Wall clock time and date at job start Tue Mar 31 2020 12:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46504 * 119.99636 * 2 1 4 4 C 1.50697 * 109.47059 * 269.99732 * 3 2 1 5 5 H 1.08007 * 120.00226 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00580 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99489 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 120.00558 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.46943 * 90.00177 * 8 6 4 10 10 H 1.48498 * 109.47089 * 210.00097 * 8 6 4 11 11 H 1.48497 * 109.47025 * 330.00721 * 8 6 4 12 12 C 1.34773 * 120.00777 * 179.97438 * 2 1 3 13 13 O 1.21274 * 120.00597 * 175.59887 * 12 2 1 14 14 C 1.50710 * 119.99533 * 355.60101 * 12 2 1 15 15 S 1.81400 * 110.43339 * 48.89909 * 14 12 2 16 16 C 1.76196 * 102.99983 * 55.22775 * 15 14 12 17 17 C 1.38974 * 120.08249 * 5.29967 * 16 15 14 18 18 C 1.38078 * 119.91833 * 179.67651 * 17 16 15 19 19 C 1.38309 * 120.08136 * 0.62680 * 18 17 16 20 20 C 1.38307 * 120.15815 * 359.67832 * 19 18 17 21 21 C 1.38080 * 120.07936 * 359.97438 * 20 19 18 22 22 C 1.54886 * 110.48327 * 286.35957 * 14 12 2 23 23 C 1.55245 * 102.58656 * 279.18646 * 22 14 12 24 24 C 1.54264 * 104.23128 * 322.08476 * 23 22 14 25 25 C 1.53875 * 106.60039 * 23.61295 * 24 23 22 26 26 H 1.09003 * 109.47342 * 95.15710 * 1 2 3 27 27 H 1.09002 * 109.46722 * 215.15070 * 1 2 3 28 28 H 1.08997 * 109.47389 * 335.15067 * 1 2 3 29 29 H 1.08998 * 109.47050 * 150.00041 * 3 2 1 30 30 H 1.08995 * 109.47306 * 29.99785 * 3 2 1 31 31 H 0.97004 * 120.00029 * 180.02562 * 7 6 4 32 32 H 1.07997 * 120.03525 * 0.02562 * 17 16 15 33 33 H 1.08004 * 119.96310 * 180.32047 * 18 17 16 34 34 H 1.07993 * 119.92052 * 179.69427 * 19 18 17 35 35 H 1.07998 * 119.95732 * 180.02562 * 20 19 18 36 36 H 1.07996 * 120.03660 * 180.02562 * 21 20 19 37 37 H 1.09001 * 110.76180 * 37.57875 * 22 14 12 38 38 H 1.08997 * 110.75600 * 160.95158 * 22 14 12 39 39 H 1.08998 * 110.46533 * 203.39897 * 23 22 14 40 40 H 1.08996 * 110.58046 * 80.83216 * 23 22 14 41 41 H 1.08992 * 110.03374 * 264.32846 * 24 23 22 42 42 H 1.08996 * 110.03108 * 142.89261 * 24 23 22 43 43 H 1.08994 * 110.03371 * 240.71635 * 25 24 23 44 44 H 1.08997 * 110.03508 * 119.28005 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0974 1.0962 -2.2418 6 6 3.1258 2.8780 -1.6729 7 7 3.5531 3.6182 -0.6733 8 14 3.4378 3.4169 -3.4341 9 1 2.3076 4.2591 -3.9016 10 1 4.6977 4.2004 -3.4962 11 1 3.5560 2.2195 -4.3044 12 6 2.1390 -1.1671 0.0005 13 8 3.3491 -1.1686 -0.0801 14 6 1.3888 -2.4703 0.1012 15 16 0.0222 -2.5082 -1.0910 16 6 0.8262 -2.1886 -2.6259 17 6 2.2118 -2.0954 -2.6803 18 6 2.8388 -1.8515 -3.8861 19 6 2.0889 -1.6870 -5.0366 20 6 0.7095 -1.7727 -4.9851 21 6 0.0760 -2.0235 -3.7841 22 6 0.8581 -2.6804 1.5411 23 6 2.1088 -3.2175 2.2876 24 6 2.7994 -4.1361 1.2586 25 6 2.3417 -3.6611 -0.1316 26 1 -0.3634 -0.0924 -1.0235 27 1 -0.3633 -0.8403 0.5917 28 1 -0.3634 0.9325 0.4318 29 1 3.1498 1.1385 0.5138 30 1 1.6083 2.0284 0.5138 31 1 4.0292 4.4446 -0.8506 32 1 2.7976 -2.2193 -1.7816 33 1 3.9158 -1.7841 -3.9302 34 1 2.5817 -1.4914 -5.9774 35 1 0.1271 -1.6442 -5.8855 36 1 -1.0011 -2.0908 -3.7447 37 1 0.5241 -1.7362 1.9713 38 1 0.0549 -3.4171 1.5531 39 1 1.8117 -3.7868 3.1683 40 1 2.7685 -2.3969 2.5696 41 1 2.4954 -5.1705 1.4184 42 1 3.8821 -4.0468 1.3458 43 1 1.8156 -4.4650 -0.6464 44 1 3.2023 -3.3413 -0.7190 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265264204.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:59 Heat of formation + Delta-G solvation = -16.152381 kcal Electronic energy + Delta-G solvation = -26191.597226 eV Core-core repulsion = 22813.585384 eV Total energy + Delta-G solvation = -3378.011842 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.56679 -39.74133 -38.13381 -36.69043 -34.76373 -32.26046 -31.89950 -30.96599 -29.77453 -29.21255 -27.42723 -25.33113 -23.79605 -23.58292 -22.52725 -21.52619 -20.00400 -19.03495 -18.63233 -18.29892 -17.36925 -16.92536 -16.68587 -16.57834 -15.89781 -15.81797 -15.73785 -14.93920 -14.71330 -14.56117 -14.22233 -14.11408 -13.99029 -13.77739 -13.56056 -13.48498 -13.17703 -12.92021 -12.79152 -12.56714 -12.51716 -12.33767 -12.24369 -12.04716 -12.00306 -11.80661 -11.71218 -11.52145 -11.29352 -10.69902 -10.65287 -10.48072 -9.91924 -9.46403 -8.24907 -8.19442 -6.36992 0.20691 0.36248 0.42057 1.07010 1.30661 1.32983 1.43908 1.86848 2.19280 2.37749 2.76080 3.04945 3.22636 3.35606 3.59611 3.91187 4.00910 4.10452 4.19205 4.28865 4.32033 4.36956 4.43355 4.47501 4.56307 4.63787 4.69633 4.74576 4.81913 4.88950 4.94379 4.97702 5.03316 5.05121 5.14254 5.16260 5.18666 5.29367 5.40423 5.43563 5.54329 5.56827 5.79310 5.98335 6.04139 6.63306 6.72508 7.22552 7.37805 8.82539 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.011498 B = 0.006761 C = 0.005120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.717520 B = 4140.683202 C = 5467.511129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.596 5.596 3 C 0.264 3.736 4 C -0.527 4.527 5 H 0.046 0.954 6 C 0.011 3.989 7 N -0.927 5.927 8 Si 0.956 3.044 9 H -0.264 1.264 10 H -0.279 1.279 11 H -0.274 1.274 12 C 0.518 3.482 13 O -0.577 6.577 14 C -0.079 4.079 15 S -0.055 6.055 16 C -0.110 4.110 17 C -0.155 4.155 18 C -0.123 4.123 19 C -0.130 4.130 20 C -0.107 4.107 21 C -0.107 4.107 22 C -0.090 4.090 23 C -0.117 4.117 24 C -0.112 4.112 25 C -0.108 4.108 26 H 0.060 0.940 27 H 0.092 0.908 28 H 0.068 0.932 29 H -0.001 1.001 30 H 0.025 0.975 31 H 0.266 0.734 32 H 0.131 0.869 33 H 0.114 0.886 34 H 0.143 0.857 35 H 0.160 0.840 36 H 0.149 0.851 37 H 0.080 0.920 38 H 0.120 0.880 39 H 0.108 0.892 40 H 0.041 0.959 41 H 0.099 0.901 42 H 0.055 0.945 43 H 0.096 0.904 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.421 -16.475 -0.707 19.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.326 5.326 3 C 0.143 3.857 4 C -0.566 4.566 5 H 0.064 0.936 6 C -0.187 4.187 7 N -0.567 5.567 8 Si 0.781 3.219 9 H -0.189 1.189 10 H -0.205 1.205 11 H -0.199 1.199 12 C 0.304 3.696 13 O -0.458 6.458 14 C -0.192 4.192 15 S 0.193 5.807 16 C -0.222 4.222 17 C -0.178 4.178 18 C -0.143 4.143 19 C -0.150 4.150 20 C -0.126 4.126 21 C -0.130 4.130 22 C -0.129 4.129 23 C -0.156 4.156 24 C -0.151 4.151 25 C -0.147 4.147 26 H 0.078 0.922 27 H 0.110 0.890 28 H 0.086 0.914 29 H 0.017 0.983 30 H 0.043 0.957 31 H 0.075 0.925 32 H 0.149 0.851 33 H 0.132 0.868 34 H 0.161 0.839 35 H 0.177 0.823 36 H 0.167 0.833 37 H 0.098 0.902 38 H 0.138 0.862 39 H 0.126 0.874 40 H 0.060 0.940 41 H 0.118 0.882 42 H 0.074 0.926 43 H 0.114 0.886 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.953 -16.489 -0.380 19.799 hybrid contribution 2.285 1.340 -1.151 2.888 sum -8.668 -15.149 -1.531 17.520 Atomic orbital electron populations 1.22311 0.78290 1.02873 1.02674 1.47970 1.08097 1.06108 1.70381 1.18792 0.90881 0.79928 0.96117 1.21537 1.36191 1.06114 0.92734 0.93601 1.25735 0.95096 0.96486 1.01427 1.70036 1.39245 1.14777 1.32691 0.85572 0.78135 0.78251 0.79939 1.18908 1.20475 1.19885 1.20395 0.87464 0.85487 0.76230 1.90630 1.15951 1.87256 1.51988 1.24301 0.98106 0.95754 1.01071 1.84621 1.12250 1.88764 0.95110 1.21955 0.96112 1.05564 0.98596 1.22007 0.94357 1.01451 1.00021 1.21239 1.00241 0.99452 0.93352 1.21482 0.94979 1.00072 0.98451 1.21426 0.94393 0.98387 0.98388 1.21057 1.00364 1.00589 0.90997 1.22642 0.99627 1.03374 0.87275 1.22418 0.95253 0.98943 0.98974 1.22082 1.00188 1.00603 0.92215 1.22593 0.97698 0.94425 0.99969 0.92185 0.88989 0.91369 0.98335 0.95711 0.92480 0.85145 0.86755 0.83906 0.82270 0.83350 0.90170 0.86162 0.87378 0.94011 0.88200 0.92611 0.88570 0.92558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.77 8.68 127.77 1.11 3.88 16 2 N -0.60 -26.35 2.86 -851.14 -2.43 -28.79 16 3 C 0.26 14.56 5.17 85.63 0.44 15.00 16 4 C -0.53 -31.18 9.39 25.60 0.24 -30.94 16 5 H 0.05 2.78 7.81 -2.91 -0.02 2.75 16 6 C 0.01 0.67 5.46 84.65 0.46 1.13 16 7 N -0.93 -56.87 13.29 21.45 0.28 -56.59 16 8 Si 0.96 46.28 29.54 68.60 2.03 48.30 16 9 H -0.26 -12.03 7.11 99.48 0.71 -11.33 16 10 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 11 H -0.27 -13.21 7.11 99.48 0.71 -12.50 16 12 C 0.52 21.95 4.21 87.66 0.37 22.32 16 13 O -0.58 -29.75 14.09 -3.01 -0.04 -29.79 16 14 C -0.08 -2.41 0.25 -10.46 0.00 -2.41 16 15 S -0.06 -1.53 16.51 -56.49 -0.93 -2.46 16 16 C -0.11 -3.68 5.98 22.62 0.14 -3.55 16 17 C -0.16 -6.04 8.03 22.41 0.18 -5.86 16 18 C -0.12 -4.54 10.04 22.25 0.22 -4.32 16 19 C -0.13 -3.93 10.04 22.30 0.22 -3.71 16 20 C -0.11 -2.85 10.04 22.25 0.22 -2.62 16 21 C -0.11 -3.04 9.79 22.41 0.22 -2.82 16 22 C -0.09 -2.08 5.12 32.01 0.16 -1.91 16 23 C -0.12 -2.64 6.62 31.79 0.21 -2.43 16 24 C -0.11 -2.59 6.80 31.32 0.21 -2.38 16 25 C -0.11 -3.07 4.69 31.32 0.15 -2.93 16 26 H 0.06 2.07 6.95 -2.39 -0.02 2.06 16 27 H 0.09 2.48 4.28 -2.40 -0.01 2.47 16 28 H 0.07 2.23 7.83 -2.39 -0.02 2.21 16 29 H 0.00 -0.09 7.49 -2.39 -0.02 -0.11 16 30 H 0.02 1.39 7.86 -2.39 -0.02 1.37 16 31 H 0.27 15.34 8.31 -92.71 -0.77 14.56 16 32 H 0.13 5.54 1.98 -2.91 -0.01 5.54 16 33 H 0.11 4.15 8.06 -2.91 -0.02 4.13 16 34 H 0.14 3.51 8.06 -2.91 -0.02 3.48 16 35 H 0.16 3.00 8.06 -2.91 -0.02 2.98 16 36 H 0.15 3.36 8.06 -2.91 -0.02 3.34 16 37 H 0.08 1.91 6.65 -2.39 -0.02 1.89 16 38 H 0.12 1.98 8.06 -2.39 -0.02 1.96 16 39 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.04 1.19 8.14 -2.39 -0.02 1.18 16 41 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.10 2.35 7.80 -2.39 -0.02 2.33 16 44 H 0.06 2.00 5.31 -2.39 -0.01 1.99 16 Total: -1.00 -74.82 353.05 4.47 -70.36 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: 1.00 Total: 22.52 kcal Atomic # 6 Polarization: -28.11 SS G_CDS: 4.56 Total: -23.55 kcal Atomic # 7 Polarization: -83.23 SS G_CDS: -2.15 Total: -85.37 kcal Atomic # 8 Polarization: -29.75 SS G_CDS: -0.04 Total: -29.79 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.30 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -0.93 Total: -2.46 kcal Total: -74.82 4.47 -70.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265264204.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.203 kcal (2) G-P(sol) polarization free energy of solvation -74.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds