Wall clock time and date at job start Tue Mar 31 2020 12:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81406 * 103.00179 * 2 1 4 4 H 1.09002 * 109.46376 * 305.00001 * 3 2 1 5 5 C 1.52994 * 109.46954 * 65.00088 * 3 2 1 6 6 C 1.53000 * 109.46997 * 180.02562 * 5 3 2 7 7 C 1.52996 * 109.47269 * 299.99790 * 6 5 3 8 8 C 1.53004 * 109.47129 * 59.99853 * 7 6 5 9 9 H 1.08998 * 109.47385 * 180.02562 * 8 7 6 10 10 N 1.46505 * 109.47038 * 60.00209 * 8 7 6 11 11 C 1.34769 * 120.00012 * 84.99999 * 10 8 7 12 12 O 1.21583 * 120.00297 * 0.02562 * 11 10 8 13 13 C 1.47639 * 119.99835 * 180.02562 * 11 10 8 14 14 C 1.40015 * 119.89909 * 359.72593 * 13 11 10 15 15 C 1.36320 * 120.10647 * 179.71931 * 14 13 11 16 16 C 1.40885 * 119.89388 * 0.53321 * 15 14 13 17 17 C 1.41107 * 120.10712 * 179.76203 * 16 15 14 18 18 H 1.07995 * 119.99909 * 150.13068 * 17 16 15 19 19 C 1.40224 * 119.99650 * 330.13805 * 17 16 15 20 20 N 1.30647 * 120.00022 * 161.74853 * 19 17 16 21 21 Si 1.86801 * 120.00158 * 341.74632 * 19 17 16 22 22 H 1.48495 * 109.47183 * 95.41279 * 21 19 17 23 23 H 1.48503 * 109.47034 * 215.41664 * 21 19 17 24 24 H 1.48502 * 109.47181 * 335.41152 * 21 19 17 25 25 C 1.40890 * 119.79273 * 359.74346 * 16 15 14 26 26 C 1.36316 * 119.89141 * 359.97438 * 25 16 15 27 27 C 1.53000 * 109.47165 * 300.00210 * 8 7 6 28 28 H 1.09004 * 109.47145 * 299.99859 * 1 2 3 29 29 H 1.08998 * 109.47022 * 59.99935 * 1 2 3 30 30 H 1.08996 * 109.46866 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47318 * 300.00182 * 5 3 2 32 32 H 1.08990 * 109.47789 * 60.00253 * 5 3 2 33 33 H 1.09005 * 109.47025 * 59.99905 * 6 5 3 34 34 H 1.08998 * 109.47202 * 179.97438 * 6 5 3 35 35 H 1.09001 * 109.47273 * 179.97438 * 7 6 5 36 36 H 1.08996 * 109.47262 * 300.00221 * 7 6 5 37 37 H 0.97008 * 119.99584 * 265.00272 * 10 8 7 38 38 H 1.07994 * 119.93946 * 0.02562 * 14 13 11 39 39 H 1.08002 * 120.05048 * 180.29358 * 15 14 13 40 40 H 0.97001 * 119.99887 * 179.97438 * 20 19 17 41 41 H 1.07999 * 120.05695 * 180.02562 * 25 16 15 42 42 H 1.08003 * 119.94957 * 179.97438 * 26 25 16 43 43 H 1.09003 * 109.47181 * 300.00278 * 27 8 7 44 44 H 1.08999 * 109.47256 * 179.97438 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 1 1.7294 2.2541 -0.8419 5 6 1.7429 2.4016 1.3073 6 6 2.0865 3.8925 1.3071 7 6 3.6013 4.0667 1.1811 8 6 4.0806 3.4326 -0.1263 9 1 5.1598 3.5563 -0.2159 10 7 3.4181 4.0862 -1.2577 11 6 3.9282 5.2225 -1.7725 12 8 4.9384 5.7050 -1.2982 13 6 3.2602 5.8815 -2.9123 14 6 2.1001 5.3210 -3.4606 15 6 1.4767 5.9290 -4.5094 16 6 2.0078 7.1172 -5.0489 17 6 1.3690 7.7476 -6.1378 18 1 1.4325 8.8193 -6.2543 19 6 0.6515 6.9824 -7.0683 20 7 -0.2207 7.5573 -7.8530 21 14 0.9427 5.1410 -7.1862 22 1 -0.0675 4.4265 -6.3651 23 1 0.8237 4.7106 -8.6025 24 1 2.3036 4.8219 -6.6847 25 6 3.1786 7.6743 -4.4976 26 6 3.7918 7.0622 -3.4452 27 6 3.7370 1.9417 -0.1260 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 0.6635 2.2778 1.3969 32 1 2.2354 1.9151 2.1491 33 1 1.5935 4.3788 0.4652 34 1 1.7447 4.3443 2.2382 35 1 3.8461 5.1289 1.1804 36 1 4.0942 3.5804 2.0228 37 1 2.6122 3.7011 -1.6363 38 1 1.6959 4.4083 -3.0486 39 1 0.5793 5.4985 -4.9285 40 1 -0.7167 7.0280 -8.4969 41 1 3.5892 8.5852 -4.9076 42 1 4.6896 7.4882 -3.0221 43 1 4.2298 1.4553 0.7158 44 1 4.0780 1.4900 -1.0576 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270335113.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:41 Heat of formation + Delta-G solvation = -43.326563 kcal Electronic energy + Delta-G solvation = -24475.725049 eV Core-core repulsion = 21096.534846 eV Total energy + Delta-G solvation = -3379.190203 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.00269 -38.26714 -37.06104 -33.88222 -33.49456 -31.11346 -31.03479 -30.14502 -29.61666 -28.82205 -25.86613 -23.02082 -22.82926 -22.03591 -21.39598 -20.25776 -19.02565 -17.65784 -17.48501 -16.59590 -15.72919 -15.52990 -15.43912 -14.88950 -14.48627 -14.15318 -14.01487 -13.90439 -13.73353 -13.54957 -13.41118 -12.99497 -12.89536 -12.69520 -12.46786 -12.38748 -12.11374 -12.03807 -11.90396 -11.70694 -11.03258 -10.96832 -10.94496 -10.71563 -10.42910 -10.35466 -10.30767 -9.95472 -9.77503 -9.37519 -9.11808 -8.72088 -7.98988 -7.93799 -7.76973 -7.25037 -4.75748 1.42002 1.97846 2.31020 2.63917 2.91278 3.05609 3.14783 3.63026 3.65260 3.78210 4.36191 4.38783 4.45622 4.74125 4.85373 4.88036 4.93408 4.98992 5.11005 5.19636 5.27345 5.33549 5.43515 5.46683 5.60519 5.73171 5.73709 5.76001 5.78806 5.97132 5.98949 6.10304 6.18768 6.20484 6.40539 6.58880 6.70013 6.85574 6.93997 7.20793 7.34140 7.50107 7.65019 7.90788 8.06021 8.08349 8.41948 8.51649 8.91865 9.74841 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.013687 B = 0.003722 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.295511 B = 7521.637063 C = 8944.667765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.268 6.268 3 C -0.051 4.051 4 H 0.086 0.914 5 C -0.112 4.112 6 C -0.116 4.116 7 C -0.131 4.131 8 C 0.155 3.845 9 H 0.091 0.909 10 N -0.736 5.736 11 C 0.574 3.426 12 O -0.570 6.570 13 C -0.284 4.284 14 C -0.036 4.036 15 C -0.248 4.248 16 C 0.107 3.893 17 C -0.425 4.425 18 H 0.097 0.903 19 C 0.082 3.918 20 N -0.786 5.786 21 Si 0.915 3.085 22 H -0.267 1.267 23 H -0.287 1.287 24 H -0.240 1.240 25 C -0.221 4.221 26 C -0.017 4.017 27 C -0.106 4.106 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.393 0.607 38 H 0.091 0.909 39 H 0.103 0.897 40 H 0.291 0.709 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.085 0.915 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.076 -12.852 13.429 18.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.039 6.039 3 C -0.179 4.179 4 H 0.104 0.896 5 C -0.151 4.151 6 C -0.156 4.156 7 C -0.169 4.169 8 C 0.048 3.952 9 H 0.109 0.891 10 N -0.389 5.389 11 C 0.368 3.632 12 O -0.451 6.451 13 C -0.289 4.289 14 C -0.055 4.055 15 C -0.267 4.267 16 C 0.103 3.897 17 C -0.452 4.452 18 H 0.114 0.886 19 C -0.140 4.140 20 N -0.408 5.408 21 Si 0.741 3.259 22 H -0.193 1.193 23 H -0.214 1.214 24 H -0.163 1.163 25 C -0.241 4.241 26 C -0.036 4.036 27 C -0.145 4.145 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.118 0.882 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.229 0.771 38 H 0.109 0.891 39 H 0.121 0.879 40 H 0.102 0.898 41 H 0.124 0.876 42 H 0.125 0.875 43 H 0.103 0.897 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.095 -13.392 13.518 19.060 hybrid contribution -1.526 0.047 -0.463 1.595 sum -0.431 -13.345 13.055 18.674 Atomic orbital electron populations 1.23392 0.94183 1.06340 1.05096 1.86824 1.07466 1.11633 1.97943 1.23208 1.00308 0.93007 1.01398 0.89569 1.21866 1.00770 0.96275 0.96184 1.21523 0.96660 0.95037 1.02340 1.21939 0.95691 1.02171 0.97136 1.20772 0.98405 0.89822 0.86195 0.89062 1.46040 1.30818 1.27318 1.34759 1.18483 0.83222 0.79159 0.82331 1.90645 1.26126 1.65105 1.63231 1.18925 1.02825 1.02678 1.04454 1.20382 0.93656 0.96369 0.95112 1.20695 1.02773 1.01504 1.01734 1.17848 0.89663 0.90490 0.91651 1.19767 1.22846 0.97244 1.05321 0.88551 1.26362 0.91260 1.02295 0.94094 1.69608 1.15049 1.40220 1.15924 0.86236 0.82116 0.80711 0.76853 1.19339 1.21430 1.16336 1.20745 0.98108 1.03439 1.01771 1.20453 0.97068 0.92733 0.93352 1.21663 0.92570 0.96297 1.03985 0.90431 0.90371 0.88243 0.91997 0.90656 0.91451 0.91638 0.90872 0.91302 0.77068 0.89125 0.87945 0.89816 0.87641 0.87538 0.89676 0.90268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.93 10.45 101.05 1.06 0.13 16 2 S -0.27 -2.67 21.79 -107.50 -2.34 -5.01 16 3 C -0.05 -0.49 2.48 -26.73 -0.07 -0.55 16 4 H 0.09 0.88 6.50 -51.92 -0.34 0.54 16 5 C -0.11 -0.98 5.11 -26.73 -0.14 -1.12 16 6 C -0.12 -1.17 5.77 -26.73 -0.15 -1.32 16 7 C -0.13 -1.47 5.60 -26.73 -0.15 -1.62 16 8 C 0.15 1.91 2.78 -67.93 -0.19 1.72 16 9 H 0.09 1.26 7.58 -51.93 -0.39 0.87 16 10 N -0.74 -10.86 4.18 -54.81 -0.23 -11.09 16 11 C 0.57 11.03 7.73 -12.43 -0.10 10.94 16 12 O -0.57 -12.39 15.99 5.29 0.08 -12.31 16 13 C -0.28 -5.95 5.89 -104.73 -0.62 -6.57 16 14 C -0.04 -0.73 9.47 -39.61 -0.38 -1.10 16 15 C -0.25 -5.56 7.11 -39.27 -0.28 -5.84 16 16 C 0.11 2.57 5.11 -106.80 -0.55 2.03 16 17 C -0.43 -10.74 9.56 -37.75 -0.36 -11.11 16 18 H 0.10 2.53 8.06 -52.49 -0.42 2.11 16 19 C 0.08 2.00 5.40 -17.31 -0.09 1.91 16 20 N -0.79 -19.40 13.92 55.56 0.77 -18.62 16 21 Si 0.92 19.35 24.52 -169.99 -4.17 15.18 16 22 H -0.27 -5.42 6.71 56.52 0.38 -5.04 16 23 H -0.29 -5.85 7.11 56.52 0.40 -5.45 16 24 H -0.24 -5.28 6.87 56.52 0.39 -4.89 16 25 C -0.22 -5.02 9.73 -39.27 -0.38 -5.41 16 26 C -0.02 -0.37 9.52 -39.61 -0.38 -0.75 16 27 C -0.11 -1.07 4.90 -26.73 -0.13 -1.20 16 28 H 0.08 0.53 7.14 -51.92 -0.37 0.15 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.51 6.92 -51.92 -0.36 0.15 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.78 7.60 -51.93 -0.39 0.38 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.39 5.29 4.87 -40.82 -0.20 5.09 16 38 H 0.09 1.51 6.37 -52.49 -0.33 1.18 16 39 H 0.10 2.25 4.73 -52.49 -0.25 2.01 16 40 H 0.29 6.44 8.29 -40.82 -0.34 6.10 16 41 H 0.11 2.25 8.06 -52.49 -0.42 1.82 16 42 H 0.11 2.24 7.63 -52.48 -0.40 1.84 16 43 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 356.58 15.07 5.37 5.37 Total: -1.00 -27.26 356.58 -9.84 -37.10 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -6.44 Total: 9.25 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: -2.90 Total: -19.87 kcal Atomic # 7 Polarization: -30.26 SS G_CDS: 0.54 Total: -29.71 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: 0.08 Total: -12.31 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -4.17 Total: 15.18 kcal Atomic # 16 Polarization: -2.67 SS G_CDS: -2.34 Total: -5.01 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -27.26 -9.84 -37.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270335113.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.228 kcal (2) G-P(sol) polarization free energy of solvation -27.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds