265264204.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.081 kcal (2) G-P(sol) polarization free energy of solvation -32.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds