Wall clock time and date at job start Tue Mar 31 2020 12:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81406 * 103.00179 * 2 1 4 4 H 1.09002 * 109.46376 * 305.00001 * 3 2 1 5 5 C 1.52994 * 109.46954 * 65.00088 * 3 2 1 6 6 C 1.53000 * 109.46997 * 180.02562 * 5 3 2 7 7 C 1.52996 * 109.47269 * 299.99790 * 6 5 3 8 8 C 1.53004 * 109.47129 * 59.99853 * 7 6 5 9 9 H 1.08998 * 109.47385 * 180.02562 * 8 7 6 10 10 N 1.46505 * 109.47038 * 60.00209 * 8 7 6 11 11 C 1.34769 * 120.00012 * 84.99999 * 10 8 7 12 12 O 1.21583 * 120.00297 * 0.02562 * 11 10 8 13 13 C 1.47639 * 119.99835 * 180.02562 * 11 10 8 14 14 C 1.40015 * 119.89909 * 359.72593 * 13 11 10 15 15 C 1.36320 * 120.10647 * 179.71931 * 14 13 11 16 16 C 1.40885 * 119.89388 * 0.53321 * 15 14 13 17 17 C 1.41107 * 120.10712 * 179.76203 * 16 15 14 18 18 H 1.07995 * 119.99909 * 150.13068 * 17 16 15 19 19 C 1.40224 * 119.99650 * 330.13805 * 17 16 15 20 20 N 1.30647 * 120.00022 * 161.74853 * 19 17 16 21 21 Si 1.86801 * 120.00158 * 341.74632 * 19 17 16 22 22 H 1.48495 * 109.47183 * 95.41279 * 21 19 17 23 23 H 1.48503 * 109.47034 * 215.41664 * 21 19 17 24 24 H 1.48502 * 109.47181 * 335.41152 * 21 19 17 25 25 C 1.40890 * 119.79273 * 359.74346 * 16 15 14 26 26 C 1.36316 * 119.89141 * 359.97438 * 25 16 15 27 27 C 1.53000 * 109.47165 * 300.00210 * 8 7 6 28 28 H 1.09004 * 109.47145 * 299.99859 * 1 2 3 29 29 H 1.08998 * 109.47022 * 59.99935 * 1 2 3 30 30 H 1.08996 * 109.46866 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47318 * 300.00182 * 5 3 2 32 32 H 1.08990 * 109.47789 * 60.00253 * 5 3 2 33 33 H 1.09005 * 109.47025 * 59.99905 * 6 5 3 34 34 H 1.08998 * 109.47202 * 179.97438 * 6 5 3 35 35 H 1.09001 * 109.47273 * 179.97438 * 7 6 5 36 36 H 1.08996 * 109.47262 * 300.00221 * 7 6 5 37 37 H 0.97008 * 119.99584 * 265.00272 * 10 8 7 38 38 H 1.07994 * 119.93946 * 0.02562 * 14 13 11 39 39 H 1.08002 * 120.05048 * 180.29358 * 15 14 13 40 40 H 0.97001 * 119.99887 * 179.97438 * 20 19 17 41 41 H 1.07999 * 120.05695 * 180.02562 * 25 16 15 42 42 H 1.08003 * 119.94957 * 179.97438 * 26 25 16 43 43 H 1.09003 * 109.47181 * 300.00278 * 27 8 7 44 44 H 1.08999 * 109.47256 * 179.97438 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 1 1.7294 2.2541 -0.8419 5 6 1.7429 2.4016 1.3073 6 6 2.0865 3.8925 1.3071 7 6 3.6013 4.0667 1.1811 8 6 4.0806 3.4326 -0.1263 9 1 5.1598 3.5563 -0.2159 10 7 3.4181 4.0862 -1.2577 11 6 3.9282 5.2225 -1.7725 12 8 4.9384 5.7050 -1.2982 13 6 3.2602 5.8815 -2.9123 14 6 2.1001 5.3210 -3.4606 15 6 1.4767 5.9290 -4.5094 16 6 2.0078 7.1172 -5.0489 17 6 1.3690 7.7476 -6.1378 18 1 1.4325 8.8193 -6.2543 19 6 0.6515 6.9824 -7.0683 20 7 -0.2207 7.5573 -7.8530 21 14 0.9427 5.1410 -7.1862 22 1 -0.0675 4.4265 -6.3651 23 1 0.8237 4.7106 -8.6025 24 1 2.3036 4.8219 -6.6847 25 6 3.1786 7.6743 -4.4976 26 6 3.7918 7.0622 -3.4452 27 6 3.7370 1.9417 -0.1260 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 0.6635 2.2778 1.3969 32 1 2.2354 1.9151 2.1491 33 1 1.5935 4.3788 0.4652 34 1 1.7447 4.3443 2.2382 35 1 3.8461 5.1289 1.1804 36 1 4.0942 3.5804 2.0228 37 1 2.6122 3.7011 -1.6363 38 1 1.6959 4.4083 -3.0486 39 1 0.5793 5.4985 -4.9285 40 1 -0.7167 7.0280 -8.4969 41 1 3.5892 8.5852 -4.9076 42 1 4.6896 7.4882 -3.0221 43 1 4.2298 1.4553 0.7158 44 1 4.0780 1.4900 -1.0576 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270335113.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:40 Heat of formation + Delta-G solvation = -56.825478 kcal Electronic energy + Delta-G solvation = -24476.310406 eV Core-core repulsion = 21096.534846 eV Total energy + Delta-G solvation = -3379.775560 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.29474 -39.68997 -38.57417 -35.67451 -34.74497 -32.66635 -31.89848 -31.79739 -30.77355 -29.52554 -27.57646 -24.20382 -23.72592 -23.31778 -23.09593 -21.71808 -20.12789 -19.48057 -18.89681 -17.60002 -17.21425 -16.81325 -16.36443 -15.99439 -15.87460 -15.61754 -15.45521 -15.11855 -14.83422 -14.61231 -14.38029 -14.31954 -14.23054 -14.00412 -13.83270 -13.64475 -13.24754 -13.14047 -12.83495 -12.76897 -12.64409 -12.55125 -12.21062 -12.00210 -11.79227 -11.56620 -11.53382 -11.20897 -11.09374 -10.73718 -10.71133 -10.02583 -9.72455 -9.53877 -9.04905 -8.67073 -6.64128 0.26119 0.72395 0.87516 1.23255 1.37447 1.47758 1.64322 1.98054 2.09433 2.34634 2.69004 3.46826 3.58088 3.63180 3.84791 4.07711 4.12544 4.13600 4.15957 4.25849 4.31813 4.34919 4.36250 4.39267 4.60058 4.61142 4.65998 4.79511 4.83672 4.89358 4.95094 4.99673 5.02617 5.08627 5.16021 5.22619 5.28053 5.37106 5.45572 5.57565 5.64606 5.76609 5.81546 6.10396 6.24593 6.58278 6.65692 6.69652 7.41754 8.01233 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.013687 B = 0.003722 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.295511 B = 7521.637063 C = 8944.667765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 S -0.297 6.297 3 C -0.046 4.046 4 H 0.082 0.918 5 C -0.104 4.104 6 C -0.112 4.112 7 C -0.127 4.127 8 C 0.153 3.847 9 H 0.076 0.924 10 N -0.717 5.717 11 C 0.575 3.425 12 O -0.596 6.596 13 C -0.281 4.281 14 C -0.028 4.028 15 C -0.257 4.257 16 C 0.095 3.905 17 C -0.464 4.464 18 H 0.065 0.935 19 C 0.052 3.948 20 N -0.823 5.823 21 Si 0.964 3.036 22 H -0.246 1.246 23 H -0.275 1.275 24 H -0.253 1.253 25 C -0.233 4.233 26 C -0.025 4.025 27 C -0.097 4.097 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.109 0.891 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.052 0.948 34 H 0.076 0.924 35 H 0.045 0.955 36 H 0.091 0.909 37 H 0.403 0.597 38 H 0.133 0.867 39 H 0.110 0.890 40 H 0.301 0.699 41 H 0.107 0.893 42 H 0.111 0.889 43 H 0.100 0.900 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.684 -16.042 15.440 22.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.284 4.284 2 S -0.069 6.069 3 C -0.175 4.175 4 H 0.100 0.900 5 C -0.143 4.143 6 C -0.152 4.152 7 C -0.166 4.166 8 C 0.047 3.953 9 H 0.094 0.906 10 N -0.370 5.370 11 C 0.368 3.632 12 O -0.480 6.480 13 C -0.285 4.285 14 C -0.047 4.047 15 C -0.276 4.276 16 C 0.092 3.908 17 C -0.492 4.492 18 H 0.083 0.917 19 C -0.167 4.167 20 N -0.447 5.447 21 Si 0.786 3.214 22 H -0.171 1.171 23 H -0.201 1.201 24 H -0.177 1.177 25 C -0.252 4.252 26 C -0.044 4.044 27 C -0.136 4.136 28 H 0.107 0.893 29 H 0.098 0.902 30 H 0.128 0.872 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.071 0.929 34 H 0.095 0.905 35 H 0.064 0.936 36 H 0.109 0.891 37 H 0.240 0.760 38 H 0.151 0.849 39 H 0.128 0.872 40 H 0.112 0.888 41 H 0.125 0.875 42 H 0.129 0.871 43 H 0.118 0.882 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.461 -16.602 15.544 22.748 hybrid contribution -1.223 1.013 -0.884 1.818 sum -0.762 -15.589 14.659 21.413 Atomic orbital electron populations 1.23456 0.91866 1.07291 1.05737 1.86956 1.10085 1.11804 1.98018 1.23148 0.99643 0.92901 1.01758 0.89985 1.21819 1.01558 0.94985 0.95931 1.21486 0.95304 0.96057 1.02323 1.21896 0.96995 1.00513 0.97156 1.20934 0.97392 0.91293 0.85670 0.90593 1.45908 1.30622 1.25690 1.34732 1.18262 0.82851 0.80158 0.81979 1.90641 1.27299 1.66146 1.63911 1.19306 1.02728 1.02050 1.04398 1.20709 0.92753 0.97346 0.93900 1.20848 1.03245 1.01128 1.02385 1.18001 0.89910 0.91461 0.91434 1.19716 1.25800 0.96159 1.07527 0.91707 1.26977 0.90662 1.05680 0.93338 1.69617 1.16177 1.41843 1.17075 0.85507 0.81564 0.76541 0.77788 1.17088 1.20101 1.17711 1.20877 0.98198 1.03843 1.02282 1.20611 0.97289 0.93307 0.93200 1.21576 0.93335 0.94191 1.04481 0.89319 0.90176 0.87210 0.90898 0.89796 0.92929 0.90527 0.93584 0.89101 0.75961 0.84942 0.87226 0.88783 0.87480 0.87051 0.88183 0.90715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.36 10.45 113.37 1.19 -0.18 16 2 S -0.30 -5.01 21.79 -56.49 -1.23 -6.24 16 3 C -0.05 -0.73 2.48 30.59 0.08 -0.65 16 4 H 0.08 1.38 6.50 -2.39 -0.02 1.36 16 5 C -0.10 -1.44 5.11 30.59 0.16 -1.28 16 6 C -0.11 -1.91 5.77 30.59 0.18 -1.74 16 7 C -0.13 -2.56 5.60 30.59 0.17 -2.39 16 8 C 0.15 3.42 2.78 44.99 0.13 3.55 16 9 H 0.08 1.99 7.58 -2.39 -0.02 1.97 16 10 N -0.72 -19.40 4.18 -445.59 -1.86 -21.26 16 11 C 0.57 21.14 7.73 86.73 0.67 21.81 16 12 O -0.60 -25.42 15.99 -3.98 -0.06 -25.48 16 13 C -0.28 -11.30 5.89 -19.93 -0.12 -11.42 16 14 C -0.03 -1.07 9.47 22.25 0.21 -0.86 16 15 C -0.26 -11.19 7.11 22.47 0.16 -11.03 16 16 C 0.10 4.64 5.11 -21.28 -0.11 4.53 16 17 C -0.46 -24.51 9.56 23.46 0.22 -24.28 16 18 H 0.06 3.68 8.06 -2.91 -0.02 3.66 16 19 C 0.05 2.59 5.40 85.35 0.46 3.05 16 20 N -0.82 -41.66 13.92 21.87 0.30 -41.36 16 21 Si 0.96 39.00 24.52 68.60 1.68 40.68 16 22 H -0.25 -9.06 6.71 99.48 0.67 -8.39 16 23 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 24 H -0.25 -10.70 6.87 99.48 0.68 -10.01 16 25 C -0.23 -10.78 9.73 22.47 0.22 -10.56 16 26 C -0.02 -1.08 9.52 22.25 0.21 -0.87 16 27 C -0.10 -1.67 4.90 30.60 0.15 -1.52 16 28 H 0.09 0.86 7.14 -2.39 -0.02 0.84 16 29 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.07 0.89 6.92 -2.38 -0.02 0.88 16 32 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.05 1.06 7.60 -2.38 -0.02 1.04 16 34 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.40 9.45 4.87 -92.70 -0.45 9.00 16 38 H 0.13 3.84 6.37 -2.91 -0.02 3.82 16 39 H 0.11 4.59 4.73 -2.91 -0.01 4.58 16 40 H 0.30 13.49 8.29 -92.71 -0.77 12.72 16 41 H 0.11 4.78 8.06 -2.91 -0.02 4.75 16 42 H 0.11 4.69 7.63 -2.91 -0.02 4.67 16 43 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -60.07 356.58 3.29 -56.78 By element: Atomic # 1 Polarization: 30.25 SS G_CDS: 0.49 Total: 30.74 kcal Atomic # 6 Polarization: -37.82 SS G_CDS: 3.97 Total: -33.85 kcal Atomic # 7 Polarization: -61.07 SS G_CDS: -1.56 Total: -62.63 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: -0.06 Total: -25.48 kcal Atomic # 14 Polarization: 39.00 SS G_CDS: 1.68 Total: 40.68 kcal Atomic # 16 Polarization: -5.01 SS G_CDS: -1.23 Total: -6.24 kcal Total: -60.07 3.29 -56.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270335113.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.048 kcal (2) G-P(sol) polarization free energy of solvation -60.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds