Wall clock time and date at job start Tue Mar 31 2020 12:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35951 * 116.99872 * 2 1 4 4 C 1.38736 * 120.02823 * 359.72719 * 3 2 1 5 5 C 1.38132 * 119.96331 * 179.69771 * 4 3 2 6 6 C 1.38474 * 120.03346 * 0.57546 * 5 4 3 7 7 F 1.35092 * 119.97064 * 179.74300 * 6 5 4 8 8 C 1.38434 * 120.05687 * 359.72591 * 6 5 4 9 9 C 1.38169 * 120.03376 * 359.97316 * 8 6 5 10 10 C 1.50702 * 120.01567 * 180.02562 * 9 8 6 11 11 N 1.46900 * 109.46963 * 259.97924 * 10 9 8 12 12 C 1.46901 * 111.00107 * 66.04688 * 11 10 9 13 13 C 1.50708 * 109.46886 * 63.99535 * 12 11 10 14 14 H 1.07997 * 119.99697 * 4.43864 * 13 12 11 15 15 C 1.37875 * 119.99359 * 184.43598 * 13 12 11 16 16 N 1.31506 * 120.00681 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99574 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47197 * 90.00087 * 17 15 13 19 19 H 1.48501 * 109.47203 * 210.00355 * 17 15 13 20 20 H 1.48502 * 109.46998 * 330.00293 * 17 15 13 21 21 C 1.46902 * 110.99637 * 190.00005 * 11 10 9 22 22 C 1.50702 * 109.47038 * 163.70184 * 21 11 10 23 23 C 1.34510 * 125.79014 * 93.54987 * 22 21 11 24 24 C 1.41387 * 106.83713 * 179.89006 * 23 22 21 25 25 C 1.34514 * 106.84255 * 0.37072 * 24 23 22 26 26 O 1.34305 * 108.42024 * 359.77515 * 25 24 23 27 27 H 1.08999 * 109.46608 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46704 * 299.99671 * 1 2 3 29 29 H 1.08994 * 109.47150 * 59.99854 * 1 2 3 30 30 H 1.08000 * 120.01542 * 359.97438 * 4 3 2 31 31 H 1.08001 * 119.97737 * 180.27617 * 5 4 3 32 32 H 1.08002 * 119.97867 * 179.97438 * 8 6 5 33 33 H 1.09000 * 109.46818 * 19.98166 * 10 9 8 34 34 H 1.09004 * 109.47111 * 139.97842 * 10 9 8 35 35 H 1.08992 * 109.47055 * 183.99448 * 12 11 10 36 36 H 1.08995 * 109.47023 * 303.99951 * 12 11 10 37 37 H 0.96995 * 120.00786 * 180.02562 * 16 15 13 38 38 H 1.08996 * 109.47126 * 283.69930 * 21 11 10 39 39 H 1.09000 * 109.47096 * 43.70052 * 21 11 10 40 40 H 1.08001 * 126.58373 * 0.02562 * 23 22 21 41 41 H 1.08002 * 126.57746 * 180.16381 * 24 23 22 42 42 H 1.07997 * 125.79029 * 179.74584 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2912 2.3752 -0.0057 5 6 1.9196 3.6053 0.0006 6 6 3.3025 3.6771 0.0006 7 9 3.9158 4.8808 0.0015 8 6 4.0571 2.5165 0.0000 9 6 3.4311 1.2847 0.0000 10 6 4.2529 0.0215 -0.0001 11 7 4.3179 -0.5203 -1.3640 12 6 5.0624 0.3810 -2.2536 13 6 6.4934 0.4750 -1.7903 14 1 6.8352 -0.1337 -0.9663 15 6 7.3660 1.3381 -2.4185 16 7 6.9496 2.0796 -3.4215 17 14 9.1399 1.4541 -1.8447 18 1 9.9666 0.4711 -2.5900 19 1 9.6530 2.8247 -2.0967 20 1 9.2102 1.1588 -0.3910 21 6 4.9047 -1.8670 -1.3680 22 6 4.5978 -2.5448 -2.6786 23 6 5.3905 -2.5517 -3.7652 24 6 4.7183 -3.3012 -4.7578 25 6 3.5513 -3.7006 -4.2211 26 8 3.4837 -3.2395 -2.9615 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 0.2126 2.3195 -0.0106 31 1 1.3320 4.5115 0.0007 32 1 5.1355 2.5739 -0.0004 33 1 5.2606 0.2436 0.3510 34 1 3.7914 -0.7123 0.6608 35 1 5.0348 -0.0085 -3.2712 36 1 4.6074 1.3712 -2.2311 37 1 7.5635 2.6865 -3.8637 38 1 5.9847 -1.7931 -1.2414 39 1 4.4820 -2.4500 -0.5497 40 1 6.3562 -2.0776 -3.8605 41 1 5.0722 -3.5100 -5.7566 42 1 2.7965 -4.2914 -4.7187 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268004270.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:40 Heat of formation + Delta-G solvation = -47.962027 kcal Electronic energy + Delta-G solvation = -27308.496342 eV Core-core repulsion = 23362.891954 eV Total energy + Delta-G solvation = -3945.604388 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.76474 -43.29695 -41.15252 -38.77854 -37.75419 -34.59416 -33.83461 -33.05776 -31.01620 -30.65406 -29.01508 -28.01526 -27.01055 -25.94252 -23.47904 -23.16254 -22.48171 -21.75798 -21.03696 -18.96819 -18.67142 -17.99172 -17.81863 -17.77888 -17.15680 -16.75997 -16.63077 -16.26080 -15.81380 -15.73013 -15.56664 -15.44059 -15.15258 -14.55402 -14.21933 -14.01057 -13.73393 -13.62905 -13.52664 -13.35008 -13.18325 -13.03526 -12.83737 -12.64203 -12.52791 -12.23631 -12.22780 -11.99718 -11.73919 -11.65195 -11.56035 -10.70537 -10.54878 -9.95261 -9.29970 -8.98155 -8.91851 -8.10196 -6.28112 0.22254 0.31403 0.96501 1.35862 1.37820 1.46080 1.83042 2.27694 2.38273 2.46133 2.63591 3.15760 3.37124 3.57686 3.75502 3.85439 4.05177 4.19198 4.26060 4.27786 4.33202 4.47752 4.50296 4.52843 4.53462 4.70611 4.80716 4.83183 4.88270 5.00278 5.06477 5.16471 5.18060 5.21373 5.30113 5.38467 5.42859 5.46972 5.73261 5.81012 5.82912 6.06479 6.24785 6.41930 6.45480 6.56384 6.92038 7.42138 8.91977 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.008424 B = 0.006610 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3323.006820 B = 4235.179561 C = 6902.185386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.317 6.317 3 C 0.136 3.864 4 C -0.182 4.182 5 C -0.109 4.109 6 C 0.030 3.970 7 F -0.155 7.155 8 C -0.106 4.106 9 C -0.088 4.088 10 C 0.114 3.886 11 N -0.528 5.528 12 C 0.208 3.792 13 C -0.544 4.544 14 H 0.061 0.939 15 C 0.020 3.980 16 N -0.922 5.922 17 Si 0.943 3.057 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.264 1.264 21 C 0.136 3.864 22 C 0.002 3.998 23 C -0.222 4.222 24 C -0.231 4.231 25 C -0.043 4.043 26 O -0.183 6.183 27 H 0.114 0.886 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.173 0.827 31 H 0.164 0.836 32 H 0.118 0.882 33 H 0.039 0.961 34 H 0.090 0.910 35 H -0.001 1.001 36 H 0.008 0.992 37 H 0.261 0.739 38 H 0.066 0.934 39 H 0.095 0.905 40 H 0.124 0.876 41 H 0.162 0.838 42 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.775 -6.148 6.192 16.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.230 6.230 3 C 0.089 3.911 4 C -0.200 4.200 5 C -0.127 4.127 6 C 0.011 3.989 7 F -0.134 7.134 8 C -0.125 4.125 9 C -0.089 4.089 10 C -0.013 4.013 11 N -0.252 5.252 12 C 0.081 3.919 13 C -0.584 4.584 14 H 0.080 0.920 15 C -0.180 4.180 16 N -0.561 5.561 17 Si 0.769 3.231 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.189 1.189 21 C 0.008 3.992 22 C -0.048 4.048 23 C -0.242 4.242 24 C -0.249 4.249 25 C -0.110 4.110 26 O -0.079 6.079 27 H 0.133 0.867 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.190 0.810 31 H 0.181 0.819 32 H 0.136 0.864 33 H 0.057 0.943 34 H 0.109 0.891 35 H 0.017 0.983 36 H 0.026 0.974 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.114 0.886 40 H 0.142 0.858 41 H 0.180 0.820 42 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -14.343 -6.266 6.113 16.803 hybrid contribution 2.500 1.066 -0.259 2.730 sum -11.843 -5.199 5.854 14.197 Atomic orbital electron populations 1.23365 0.76700 1.05451 1.02255 1.86173 1.23085 1.25733 1.87968 1.18864 0.91133 0.85477 0.95604 1.21349 1.01657 0.90175 1.06822 1.21133 0.91306 1.00111 1.00196 1.17793 0.92039 0.79870 1.09213 1.91422 1.83907 1.43408 1.94706 1.20934 1.00340 0.91273 0.99992 1.18949 0.91633 0.94486 1.03859 1.20688 0.97135 0.93164 0.90348 1.62389 1.52365 1.01674 1.08723 1.19340 0.90318 0.90930 0.91287 1.21870 0.96881 1.22828 1.16772 0.92047 1.25646 1.02130 0.95252 0.94978 1.70071 1.36645 1.25995 1.23434 0.85784 0.81047 0.77167 0.79122 1.20165 1.21387 1.18869 1.20389 0.98824 0.89218 0.90719 1.22371 0.85529 0.98264 0.98672 1.21714 1.02716 1.05272 0.94531 1.22065 0.97006 1.04204 1.01673 1.24734 1.00615 1.03118 0.82499 1.83986 1.38312 1.54767 1.30880 0.86731 0.90829 0.92142 0.81015 0.81889 0.86436 0.94280 0.89144 0.98255 0.97353 0.93006 0.91570 0.88650 0.85770 0.82008 0.74014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.40 16 2 O -0.32 -9.11 9.73 -93.00 -0.90 -10.01 16 3 C 0.14 4.31 6.66 22.49 0.15 4.46 16 4 C -0.18 -4.69 9.04 22.36 0.20 -4.49 16 5 C -0.11 -3.05 10.02 22.30 0.22 -2.83 16 6 C 0.03 1.09 7.30 22.37 0.16 1.25 16 7 F -0.16 -5.92 17.26 44.97 0.78 -5.15 16 8 C -0.11 -4.26 8.60 22.30 0.19 -4.07 16 9 C -0.09 -3.32 4.59 -19.77 -0.09 -3.41 16 10 C 0.11 4.38 4.58 85.56 0.39 4.77 16 11 N -0.53 -22.67 4.65 -909.94 -4.23 -26.90 16 12 C 0.21 10.83 4.73 85.56 0.40 11.23 16 13 C -0.54 -29.10 7.34 25.60 0.19 -28.91 16 14 H 0.06 3.17 5.95 -2.91 -0.02 3.15 16 15 C 0.02 1.10 5.46 84.66 0.46 1.56 16 16 N -0.92 -55.13 13.28 21.45 0.28 -54.84 16 17 Si 0.94 43.86 29.54 68.60 2.03 45.89 16 18 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 19 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 20 H -0.26 -11.77 7.11 99.48 0.71 -11.07 16 21 C 0.14 5.30 5.34 85.56 0.46 5.75 16 22 C 0.00 0.09 6.31 24.83 0.16 0.24 16 23 C -0.22 -8.95 9.82 22.19 0.22 -8.73 16 24 C -0.23 -7.46 10.91 22.19 0.24 -7.22 16 25 C -0.04 -1.20 12.09 66.97 0.81 -0.40 16 26 O -0.18 -6.46 10.65 -2.54 -0.03 -6.49 16 27 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.07 0.94 7.67 -2.39 -0.02 0.92 16 29 H 0.06 0.97 7.65 -2.39 -0.02 0.95 16 30 H 0.17 2.96 6.30 -2.91 -0.02 2.94 16 31 H 0.16 3.43 8.06 -2.91 -0.02 3.41 16 32 H 0.12 5.30 8.04 -2.91 -0.02 5.28 16 33 H 0.04 1.61 6.52 -2.39 -0.02 1.60 16 34 H 0.09 3.04 7.57 -2.38 -0.02 3.02 16 35 H 0.00 -0.04 6.74 -2.39 -0.02 -0.05 16 36 H 0.01 0.48 6.42 -2.39 -0.02 0.47 16 37 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 38 H 0.07 2.75 6.08 -2.39 -0.01 2.73 16 39 H 0.10 3.15 7.80 -2.39 -0.02 3.13 16 40 H 0.12 5.53 8.06 -2.91 -0.02 5.50 16 41 H 0.16 4.33 8.06 -2.91 -0.02 4.30 16 42 H 0.24 4.08 8.06 -2.91 -0.02 4.06 16 Total: -1.00 -69.67 354.44 4.25 -65.41 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: 1.04 Total: 21.47 kcal Atomic # 6 Polarization: -34.66 SS G_CDS: 5.28 Total: -29.38 kcal Atomic # 7 Polarization: -77.80 SS G_CDS: -3.94 Total: -81.74 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: -0.93 Total: -16.50 kcal Atomic # 9 Polarization: -5.92 SS G_CDS: 0.78 Total: -5.15 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -69.67 4.25 -65.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268004270.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.452 kcal (2) G-P(sol) polarization free energy of solvation -69.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds