Wall clock time and date at job start Tue Mar 31 2020 12:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81394 * 102.99906 * 2 1 4 4 H 1.09005 * 109.47422 * 305.00325 * 3 2 1 5 5 C 1.53005 * 109.47456 * 64.99963 * 3 2 1 6 6 C 1.52992 * 109.47168 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.47185 * 299.99881 * 6 5 3 8 8 C 1.53000 * 109.47163 * 60.00283 * 7 6 5 9 9 H 1.08999 * 109.46931 * 60.00375 * 8 7 6 10 10 N 1.46499 * 109.47269 * 179.97438 * 8 7 6 11 11 C 1.34778 * 119.99830 * 275.00289 * 10 8 7 12 12 O 1.21582 * 120.00591 * 359.97438 * 11 10 8 13 13 C 1.47645 * 119.99732 * 180.02562 * 11 10 8 14 14 C 1.40012 * 119.89892 * 359.71835 * 13 11 10 15 15 C 1.36316 * 120.10634 * 179.71887 * 14 13 11 16 16 C 1.40883 * 119.89134 * 0.56067 * 15 14 13 17 17 C 1.41107 * 120.10193 * 179.73858 * 16 15 14 18 18 H 1.08001 * 120.00288 * 204.61381 * 17 16 15 19 19 C 1.40235 * 119.99890 * 24.61819 * 17 16 15 20 20 N 1.30637 * 120.00228 * 17.89521 * 19 17 16 21 21 Si 1.86798 * 119.99705 * 197.89383 * 19 17 16 22 22 H 1.48499 * 109.47497 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46716 * 120.00240 * 21 19 17 24 24 H 1.48497 * 109.47232 * 239.99860 * 21 19 17 25 25 C 1.40877 * 119.79478 * 359.71646 * 16 15 14 26 26 C 1.36315 * 119.89435 * 359.97438 * 25 16 15 27 27 C 1.52999 * 109.47130 * 185.00349 * 3 2 1 28 28 H 1.09003 * 109.47471 * 60.00173 * 1 2 3 29 29 H 1.09006 * 109.47206 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47568 * 300.00056 * 1 2 3 31 31 H 1.09001 * 109.46872 * 300.00199 * 5 3 2 32 32 H 1.09005 * 109.46510 * 59.99803 * 5 3 2 33 33 H 1.08999 * 109.47723 * 60.00005 * 6 5 3 34 34 H 1.09008 * 109.46934 * 180.02562 * 6 5 3 35 35 H 1.09005 * 109.47342 * 180.02562 * 7 6 5 36 36 H 1.09004 * 109.47493 * 300.00250 * 7 6 5 37 37 H 0.96996 * 120.00378 * 95.00128 * 10 8 7 38 38 H 1.08004 * 119.94161 * 359.97438 * 14 13 11 39 39 H 1.08004 * 120.04747 * 180.27921 * 15 14 13 40 40 H 0.97002 * 120.00683 * 180.02562 * 20 19 17 41 41 H 1.08002 * 120.05581 * 180.02562 * 25 16 15 42 42 H 1.08000 * 119.95286 * 180.02562 * 26 25 16 43 43 H 1.09004 * 109.47166 * 299.99769 * 27 3 2 44 44 H 1.08994 * 109.47482 * 59.99913 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7293 2.2542 -0.8418 5 6 1.7427 2.4016 1.3074 6 6 2.0863 3.8925 1.3070 7 6 3.6011 4.0667 1.1810 8 6 4.0804 3.4326 -0.1263 9 1 3.5875 3.9190 -0.9681 10 7 5.5307 3.6000 -0.2473 11 6 6.0371 4.7372 -0.7638 12 8 5.2903 5.6241 -1.1298 13 6 7.4988 4.9057 -0.8863 14 6 8.3571 3.8850 -0.4597 15 6 9.7071 4.0337 -0.5760 16 6 10.2387 5.2215 -1.1156 17 6 11.6357 5.3824 -1.2330 18 1 12.0651 6.3730 -1.2569 19 6 12.4664 4.2558 -1.3187 20 7 11.9613 3.0946 -1.6396 21 14 14.2954 4.4157 -0.9741 22 1 14.6137 5.8258 -0.6343 23 1 14.6629 3.5373 0.1654 24 1 15.0633 4.0110 -2.1789 25 6 9.3713 6.2481 -1.5381 26 6 8.0225 6.0878 -1.4237 27 6 3.7369 1.9412 -0.1258 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 0.6635 2.2779 1.3969 32 1 2.2354 1.9149 2.1492 33 1 1.5934 4.3788 0.4652 34 1 1.7452 4.3441 2.2386 35 1 3.8460 5.1289 1.1812 36 1 4.0941 3.5804 2.0228 37 1 6.1266 2.8924 0.0443 38 1 7.9486 2.9768 -0.0416 39 1 10.3681 3.2439 -0.2508 40 1 12.5358 2.3152 -1.6985 41 1 9.7743 7.1603 -1.9528 42 1 7.3566 6.8740 -1.7476 43 1 4.2296 1.4546 0.7160 44 1 4.0783 1.4895 -1.0571 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270335112.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:38 Heat of formation + Delta-G solvation = -48.356912 kcal Electronic energy + Delta-G solvation = -23723.856419 eV Core-core repulsion = 20344.448084 eV Total energy + Delta-G solvation = -3379.408335 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.65248 -38.11913 -36.91398 -33.88261 -33.81895 -31.03575 -30.63289 -29.52930 -29.41283 -28.62466 -25.84144 -23.08255 -22.80590 -21.55122 -20.91812 -20.16873 -19.48836 -17.53772 -17.08050 -16.58868 -15.62885 -15.44905 -15.10176 -14.70861 -14.53038 -14.15000 -14.01221 -13.84064 -13.71476 -13.63875 -13.20834 -12.94123 -12.79653 -12.62549 -12.14431 -12.11974 -11.92135 -11.75044 -11.38696 -11.36127 -11.27680 -10.97299 -10.94002 -10.77158 -10.69854 -10.55174 -10.03888 -9.93814 -9.56867 -9.35481 -8.95309 -8.59894 -7.94022 -7.72467 -7.54745 -7.04177 -4.60615 1.40248 2.22689 2.31099 2.90109 2.94919 3.00446 3.03497 3.69597 3.73699 3.86100 4.38993 4.55104 4.58939 4.75735 4.81314 4.86404 4.94903 5.00748 5.18012 5.21164 5.30743 5.36744 5.46962 5.57169 5.69353 5.78044 5.82452 5.87018 6.02814 6.04676 6.05614 6.26343 6.31538 6.34868 6.76610 6.82320 6.94874 7.06633 7.13279 7.43357 7.65203 7.79005 7.85896 8.06792 8.24329 8.39725 8.62817 8.75018 9.07888 9.87809 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.022459 B = 0.002444 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.440185 B =11454.655212 C =12304.940683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.264 6.264 3 C -0.044 4.044 4 H 0.089 0.911 5 C -0.114 4.114 6 C -0.113 4.113 7 C -0.131 4.131 8 C 0.157 3.843 9 H 0.085 0.915 10 N -0.738 5.738 11 C 0.574 3.426 12 O -0.575 6.575 13 C -0.285 4.285 14 C -0.062 4.062 15 C -0.179 4.179 16 C 0.128 3.872 17 C -0.442 4.442 18 H 0.085 0.915 19 C 0.074 3.926 20 N -0.771 5.771 21 Si 0.913 3.087 22 H -0.257 1.257 23 H -0.269 1.269 24 H -0.272 1.272 25 C -0.239 4.239 26 C -0.022 4.022 27 C -0.107 4.107 28 H 0.075 0.925 29 H 0.099 0.901 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.397 0.603 38 H 0.089 0.911 39 H 0.120 0.880 40 H 0.286 0.714 41 H 0.098 0.902 42 H 0.100 0.900 43 H 0.077 0.923 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.463 -6.269 5.499 17.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.036 6.036 3 C -0.174 4.174 4 H 0.108 0.892 5 C -0.153 4.153 6 C -0.153 4.153 7 C -0.170 4.170 8 C 0.050 3.950 9 H 0.103 0.897 10 N -0.390 5.390 11 C 0.369 3.631 12 O -0.457 6.457 13 C -0.289 4.289 14 C -0.081 4.081 15 C -0.198 4.198 16 C 0.125 3.875 17 C -0.470 4.470 18 H 0.103 0.897 19 C -0.147 4.147 20 N -0.394 5.394 21 Si 0.736 3.264 22 H -0.181 1.181 23 H -0.194 1.194 24 H -0.197 1.197 25 C -0.259 4.259 26 C -0.041 4.041 27 C -0.146 4.146 28 H 0.094 0.906 29 H 0.117 0.883 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.232 0.768 38 H 0.107 0.893 39 H 0.138 0.862 40 H 0.097 0.903 41 H 0.116 0.884 42 H 0.119 0.881 43 H 0.095 0.905 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -15.268 -6.832 5.153 17.503 hybrid contribution 0.232 0.478 0.190 0.564 sum -15.036 -6.354 5.343 17.176 Atomic orbital electron populations 1.23383 0.94457 1.06301 1.04895 1.86938 1.07087 1.11598 1.97932 1.23119 0.99813 0.92989 1.01434 0.89237 1.21895 1.00679 0.96261 0.96452 1.21508 0.96382 0.95144 1.02248 1.21974 0.95047 1.02173 0.97822 1.20705 0.82314 0.93739 0.98278 0.89734 1.45940 1.06154 1.20149 1.66725 1.18581 0.89015 0.80493 0.75036 1.90624 1.61443 1.41863 1.51801 1.18899 0.89896 0.99411 1.20716 1.20474 0.94195 0.95585 0.97887 1.20977 0.93448 1.00162 1.05189 1.17792 0.93080 0.90838 0.85818 1.19879 0.91502 0.94049 1.41522 0.89683 1.26105 1.02200 0.94554 0.91875 1.69746 1.38762 1.00901 1.30003 0.86176 0.80952 0.80176 0.79080 1.18061 1.19378 1.19667 1.20712 0.92661 1.01367 1.11120 1.20362 0.94727 0.94784 0.94256 1.21615 0.92580 0.96573 1.03871 0.90562 0.88252 0.90469 0.91980 0.90551 0.91706 0.91379 0.90906 0.91718 0.76773 0.89334 0.86205 0.90268 0.88409 0.88142 0.90465 0.90253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.83 10.45 101.05 1.06 0.22 16 2 S -0.26 -2.63 21.79 -107.50 -2.34 -4.98 16 3 C -0.04 -0.43 2.65 -26.73 -0.07 -0.50 16 4 H 0.09 0.86 8.14 -51.92 -0.42 0.44 16 5 C -0.11 -0.98 5.11 -26.73 -0.14 -1.11 16 6 C -0.11 -1.08 5.92 -26.74 -0.16 -1.23 16 7 C -0.13 -1.61 5.49 -26.73 -0.15 -1.76 16 8 C 0.16 2.12 2.46 -67.90 -0.17 1.95 16 9 H 0.08 1.30 7.57 -51.93 -0.39 0.90 16 10 N -0.74 -12.02 5.03 -54.79 -0.28 -12.30 16 11 C 0.57 11.97 7.73 -12.42 -0.10 11.87 16 12 O -0.58 -13.39 15.98 5.29 0.08 -13.30 16 13 C -0.28 -6.45 5.89 -104.73 -0.62 -7.07 16 14 C -0.06 -1.37 9.47 -39.61 -0.38 -1.74 16 15 C -0.18 -4.36 8.63 -39.27 -0.34 -4.69 16 16 C 0.13 3.25 5.58 -106.81 -0.60 2.66 16 17 C -0.44 -10.96 9.04 -37.74 -0.34 -11.31 16 18 H 0.09 2.02 7.91 -52.49 -0.42 1.61 16 19 C 0.07 1.72 5.14 -17.31 -0.09 1.63 16 20 N -0.77 -18.42 10.95 55.56 0.61 -17.81 16 21 Si 0.91 17.22 29.60 -169.99 -5.03 12.19 16 22 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 23 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 24 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 25 C -0.24 -5.78 9.73 -39.28 -0.38 -6.17 16 26 C -0.02 -0.52 9.52 -39.61 -0.38 -0.90 16 27 C -0.11 -1.19 4.68 -26.70 -0.13 -1.32 16 28 H 0.08 0.48 8.14 -51.92 -0.42 0.06 16 29 H 0.10 0.58 8.14 -51.92 -0.42 0.16 16 30 H 0.08 0.46 7.14 -51.92 -0.37 0.09 16 31 H 0.06 0.46 6.92 -51.93 -0.36 0.10 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.40 5.87 6.60 -40.82 -0.27 5.60 16 38 H 0.09 1.65 6.37 -52.48 -0.33 1.32 16 39 H 0.12 2.96 6.16 -52.48 -0.32 2.64 16 40 H 0.29 6.13 8.29 -40.82 -0.34 5.79 16 41 H 0.10 2.21 8.06 -52.49 -0.42 1.78 16 42 H 0.10 2.29 7.63 -52.49 -0.40 1.89 16 43 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 44 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 366.26 15.07 5.52 5.52 Total: -1.00 -27.87 366.26 -11.05 -38.92 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -6.65 Total: 11.22 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: -2.96 Total: -19.46 kcal Atomic # 7 Polarization: -30.44 SS G_CDS: 0.33 Total: -30.11 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: 0.08 Total: -13.30 kcal Atomic # 14 Polarization: 17.22 SS G_CDS: -5.03 Total: 12.19 kcal Atomic # 16 Polarization: -2.63 SS G_CDS: -2.34 Total: -4.98 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -27.87 -11.05 -38.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270335112.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.436 kcal (2) G-P(sol) polarization free energy of solvation -27.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds